description	A comparative genetic map viewer
homepage URL	http://solgenomics.net
repository URL	https://github.com/solgenomics/Cview.git
owner	jonathan@leto.net
last change	Thu, 1 Feb 2024 16:15:04 +0000 (1 11:15 -0500)
last refresh	Thu, 21 Nov 2024 08:19:40 +0000 (21 09:19 +0100)
mirror URL	git://repo.or.cz/cview.git
	https://repo.or.cz/cview.git
	ssh://git@repo.or.cz/cview.git
bundle info	cview.git downloadable bundles
content tags	add:

README.md

Cview

CView is a web-based comparative viewer for mapping data, including genetic, physical and cytological maps, that is part of the SGN website but that can also be installed and adapted for other websites. In addition to viewing and comparing different maps stored in the SGN database, the viewer allows users to upload their own maps and compare them to other maps in the system. The viewer is implemented in object-oriented Perl, with a simple extensible interface to write data adapters for other relational database schemas and flat file formats

Motivation

With the rapid accumulation of genetic data for a multitude of different species, the availability of intuitive comparative genomic tools becomes an important requirement for the research community.

Links

http://www.ncbi.nlm.nih.gov/pubmed/18202028

2024-02-01	Lukas Mueller	Merge pull request #5 from solgenomics/topic/fix_il_mapsmaster	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2024-01-29	nmenda	fix genotype_region.phenome_genotype_id column nametopic/fix_il_maps5/head	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2020-09-28	Naama Menda	Merge pull request #4 from solgenomics/topic/fix_genoty...	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2020-09-15	Lukas Mueller	change genotype table name to phenome_genotype along... 4/head	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2020-07-02	Lukas Mueller	Merge pull request #3 from solgenomics/ClayBirkett...	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2020-05-13	Production...	enable sequence-based maps in the Cassava backend.	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2020-03-24	The Triticeae...	Update ChrMarkerImage.pm3/head	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2018-05-28	nickmorales	typo in genetic	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2015-12-17	Jeremy D. Edwards	add ricebase to allowed backend types	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-12-18	Lukas Mueller	prevent undefined variable errors.	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-07-09	Lukas Mueller	add option to link by marker name instead of marker...	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-05-10	Lukas Mueller	fix seq map creation, need to return map obj.Cview-29.0Cview-30.0	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-05-10	Lukas Mueller	add anoter db backend.	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-05-10	Lukas Mueller	add a cacaobase specific map factory object.	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2013-05-10	Lukas Mueller	use accessor to set the link instead of overriding...	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
2012-11-17	Lukas Mueller	more synonym shoehorning.	commit \| commitdiff \| tree \| snapshot (tar.gz zip)
...

11 years ago	Cview-30.0	make_release_tag: tagging master...	tag	\| commit \| log
11 years ago	Cview-29.0	make_release_tag: tagging master...	tag	\| commit \| log
12 years ago	Cview-28.0	make_release_tag: tagging master...	tag	\| commit \| log
12 years ago	Cview-27.0	make_release_tag.pl: tagging master...	tag	\| commit \| log
12 years ago	Cview-26.0	make_release_tag.pl: tagging master...	tag	\| commit \| log
12 years ago	Cview-25.0	make_release_tag: tagging master...	tag	\| commit \| log
12 years ago	Cview-24.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-23.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-22.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-21.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-20.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-19.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-18.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-17.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-16.0	make_release_tag: tagging master...	tag	\| commit \| log
13 years ago	Cview-15.0	make_release_tag.pl: tagging master...	tag	\| commit \| log
...

9 months ago	master	log \| tree
9 months ago	topic/fix_il_maps	log \| tree
6 years ago	topic/genotype_maps	log \| tree
9 years ago	topic/sgntest_bootstrap	log \| tree
12 years ago	topic/ambikon	log \| tree
13 years ago	topic/agp	log \| tree
14 years ago	topic/map_overview	log \| tree

A comparative genetic map viewer

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