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Merge pull request #5 from solgenomics/topic/fix_il_maps
2024-02-01
Lukas
M
ueller
M
e
rge pull
r
eque
s
t
#5 from solgeno
m
ics/topi
c
/
f
ix_
i
l_maps
commit
|
commitdiff
|
tree
2020-09-15
L
ukas M
u
eller
change genotype table name to phenome_genoty
p
e a
l
ong
.
.
.
commit
|
commitdiff
|
tree
2020-07-02
Lukas Mueller
Merge
pull request #3 from so
l
genom
i
cs/Clay
B
irkett
.
.
.
commit
|
commitdiff
|
tree
2013-12-18
Lukas Mueller
prevent
u
nd
e
fi
n
ed
variable errors
.
commit
|
commitdiff
|
tree
2013-07-09
L
uka
s
Muelle
r
a
d
d option to link by marker
n
a
me instead of marker
.
.
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas Mueller
f
i
x
se
q
map creat
i
on, need to return map obj
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas
Mueller
add
anoter db backe
n
d
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas Mueller
add a cac
a
obase specific
m
a
p factory object
.
commit
|
commitdiff
|
tree
2013-05-10
Luka
s
Mueller
use
a
ccessor to set th
e
l
i
nk instea
d
of overri
d
ing
.
.
.
commit
|
commitdiff
|
tree
2012-11-17
Luk
a
s Muel
l
er
m
ore
syn
o
nym shoehorning
.
commit
|
commitdiff
|
tree
2012-11-17
Lukas Mueller
twea
k
ove
r
view
to a
l
so displa
y
sy
n
onyms
o
f markers
.
commit
|
commitdiff
|
tree
2012-10-02
Lukas Mu
e
lle
r
f
ix typo th
a
t cau
s
ed crash
.
commit
|
commitdiff
|
tree
2012-09-29
Lukas M
u
eller
code cleanup
.
commit
|
commitdiff
|
tree
2012-09-29
Lu
k
a
s
M
u
e
l
l
e
r
fix par
a
met
e
rs for Map
F
a
c
tory obj
e
ct
.
commit
|
commitdiff
|
tree
2012-09-27
Lukas Muell
e
r
fi
x
map c
o
mparison tool crash
.
commit
|
commitdiff
|
tree
2012-06-15
Lukas Muell
e
r
remove output
t
o STDERR
.
commit
|
commitdiff
|
tree
2012-06-11
Luk
a
s Muel
l
e
r
add m
a
p fa
c
tory obj
e
ct for cassavabase
.
commit
|
commitdiff
|
tree
2012-06-11
Lukas Mueller
don't fail
w
hen AGP
m
aps c
a
n
n
o
t
be cr
e
at
e
d
.
commit
|
commitdiff
|
tree
2012-06-11
Lukas Mueller
f
ix selec
t
ion o
f
the db back
e
nd
.
commit
|
commitdiff
|
tree
2012-06-11
Lukas M
u
eller
ad
d
ac
c
ess
o
r for the default map
.
commit
|
commitdiff
|
tree
2010-05-14
L
u
kas Mu
e
lle
r
fixed the offset
label
position tex
t
f
o
r range markers
.
commit
|
commitdiff
|
tree
2010-05-14
Lukas Mue
l
ler
fixed file paths
.
needs more wor
k
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Lukas Mueller
cha
n
ged t
h
e pa
t
hs to the fil
e
s
used
b
y t
h
e
scaff
o
ld
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas M
u
e
lle
r
a
r
uler for t
h
e scaffold-based maps
.
commit
|
commitdiff
|
tree
2010-05-12
Luka
s
Mueller
removed a chro
m
o
s
om
e
caching
s
cheme th
a
t
caus
e
d prob
l
ems
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
L
ukas Mue
l
l
e
r
s
e
tting the
ma
p
units i
n
th
e
c
o
n
st
r
uctor
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
added mi
s
sing a
r
gument
t
o
g
et
_
chromos
o
me() call
commit
|
commitdiff
|
tree
2010-05-12
Lukas M
u
eller
c
h
an
g
ed h
o
w the ge
t
_mar
k
e
rs functi
o
n works in regards
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lu
k
as Mueller
s
t
ylistic chan
g
es
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Muell
e
r
small
cha
n
ges
i
n
how un
i
ts
are
d
isplayed
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
made a small
a
djustm
e
nt how un
i
ts a
r
e d
i
spla
y
ed
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
added support for scaffold maps
commit
|
commitdiff
|
tree
2010-05-12
Luka
s
Mueller
ad
d
ed
z
ooming cap
a
bility t
o
the
scaffold ma
p
.
commit
|
commitdiff
|
tree
2010-04-30
Lukas Mueller
A chromosome class
fo
r
scaffold-b
a
s
e
d chromosomes
.
commit
|
commitdiff
|
tree
2010-04-30
Lukas
M
ue
l
ler
f
i
xed a bug in the chr
o
m
osome
length c
a
l
c
ulation
.
commit
|
commitdiff
|
tree
2010-04-30
L
u
k
a
s Muelle
r
added a functio
n
t
h
at will
d
etermine i
f
a ruler w
i
ll
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
L
ukas Mueller
a m
a
p that displ
a
ys a scaffold-based
map fr
o
m a
n
a
d
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
Lukas Mueller
ad
d
ed support for a sc
a
ffold m
a
p (this sho
u
ld be
m
odified
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas
M
ueller
fi
x
ed the l
i
nk
f
or the
I
TAG map
.
Now goes t
o
the correct
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas Muell
e
r
implemented
t
he form
a
t
t
i
ng of the
u
rl using a
co
d
e
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas Mueller
committing some ch
a
n
g
e
s
for testing
on p
g
83-devel
commit
|
commitdiff
|
tree
2010-04-13
Luk
a
s Mueller
adding
c
ode fo
r
links to
g
browse2
commit
|
commitdiff
|
tree
2010-04-12
Luka
s
Mueller
fixed a
t
ypo
commit
|
commitdiff
|
tree
2010-04-12
Lukas M
u
eller
removi
n
g a prema
t
urely c
o
mm
i
tted section
commit
|
commitdiff
|
tree
2010-04-12
Lukas Mueller
attempt to f
i
x
th
e
maps
.
.
.
SGN::Context not yet fac
t
o
r
e
d out
commit
|
commitdiff
|
tree
2010-04-07
Luka
s
Muell
e
r
fixed a bug which caused the links to the
chromosome
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
Lukas
Mueller
futzed around with the dependenci
e
s (s
o
mewhat bas
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
Luka
s
Mu
e
ller
a build script fo
r
the cvi
e
w compo
n
e
n
t
.
.
.
b
a
sed on
.
.
.
commit
|
commitdiff
|
tree
2010-03-03
Lukas Mueller
moving t
h
e Cview test directories
commit
|
commitdiff
|
tree
2010-03-03
Lukas Mueller
Removing print STDER
R
statemen
t
s
.
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mu
e
ller
removing mi
s
-p
l
ac
e
d direct
o
ry
commit
|
commitdiff
|
tree
2010-03-02
L
u
kas Mueller
movin
g
more
s
tuff
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mue
l
ler
movi
n
g even
more stuff
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mu
e
ller
mo
v
ing mo
r
e
s
tuff
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mue
l
le
r
mo
v
in
g
stuff aroun
d
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
oop
s
, this
d
i
recto
r
y w
a
s
misse
d
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
L
u
kas Mueller
Mov
i
ng Cview to
i
ts ow
n
componen
t
.
commit
|
commitdiff
|
tree