| blob | aaa1e8993e68e2d94ba59f3c01441970752fa313 |
1 bin/interproxml_to_gff3.pl
2 bin/validate_cxgn_resource.pl
3 Build.PL
4 lib/auto/Bio/Graphics/Browser/CAlign/CAlign.bs
5 lib/auto/Bio/Graphics/Browser/CAlign/CAlign.so
6 lib/Bio/FeatureIO/fgenesh.pm
7 lib/Bio/FeatureIO/geneseqer.pm
8 lib/Bio/FeatureIO/gthxml.pm
9 lib/Bio/GMOD/Blast/Graph.pm
10 lib/Bio/GMOD/Blast/Graph/BaseObj.pm
11 lib/Bio/GMOD/Blast/Graph/Bucket.pm
12 lib/Bio/GMOD/Blast/Graph/BucketSet.pm
13 lib/Bio/GMOD/Blast/Graph/HitWrapper.pm
14 lib/Bio/GMOD/Blast/Graph/IntSpan.pm
15 lib/Bio/GMOD/Blast/Graph/List.pm
16 lib/Bio/GMOD/Blast/Graph/ListEnumerator.pm
17 lib/Bio/GMOD/Blast/Graph/ListSet.pm
18 lib/Bio/GMOD/Blast/Graph/ListSetEnumerator.pm
19 lib/Bio/GMOD/Blast/Graph/MapDefs.pm
20 lib/Bio/GMOD/Blast/Graph/MapSpace.pm
21 lib/Bio/GMOD/Blast/Graph/MapUtils.pm
22 lib/Bio/GMOD/Blast/Graph/MyDebug.pm
23 lib/Bio/GMOD/Blast/Graph/MyMath.pm
24 lib/Bio/GMOD/Blast/Graph/MyUtils.pm
25 lib/Bio/GMOD/Blast/Graph/ScientificNotation.pm
26 lib/Bio/GMOD/Blast/Graph/WrapList.pm
27 lib/Bio/GMOD/Blast/Graph/WrapPartitionsFixed.pm
28 lib/Bio/GMOD/Blast/Util.pm
29 lib/Bio/Graphics/Gel.pm
30 lib/Bio/Graphics/Ruler.pm
31 lib/Bio/Seq/CXGNGenomic.pm
32 lib/Bio/SeqIO/sgn_genomic.pm
33 lib/Bio/SeqIO/xform.pm
34 lib/Chado/AutoDBI.pm
35 lib/Chado/Builder.pm
36 lib/Chado/Config.pm
37 lib/Chado/LoadDBI.pm
38 lib/Chado/Schema.pm
39 lib/CXGN.pm
40 lib/CXGN/Accession.pm
41 lib/CXGN/Accession/Tools.pm
42 lib/CXGN/Alignment.pm
43 lib/CXGN/BioTools/AGP.pm
44 lib/CXGN/BioTools/CapsDesigner.pm
45 lib/CXGN/BioTools/CapsDesigner2.pm
46 lib/CXGN/BioTools/FastaParser.pm
47 lib/CXGN/BlastDB.pm
48 lib/CXGN/BlastDB/Config.pm
49 lib/CXGN/BlastDB/FileSet.pm
50 lib/CXGN/BlastWatch.pm
51 lib/CXGN/BlastWatch/Config.pm
52 lib/CXGN/CDBI/Auto/Annotation/Annotation.pm
53 lib/CXGN/CDBI/Auto/Annotation/Comment.pm
54 lib/CXGN/CDBI/Auto/Annotation/CompAnalysis.pm
55 lib/CXGN/CDBI/Auto/Annotation/Dblist.pm
56 lib/CXGN/CDBI/Auto/Annotation/Dbxref.pm
57 lib/CXGN/CDBI/Auto/Annotation/FeatureSet.pm
58 lib/CXGN/CDBI/Auto/Annotation/FeatureSpan.pm
59 lib/CXGN/CDBI/Auto/Annotation/Organism.pm
60 lib/CXGN/CDBI/Auto/Annotation/Output.pm
61 lib/CXGN/CDBI/Auto/Annotation/Person.pm
62 lib/CXGN/CDBI/Auto/Annotation/Program.pm
63 lib/CXGN/CDBI/Auto/Annotation/Property.pm
64 lib/CXGN/CDBI/Auto/Annotation/ResultSet.pm
65 lib/CXGN/CDBI/Auto/Annotation/ResultSpan.pm
66 lib/CXGN/CDBI/Auto/Annotation/Seq.pm
67 lib/CXGN/CDBI/Auto/Annotation/SeqError.pm
68 lib/CXGN/CDBI/Auto/Annotation/SeqRelationship.pm
69 lib/CXGN/CDBI/Auto/Annotation/Synonym.pm
70 lib/CXGN/CDBI/Auto/Genomic/BlastDb.pm
71 lib/CXGN/CDBI/Auto/Genomic/BlastDefline.pm
72 lib/CXGN/CDBI/Auto/Genomic/BlastHit.pm
73 lib/CXGN/CDBI/Auto/Genomic/BlastQuery.pm
74 lib/CXGN/CDBI/Auto/Genomic/Chromat.pm
75 lib/CXGN/CDBI/Auto/Genomic/Clone.pm
76 lib/CXGN/CDBI/Auto/Genomic/CloneType.pm
77 lib/CXGN/CDBI/Auto/Genomic/GenbankSubmission.pm
78 lib/CXGN/CDBI/Auto/Genomic/Gss.pm
79 lib/CXGN/CDBI/Auto/Genomic/GssSubmittedToGenbank.pm
80 lib/CXGN/CDBI/Auto/Genomic/Library.pm
81 lib/CXGN/CDBI/Auto/Genomic/LibraryAnnotationDb.pm
82 lib/CXGN/CDBI/Auto/Genomic/LibraryDetail.pm
83 lib/CXGN/CDBI/Auto/Genomic/LibraryShortnameAbbreviation.pm
84 lib/CXGN/CDBI/Auto/Genomic/QcReport.pm
85 lib/CXGN/CDBI/Auto/Genomic/QuerySourceType.pm
86 lib/CXGN/CDBI/Auto/Genomic/ReadClass.pm
87 lib/CXGN/CDBI/Auto/Genomic/SequencingPrimer.pm
88 lib/CXGN/CDBI/Auto/Metadata/Attribution.pm
89 lib/CXGN/CDBI/Auto/Metadata/AttributionTo.pm
90 lib/CXGN/CDBI/Auto/Metadata/Comments.pm
91 lib/CXGN/CDBI/Auto/Metadata/Roles.pm
92 lib/CXGN/CDBI/Auto/Phenome/Allele.pm
93 lib/CXGN/CDBI/Auto/Phenome/AlleleAlias.pm
94 lib/CXGN/CDBI/Auto/Phenome/AlleleDbxref.pm
95 lib/CXGN/CDBI/Auto/Phenome/AlleleHistory.pm
96 lib/CXGN/CDBI/Auto/Phenome/DbxrefType.pm
97 lib/CXGN/CDBI/Auto/Phenome/Genotype.pm
98 lib/CXGN/CDBI/Auto/Phenome/GenotypeExperiment.pm
99 lib/CXGN/CDBI/Auto/Phenome/GenotypeRegion.pm
100 lib/CXGN/CDBI/Auto/Phenome/Germplasm.pm
101 lib/CXGN/CDBI/Auto/Phenome/Image.pm
102 lib/CXGN/CDBI/Auto/Phenome/Individual.pm
103 lib/CXGN/CDBI/Auto/Phenome/IndividualAllele.pm
104 lib/CXGN/CDBI/Auto/Phenome/IndividualDbxref.pm
105 lib/CXGN/CDBI/Auto/Phenome/IndividualDbxrefEvidence.pm
106 lib/CXGN/CDBI/Auto/Phenome/IndividualDbxrefEvidenceHistory.pm
107 lib/CXGN/CDBI/Auto/Phenome/IndividualHistory.pm
108 lib/CXGN/CDBI/Auto/Phenome/IndividualLocus.pm
109 lib/CXGN/CDBI/Auto/Phenome/Locus.pm
110 lib/CXGN/CDBI/Auto/Phenome/Locus2locus.pm
111 lib/CXGN/CDBI/Auto/Phenome/LocusAlias.pm
112 lib/CXGN/CDBI/Auto/Phenome/LocusDbxref.pm
113 lib/CXGN/CDBI/Auto/Phenome/LocusDbxrefEvidence.pm
114 lib/CXGN/CDBI/Auto/Phenome/LocusDbxrefEvidenceHistory.pm
115 lib/CXGN/CDBI/Auto/Phenome/Locusgroup.pm
116 lib/CXGN/CDBI/Auto/Phenome/LocusgroupMember.pm
117 lib/CXGN/CDBI/Auto/Phenome/LocusHistory.pm
118 lib/CXGN/CDBI/Auto/Phenome/LocusMarker.pm
119 lib/CXGN/CDBI/Auto/Phenome/LocusOwner.pm
120 lib/CXGN/CDBI/Auto/Phenome/LocusRegistry.pm
121 lib/CXGN/CDBI/Auto/Phenome/LocusUnigene.pm
122 lib/CXGN/CDBI/Auto/Phenome/Phenotype.pm
123 lib/CXGN/CDBI/Auto/Phenome/PhenotypeTerm.pm
124 lib/CXGN/CDBI/Auto/Phenome/PolymorphicFragment.pm
125 lib/CXGN/CDBI/Auto/Phenome/Population.pm
126 lib/CXGN/CDBI/Auto/Phenome/PopulationDbxref.pm
127 lib/CXGN/CDBI/Auto/Phenome/Registry.pm
128 lib/CXGN/CDBI/Auto/Phenome/TomatoIlBin.pm
129 lib/CXGN/CDBI/Auto/Phenome/TomatoTerm.pm
130 lib/CXGN/CDBI/Auto/Phenome/TomatoTerm2term.pm
131 lib/CXGN/CDBI/Auto/Phenome/Variant.pm
132 lib/CXGN/CDBI/Auto/Physical/BacAssociations.pm
133 lib/CXGN/CDBI/Auto/Physical/BacConsensusSequences.pm
134 lib/CXGN/CDBI/Auto/Physical/BacContigs.pm
135 lib/CXGN/CDBI/Auto/Physical/BacEndSequences.pm
136 lib/CXGN/CDBI/Auto/Physical/BacMarkerMatches.pm
137 lib/CXGN/CDBI/Auto/Physical/Bacs.pm
138 lib/CXGN/CDBI/Auto/Physical/BaPlausibility.pm
139 lib/CXGN/CDBI/Auto/Physical/ComputationalAssociations.pm
140 lib/CXGN/CDBI/Auto/Physical/ContigSizes.pm
141 lib/CXGN/CDBI/Auto/Physical/DeprecatedProbes.pm
142 lib/CXGN/CDBI/Auto/Physical/FpcData.pm
143 lib/CXGN/CDBI/Auto/Physical/FpcVersion.pm
144 lib/CXGN/CDBI/Auto/Physical/ManualAssociations.pm
145 lib/CXGN/CDBI/Auto/Physical/OaPlausibility.pm
146 lib/CXGN/CDBI/Auto/Physical/OvergoAssociations.pm
147 lib/CXGN/CDBI/Auto/Physical/OvergoPlates.pm
148 lib/CXGN/CDBI/Auto/Physical/OvergoResults.pm
149 lib/CXGN/CDBI/Auto/Physical/OvergoVersion.pm
150 lib/CXGN/CDBI/Auto/Physical/PlausibleBacsInAllContigs.pm
151 lib/CXGN/CDBI/Auto/Physical/ProbeMarkers.pm
152 lib/CXGN/CDBI/Auto/Physical/Species.pm
153 lib/CXGN/CDBI/Auto/Physical/TentativeAssociationConflictGroups.pm
154 lib/CXGN/CDBI/Auto/Physical/TentativeOvergoAssociations.pm
155 lib/CXGN/CDBI/Auto/Physical/Users.pm
156 lib/CXGN/CDBI/Auto/README
157 lib/CXGN/CDBI/Auto/SGN/Accession.pm
158 lib/CXGN/CDBI/Auto/SGN/AccessionNames.pm
159 lib/CXGN/CDBI/Auto/SGN/AnnotationTargetType.pm
160 lib/CXGN/CDBI/Auto/SGN/Authors.pm
161 lib/CXGN/CDBI/Auto/SGN/BlastAnnotations.pm
162 lib/CXGN/CDBI/Auto/SGN/BlastDb.pm
163 lib/CXGN/CDBI/Auto/SGN/BlastDbGroup.pm
164 lib/CXGN/CDBI/Auto/SGN/BlastDefline.pm
165 lib/CXGN/CDBI/Auto/SGN/BlastHits.pm
166 lib/CXGN/CDBI/Auto/SGN/BlastTargets.pm
167 lib/CXGN/CDBI/Auto/SGN/Cds.pm
168 lib/CXGN/CDBI/Auto/SGN/Clone.pm
169 lib/CXGN/CDBI/Auto/SGN/CloningVector.pm
170 lib/CXGN/CDBI/Auto/SGN/CommonName.pm
171 lib/CXGN/CDBI/Auto/SGN/CosiiOrtholog.pm
172 lib/CXGN/CDBI/Auto/SGN/CosMarkers.pm
173 lib/CXGN/CDBI/Auto/SGN/DeprecatedLinkageGroups.pm
174 lib/CXGN/CDBI/Auto/SGN/DeprecatedMapCross.pm
175 lib/CXGN/CDBI/Auto/SGN/DeprecatedMapdata.pm
176 lib/CXGN/CDBI/Auto/SGN/DeprecatedMaps.pm
177 lib/CXGN/CDBI/Auto/SGN/DeprecatedMarkerConfidences.pm
178 lib/CXGN/CDBI/Auto/SGN/DeprecatedMarkerLocations.pm
179 lib/CXGN/CDBI/Auto/SGN/DeprecatedMarkers.pm
180 lib/CXGN/CDBI/Auto/SGN/DeprecatedMarkerTypes.pm
181 lib/CXGN/CDBI/Auto/SGN/DerivedFromSource.pm
182 lib/CXGN/CDBI/Auto/SGN/Domain.pm
183 lib/CXGN/CDBI/Auto/SGN/DomainMatch.pm
184 lib/CXGN/CDBI/Auto/SGN/EnzymeRestrictionSites.pm
185 lib/CXGN/CDBI/Auto/SGN/Enzymes.pm
186 lib/CXGN/CDBI/Auto/SGN/Est.pm
187 lib/CXGN/CDBI/Auto/SGN/EstDbxref.pm
188 lib/CXGN/CDBI/Auto/SGN/EstsMappedByClone.pm
189 lib/CXGN/CDBI/Auto/SGN/ExperimentType.pm
190 lib/CXGN/CDBI/Auto/SGN/Facility.pm
191 lib/CXGN/CDBI/Auto/SGN/Family.pm
192 lib/CXGN/CDBI/Auto/SGN/FamilyBuild.pm
193 lib/CXGN/CDBI/Auto/SGN/FamilyMember.pm
194 lib/CXGN/CDBI/Auto/SGN/FamilyTree.pm
195 lib/CXGN/CDBI/Auto/SGN/FishChromatinDensityConstants.pm
196 lib/CXGN/CDBI/Auto/SGN/FishExperimenter.pm
197 lib/CXGN/CDBI/Auto/SGN/FishFile.pm
198 lib/CXGN/CDBI/Auto/SGN/FishImage.pm
199 lib/CXGN/CDBI/Auto/SGN/FishKaryotypeConstants.pm
200 lib/CXGN/CDBI/Auto/SGN/FishKaryotypeConstantsOld.pm
201 lib/CXGN/CDBI/Auto/SGN/FishResult.pm
202 lib/CXGN/CDBI/Auto/SGN/FishResultComposite.pm
203 lib/CXGN/CDBI/Auto/SGN/Go.pm
204 lib/CXGN/CDBI/Auto/SGN/GroupLinkage.pm
205 lib/CXGN/CDBI/Auto/SGN/Groups.pm
206 lib/CXGN/CDBI/Auto/SGN/IdLinkage.pm
207 lib/CXGN/CDBI/Auto/SGN/IlInfo.pm
208 lib/CXGN/CDBI/Auto/SGN/Interpro.pm
209 lib/CXGN/CDBI/Auto/SGN/InterproGo.pm
210 lib/CXGN/CDBI/Auto/SGN/Library.pm
211 lib/CXGN/CDBI/Auto/SGN/LinkageGroup.pm
212 lib/CXGN/CDBI/Auto/SGN/LocTypes.pm
213 lib/CXGN/CDBI/Auto/SGN/ManualAnnotations.pm
214 lib/CXGN/CDBI/Auto/SGN/ManualCensorReasons.pm
215 lib/CXGN/CDBI/Auto/SGN/Map.pm
216 lib/CXGN/CDBI/Auto/SGN/MapVersion.pm
217 lib/CXGN/CDBI/Auto/SGN/Marker.pm
218 lib/CXGN/CDBI/Auto/SGN/MarkerAlias.pm
219 lib/CXGN/CDBI/Auto/SGN/MarkerCollectible.pm
220 lib/CXGN/CDBI/Auto/SGN/MarkerCollection.pm
221 lib/CXGN/CDBI/Auto/SGN/MarkerConfidence.pm
222 lib/CXGN/CDBI/Auto/SGN/MarkerDerivedFrom.pm
223 lib/CXGN/CDBI/Auto/SGN/MarkerExperiment.pm
224 lib/CXGN/CDBI/Auto/SGN/MarkerLocation.pm
225 lib/CXGN/CDBI/Auto/SGN/MarkerToMap.pm
226 lib/CXGN/CDBI/Auto/SGN/Metadata.pm
227 lib/CXGN/CDBI/Auto/SGN/Microarray.pm
228 lib/CXGN/CDBI/Auto/SGN/Misc.pm
229 lib/CXGN/CDBI/Auto/SGN/Organism.pm
230 lib/CXGN/CDBI/Auto/SGN/Organismprop.pm
231 lib/CXGN/CDBI/Auto/SGN/PcrExpAccession.pm
232 lib/CXGN/CDBI/Auto/SGN/PcrExperiment.pm
233 lib/CXGN/CDBI/Auto/SGN/PcrProduct.pm
234 lib/CXGN/CDBI/Auto/SGN/PMarkers.pm
235 lib/CXGN/CDBI/Auto/SGN/PrimerUnigeneMatch.pm
236 lib/CXGN/CDBI/Auto/SGN/QcReport.pm
237 lib/CXGN/CDBI/Auto/SGN/RflpMarkers.pm
238 lib/CXGN/CDBI/Auto/SGN/RflpSequences.pm
239 lib/CXGN/CDBI/Auto/SGN/RflpUnigeneAssociations.pm
240 lib/CXGN/CDBI/Auto/SGN/Seqread.pm
241 lib/CXGN/CDBI/Auto/SGN/Sequence.pm
242 lib/CXGN/CDBI/Auto/SGN/Ssr.pm
243 lib/CXGN/CDBI/Auto/SGN/SsrPrimerUnigeneMatches.pm
244 lib/CXGN/CDBI/Auto/SGN/SsrRepeats.pm
245 lib/CXGN/CDBI/Auto/SGN/SubmitUser.pm
246 lib/CXGN/CDBI/Auto/SGN/Taxonomy.pm
247 lib/CXGN/CDBI/Auto/SGN/TempCapsCorrespondence.pm
248 lib/CXGN/CDBI/Auto/SGN/TempMapCorrespondence.pm
249 lib/CXGN/CDBI/Auto/SGN/TempMarkerCorrespondence.pm
250 lib/CXGN/CDBI/Auto/SGN/TigrtcIndex.pm
251 lib/CXGN/CDBI/Auto/SGN/TigrtcMembership.pm
252 lib/CXGN/CDBI/Auto/SGN/TigrtcTracking.pm
253 lib/CXGN/CDBI/Auto/SGN/TmMarkers.pm
254 lib/CXGN/CDBI/Auto/SGN/TmMarkersSequences.pm
255 lib/CXGN/CDBI/Auto/SGN/TrimFeature.pm
256 lib/CXGN/CDBI/Auto/SGN/TrimFeatureTypes.pm
257 lib/CXGN/CDBI/Auto/SGN/Types.pm
258 lib/CXGN/CDBI/Auto/SGN/Unigene.pm
259 lib/CXGN/CDBI/Auto/SGN/UnigeneBuild.pm
260 lib/CXGN/CDBI/Auto/SGN/UnigeneConsensi.pm
261 lib/CXGN/CDBI/Auto/SGN/UnigeneMember.pm
262 lib/CXGN/CDBI/Auto/SGNPeople/BacStatus.pm
263 lib/CXGN/CDBI/Auto/SGNPeople/BacStatusLog.pm
264 lib/CXGN/CDBI/Auto/SGNPeople/CloneIlMappingBinLog.pm
265 lib/CXGN/CDBI/Auto/SGNPeople/CloneValidationLog.pm
266 lib/CXGN/CDBI/Auto/SGNPeople/CloneVerificationLog.pm
267 lib/CXGN/CDBI/Auto/SGNPeople/ForumPost.pm
268 lib/CXGN/CDBI/Auto/SGNPeople/ForumTopic.pm
269 lib/CXGN/CDBI/Auto/SGNPeople/List.pm
270 lib/CXGN/CDBI/Auto/SGNPeople/ListItem.pm
271 lib/CXGN/CDBI/Auto/SGNPeople/SpCloneIlMappingSegmentLog.pm
272 lib/CXGN/CDBI/Auto/SGNPeople/SpGroup.pm
273 lib/CXGN/CDBI/Auto/SGNPeople/SpGroupMember.pm
274 lib/CXGN/CDBI/Auto/SGNPeople/SpLoginOld.pm
275 lib/CXGN/CDBI/Auto/SGNPeople/SpOrganisms.pm
276 lib/CXGN/CDBI/Auto/SGNPeople/SpOrganization.pm
277 lib/CXGN/CDBI/Auto/SGNPeople/SpOrganizationPerson.pm
278 lib/CXGN/CDBI/Auto/SGNPeople/SpPapers.pm
279 lib/CXGN/CDBI/Auto/SGNPeople/SpPerson.pm
280 lib/CXGN/CDBI/Auto/SGNPeople/SpPersonOrganisms.pm
281 lib/CXGN/CDBI/Auto/SGNPeople/SpProject.pm
282 lib/CXGN/CDBI/Auto/SGNPeople/SpProjectIlMappingCloneLog.pm
283 lib/CXGN/CDBI/Auto/SGNPeople/SpProjectOrganization.pm
284 lib/CXGN/CDBI/Auto/SGNPeople/SpProjectPerson.pm
285 lib/CXGN/CDBI/Auto/SGNPeople/UserMap.pm
286 lib/CXGN/CDBI/Auto/SGNPeople/UserMapData.pm
287 lib/CXGN/CDBI/Auto/SGNSubmit/Facility.pm
288 lib/CXGN/CDBI/Auto/SGNSubmit/Library.pm
289 lib/CXGN/CDBI/Auto/SGNSubmit/Seqread.pm
290 lib/CXGN/CDBI/Auto/SGNSubmit/SubmitUser.pm
291 lib/CXGN/CDBI/Auto/TomatoGFF/Fattribute.pm
292 lib/CXGN/CDBI/Auto/TomatoGFF/FattributeToFeature.pm
293 lib/CXGN/CDBI/Auto/TomatoGFF/Fdata.pm
294 lib/CXGN/CDBI/Auto/TomatoGFF/Fdna.pm
295 lib/CXGN/CDBI/Auto/TomatoGFF/Fgroup.pm
296 lib/CXGN/CDBI/Auto/TomatoGFF/Fmeta.pm
297 lib/CXGN/CDBI/Auto/TomatoGFF/Ftype.pm
298 lib/CXGN/CDBI/cdbigen.pl
299 lib/CXGN/CDBI/Class/DBI.pm
300 lib/CXGN/CDBI/Class/DBI/TestSampler.pm
301 lib/CXGN/CDBI/SGN/Accession.pm
302 lib/CXGN/CDBI/SGN/AccessionNames.pm
303 lib/CXGN/CDBI/SGN/CloningVector.pm
304 lib/CXGN/CDBI/SGN/EST.pm
305 lib/CXGN/CDBI/SGN/Groups.pm
306 lib/CXGN/CDBI/SGN/Organism.pm
307 lib/CXGN/CDBI/SGN/QCReport.pm
308 lib/CXGN/CDBI/SGN/Unigene.pm
309 lib/CXGN/CDBI/SGN/UnigeneBuild.pm
310 lib/CXGN/CDBI/SGN/UnigeneConsensi.pm
311 lib/CXGN/CDBI/SGN/UnigeneMember.pm
312 lib/CXGN/CDBI/SGNPeople/BacStatus.pm
313 lib/CXGN/Chado/CV.pm
314 lib/CXGN/Chado/Cvterm.pm
315 lib/CXGN/Chado/Cvterm/CvtermRanking.pm
316 lib/CXGN/Chado/Db.pm
317 lib/CXGN/Chado/Dbxref.pm
318 lib/CXGN/Chado/Dbxref/DbxrefI.pm
319 lib/CXGN/Chado/Dbxref/EvidenceI.pm
320 lib/CXGN/Chado/Feature.pm
321 lib/CXGN/Chado/FeatureLoc.pm
322 lib/CXGN/Chado/Main.pm
323 lib/CXGN/Chado/Ontology.pm
324 lib/CXGN/Chado/Organism.pm
325 lib/CXGN/Chado/Phenotype.pm
326 lib/CXGN/Chado/Pubauthor.pm
327 lib/CXGN/Chado/Publication.pm
328 lib/CXGN/Chado/Relationship.pm
329 lib/CXGN/Chado/Stock.pm
330 lib/CXGN/Chromatogram.pm
331 lib/CXGN/Chromatogram/Draw.pm
332 lib/CXGN/Class/DBI.pm
333 lib/CXGN/Class/Exporter.pm
334 lib/CXGN/Class/MethodMaker.pm
335 lib/CXGN/CloneSequencing/Sequence.pm
336 lib/CXGN/Cluster.pm
337 lib/CXGN/Cluster/ClusterSet.pm
338 lib/CXGN/Cluster/Match.pm
339 lib/CXGN/Cluster/Object.pm
340 lib/CXGN/Cluster/Precluster.pm
341 lib/CXGN/Config.pm
342 lib/CXGN/Configuration.pm
343 lib/CXGN/Cview.pm
344 lib/CXGN/Cvterms.pm
345 lib/CXGN/DB/Connection.pm
346 lib/CXGN/DB/Copy.pm
347 lib/CXGN/DB/DBICFactory.pm
348 lib/CXGN/DB/Ima.pm
349 lib/CXGN/DB/InsertDBH.pm
350 lib/CXGN/DB/Loader.pm
351 lib/CXGN/DB/Map.pm
352 lib/CXGN/DB/ModifiableI.pm
353 lib/CXGN/DB/Object.pm
354 lib/CXGN/DB/Phenotype.pm
355 lib/CXGN/DB/Physical.pm
356 lib/CXGN/DB/Production.pm
357 lib/CXGN/DB/Sandbox.pm
358 lib/CXGN/DB/SQLLibrarian.pm
359 lib/CXGN/DB/SQLWrappers.pm
360 lib/CXGN/Debug.pm
361 lib/CXGN/Feed.pm
362 lib/CXGN/FileRepository.pm
363 lib/CXGN/FileRepository/FileClass.pm
364 lib/CXGN/FileRepository/VersionedFile.pm
365 lib/CXGN/Fish.pm
366 lib/CXGN/Garbage/Arguments.pm
367 lib/CXGN/Garbage/BACDB.pm
368 lib/CXGN/Garbage/cmdline_args.pm
369 lib/CXGN/Garbage/job_dispatch.pm
370 lib/CXGN/Garbage/local_db_link.pm
371 lib/CXGN/Garbage/LocalDB.pm
372 lib/CXGN/Garbage/n_to_p_trans.pm
373 lib/CXGN/Garbage/physical_db_tools.pm
374 lib/CXGN/Garbage/PhysicalDB.pm
375 lib/CXGN/Garbage/sigpep_finder_io.pm
376 lib/CXGN/GEM/.ExperimentalDesign.pm.swp
377 lib/CXGN/GEM/.Platform.pm.swp
378 lib/CXGN/GEM/Experiment.pm
379 lib/CXGN/GEM/ExperimentalDesign.pm
380 lib/CXGN/GEM/Expression.pm
381 lib/CXGN/GEM/Hybridization.pm
382 lib/CXGN/GEM/Platform.pm
383 lib/CXGN/GEM/Schema.pm
384 lib/CXGN/GEM/Schema/GeClusterAnalysis.pm
385 lib/CXGN/GEM/Schema/GeClusterMember.pm
386 lib/CXGN/GEM/Schema/GeClusterProfile.pm
387 lib/CXGN/GEM/Schema/GeCorrelationAnalysis.pm
388 lib/CXGN/GEM/Schema/GeCorrelationMember.pm
389 lib/CXGN/GEM/Schema/GeDataAnalysisProcess.pm
390 lib/CXGN/GEM/Schema/GeDiffExpression.pm
391 lib/CXGN/GEM/Schema/GeExperiment.pm
392 lib/CXGN/GEM/Schema/GeExperimentalDesign.pm
393 lib/CXGN/GEM/Schema/GeExperimentalDesignDbxref.pm
394 lib/CXGN/GEM/Schema/GeExperimentalDesignPub.pm
395 lib/CXGN/GEM/Schema/GeExperimentAnalysisGroup.pm
396 lib/CXGN/GEM/Schema/GeExperimentAnalysisMember.pm
397 lib/CXGN/GEM/Schema/GeExperimentDbxref.pm
398 lib/CXGN/GEM/Schema/GeExpressionByExperiment.pm
399 lib/CXGN/GEM/Schema/GeFluorescanning.pm
400 lib/CXGN/GEM/Schema/GeHybridization.pm
401 lib/CXGN/GEM/Schema/GePlatform.pm
402 lib/CXGN/GEM/Schema/GePlatformDbxref.pm
403 lib/CXGN/GEM/Schema/GePlatformDesign.pm
404 lib/CXGN/GEM/Schema/GePlatformPub.pm
405 lib/CXGN/GEM/Schema/GeProbe.pm
406 lib/CXGN/GEM/Schema/GeProbeExpression.pm
407 lib/CXGN/GEM/Schema/GeProbeSpot.pm
408 lib/CXGN/GEM/Schema/GeProbeSpotCoordinate.pm
409 lib/CXGN/GEM/Schema/GeProfileElement.pm
410 lib/CXGN/GEM/Schema/GeTarget.pm
411 lib/CXGN/GEM/Schema/GeTargetDbxref.pm
412 lib/CXGN/GEM/Schema/GeTargetElement.pm
413 lib/CXGN/GEM/Schema/GeTechnologyType.pm
414 lib/CXGN/GEM/Schema/GeTemplate.pm
415 lib/CXGN/GEM/Schema/GeTemplateDbiref.pm
416 lib/CXGN/GEM/Schema/GeTemplateDbxref.pm
417 lib/CXGN/GEM/Schema/GeTemplateDiffExpression.pm
418 lib/CXGN/GEM/Schema/GeTemplateExpression.pm
419 lib/CXGN/GEM/Target.pm
420 lib/CXGN/GEM/TechnologyType.pm
421 lib/CXGN/GEM/Template.pm
422 lib/CXGN/GEM/Test.pm
423 lib/CXGN/Genomic/BACMarkerAssoc.pm
424 lib/CXGN/Genomic/BlastDefline.pm
425 lib/CXGN/Genomic/BlastHit.pm
426 lib/CXGN/Genomic/BlastQuery.pm
427 lib/CXGN/Genomic/Chromat.pm
428 lib/CXGN/Genomic/Clone.pm
429 lib/CXGN/Genomic/CloneIdentifiers.pm
430 lib/CXGN/Genomic/CloneNameParser.pm
431 lib/CXGN/Genomic/CloneType.pm
432 lib/CXGN/Genomic/Config.pm
433 lib/CXGN/Genomic/GenbankSubmission.pm
434 lib/CXGN/Genomic/GSS.pm
435 lib/CXGN/Genomic/GSSSubmittedToGenbank.pm
436 lib/CXGN/Genomic/Library.pm
437 lib/CXGN/Genomic/LibraryAnnotationDB.pm
438 lib/CXGN/Genomic/QCReport.pm
439 lib/CXGN/Genomic/QuerySourceType.pm
440 lib/CXGN/Genomic/ReadClass.pm
441 lib/CXGN/Genomic/Search/Clone.pm
442 lib/CXGN/Genomic/Search/Clone/Query.pm
443 lib/CXGN/Genomic/Search/Clone/Result.pm
444 lib/CXGN/Genomic/Search/GSS.pm
445 lib/CXGN/Genomic/Search/GSS/Query.pm
446 lib/CXGN/Genomic/Search/GSS/Result.pm
447 lib/CXGN/Genomic/Tools.pm
448 lib/CXGN/Glossary.pm
449 lib/CXGN/Graphics/BlastGraph.pm
450 lib/CXGN/Image.pm
451 lib/CXGN/Image/GDImage.pm
452 lib/CXGN/IndexedLog.pm
453 lib/CXGN/Insitu.pm
454 lib/CXGN/Insitu/DB.pm
455 lib/CXGN/Insitu/Experiment.pm
456 lib/CXGN/Insitu/ExperimentSearch.pm
457 lib/CXGN/Insitu/Form.pm
458 lib/CXGN/Insitu/FormHash.pm
459 lib/CXGN/Insitu/Image.pm
460 lib/CXGN/Insitu/Organism.pm
461 lib/CXGN/Insitu/Probe.pm
462 lib/CXGN/Insitu/Tag.pm
463 lib/CXGN/Insitu/Toolbar.pm
464 lib/CXGN/LinkageGroup.pm
465 lib/CXGN/Map.pm
466 lib/CXGN/Map/Tools.pm
467 lib/CXGN/Map/Version.pm
468 lib/CXGN/Marker.pm
469 lib/CXGN/Marker/Location.pm
470 lib/CXGN/Marker/LocMarker.pm
471 lib/CXGN/Marker/LocMarker/basic_locmarker_test.t
472 lib/CXGN/Marker/Modifiable.pm
473 lib/CXGN/Marker/PCR/Experiment.pm
474 lib/CXGN/Marker/PCR/Product.pm
475 lib/CXGN/Marker/RFLP/Experiment.pm
476 lib/CXGN/Marker/Search.pm
477 lib/CXGN/Marker/SNP/Schema.pm
478 lib/CXGN/Marker/SNP/Schema/Snp.pm
479 lib/CXGN/Marker/SNP/Schema/SnpDbxref.pm
480 lib/CXGN/Marker/SNP/Schema/SnpMaker.pm
481 lib/CXGN/Marker/SNP/Snp.pm
482 lib/CXGN/Marker/Tools.pm
483 lib/CXGN/Metadata.pm
484 lib/CXGN/Metadata/Dbipath.pm
485 lib/CXGN/Metadata/Dbiref.pm
486 lib/CXGN/Metadata/Dbpatch.pm
487 lib/CXGN/Metadata/Dbversion.pm
488 lib/CXGN/Metadata/Groups.pm
489 lib/CXGN/Metadata/Metadbdata.pm
490 lib/CXGN/Metadata/Schema.pm
491 lib/CXGN/Metadata/Schema/Attribution.pm
492 lib/CXGN/Metadata/Schema/AttributionTo.pm
493 lib/CXGN/Metadata/Schema/Comments.pm
494 lib/CXGN/Metadata/Schema/MdDbipath.pm
495 lib/CXGN/Metadata/Schema/MdDbiref.pm
496 lib/CXGN/Metadata/Schema/MdDbversion.pm
497 lib/CXGN/Metadata/Schema/MdFiles.pm
498 lib/CXGN/Metadata/Schema/MdGroupmembers.pm
499 lib/CXGN/Metadata/Schema/MdGroups.pm
500 lib/CXGN/Metadata/Schema/MdImage.pm
501 lib/CXGN/Metadata/Schema/MdMetadata.pm
502 lib/CXGN/Metadata/Schema/MdTag.pm
503 lib/CXGN/Metadata/Schema/MdTagImage.pm
504 lib/CXGN/Metadata/Schema/Roles.pm
505 lib/CXGN/MOBY/register.pl
506 lib/CXGN/MOBY/test_xml.example
507 lib/CXGN/People.pm
508 lib/CXGN/People/BACStatusLog.pm
509 lib/CXGN/People/Forum.pm
510 lib/CXGN/People/Forum/Post.pm
511 lib/CXGN/People/Forum/Topic.pm
512 lib/CXGN/People/Group.pm
513 lib/CXGN/People/Login.pm
514 lib/CXGN/People/Organism.pm
515 lib/CXGN/People/Organization.pm
516 lib/CXGN/People/PageComment.pm
517 lib/CXGN/People/Person.pm
518 lib/CXGN/People/Project.pm
519 lib/CXGN/People/UserMap.pm
520 lib/CXGN/People/UserMapData.pm
521 lib/CXGN/Phenotypes.pm
522 lib/CXGN/Phylo.pm
523 lib/CXGN/Phylo/Alignment.pm
524 lib/CXGN/Phylo/Alignment/Chart.pm
525 lib/CXGN/Phylo/Alignment/ImageObject.pm
526 lib/CXGN/Phylo/Alignment/Legend.pm
527 lib/CXGN/Phylo/Alignment/Member.pm
528 lib/CXGN/Phylo/Alignment/Ruler.pm
529 lib/CXGN/Phylo/Configuration.pm
530 lib/CXGN/Phylo/File.pm
531 lib/CXGN/Phylo/Image.pm
532 lib/CXGN/Phylo/Label.pm
533 lib/CXGN/Phylo/Layout.pm
534 lib/CXGN/Phylo/Node.pm
535 lib/CXGN/Phylo/Ortholog_group.pm
536 lib/CXGN/Phylo/Ortholog_group_factory.pm
537 lib/CXGN/Phylo/Parser.pm
538 lib/CXGN/Phylo/Renderer.pm
539 lib/CXGN/Phylo/Species_name_map.pm
540 lib/CXGN/Phylo/TLYstuff/utils.pm
541 lib/CXGN/Phylo/Tree.pm
542 lib/CXGN/Phylo/Tree_browser.pm
543 lib/CXGN/Phylo/TreePlus.pm
544 lib/CXGN/Phylo/Urec/rtree.cpp
545 lib/CXGN/Phylo/Urec/rtree.h
546 lib/CXGN/Phylo/Urec/urec
547 lib/CXGN/Phylo/Urec/urec.cpp
548 lib/CXGN/Phylo/Urec/urtree.cpp
549 lib/CXGN/Phylo/Urec/urtree.h
550 lib/CXGN/PotatoGenome/Config.pm
551 lib/CXGN/PotatoGenome/FileRepository.pm
552 lib/CXGN/Primers.pm
553 lib/CXGN/Publication.pm
554 lib/CXGN/Publish.pm
555 lib/CXGN/Publish/VersionedFile.pm
556 lib/CXGN/Search.pod
557 lib/CXGN/Search/BasicResult.pm
558 lib/CXGN/Search/CannedForms.pm
559 lib/CXGN/Search/DBI/CDBI.pm
560 lib/CXGN/Search/DBI/Simple.pm
561 lib/CXGN/Search/DBI/Simple/Query.pm
562 lib/CXGN/Search/DBI/Simple/WWWQuery.pm
563 lib/CXGN/Search/QueryI.pm
564 lib/CXGN/Search/ResultI.pm
565 lib/CXGN/Search/SearchI.pm
566 lib/CXGN/Search/WWWQuery.pm
567 lib/CXGN/Search/WWWResult.pm
568 lib/CXGN/Search/WWWResultI.pm
569 lib/CXGN/Search/WWWSearch.pm
570 lib/CXGN/Search/WWWSearchI.pm
571 lib/CXGN/Searches/Family.pm
572 lib/CXGN/Searches/Family/Query.pm
573 lib/CXGN/Searches/Family/Result.pm
574 lib/CXGN/Searches/GemExperiment.pm
575 lib/CXGN/Searches/GemExperiment/Query.pm
576 lib/CXGN/Searches/GemExperiment/Result.pm
577 lib/CXGN/Searches/GemPlatform.pm
578 lib/CXGN/Searches/GemPlatform/Query.pm
579 lib/CXGN/Searches/GemPlatform/Result.pm
580 lib/CXGN/Searches/GemTemplate.pm
581 lib/CXGN/Searches/GemTemplate/Query.pm
582 lib/CXGN/Searches/GemTemplate/Result.pm
583 lib/CXGN/Searches/Images.pm
584 lib/CXGN/Searches/Images/Query.pm
585 lib/CXGN/Searches/Images/Result.pm
586 lib/CXGN/Searches/Library.pm
587 lib/CXGN/Searches/Library/Query.pm
588 lib/CXGN/Searches/Library/Result.pm
589 lib/CXGN/Searches/People.pm
590 lib/CXGN/Searches/People/Query.pm
591 lib/CXGN/Searches/People/Result.pm
592 lib/CXGN/Secretary/Family.pm
593 lib/CXGN/Secretary/Gene.pm
594 lib/CXGN/Secretary/Query.pm
595 lib/CXGN/SNP.pm
596 lib/CXGN/SNP/Query.pm
597 lib/CXGN/SNP/scripts/install_schema.pl
598 lib/CXGN/Sunshine/Browser.pm
599 lib/CXGN/Sunshine/ImageElement.pm
600 lib/CXGN/Sunshine/Node.pm
601 lib/CXGN/Tag.pm
602 lib/CXGN/Tools/.File.pm.swp
603 lib/CXGN/Tools/.Pubmed.pm.swp
604 lib/CXGN/Tools/AnnotationConsensus.pm
605 lib/CXGN/Tools/Class.pm
606 lib/CXGN/Tools/Cluster.pm
607 lib/CXGN/Tools/Cluster/BayesTraits.pm
608 lib/CXGN/Tools/Cluster/MCLBlastLine.pm
609 lib/CXGN/Tools/Cluster/ModelPAUP.pm
610 lib/CXGN/Tools/Cluster/Muscle.pm
611 lib/CXGN/Tools/Cluster/SignalP.pm
612 lib/CXGN/Tools/Entrez.pm
613 lib/CXGN/Tools/ExtractSeq.pm
614 lib/CXGN/Tools/FeatureFetch.pm
615 lib/CXGN/Tools/FeatureTree.pm
616 lib/CXGN/Tools/File.pm
617 lib/CXGN/Tools/File/Fasta.pm
618 lib/CXGN/Tools/File/Spreadsheet.pm
619 lib/CXGN/Tools/File/Text.pm
620 lib/CXGN/Tools/Gene.pm
621 lib/CXGN/Tools/GetGaps.pm
622 lib/CXGN/Tools/Identifiers.pm
623 lib/CXGN/Tools/InterProGFF3.pm
624 lib/CXGN/Tools/List.pm
625 lib/CXGN/Tools/Organism.pm
626 lib/CXGN/Tools/Param.pm
627 lib/CXGN/Tools/Parse.pm
628 lib/CXGN/Tools/Parse/Fasta.pm
629 lib/CXGN/Tools/Parse/SignalP.pm
630 lib/CXGN/Tools/PgCatalog.pm
631 lib/CXGN/Tools/Pubmed.pm
632 lib/CXGN/Tools/RestrictionEnzyme.pm
633 lib/CXGN/Tools/Run.pm
634 lib/CXGN/Tools/Script.pm
635 lib/CXGN/Tools/Sequence.pm
636 lib/CXGN/Tools/Terminal.pm
637 lib/CXGN/Tools/Terminal/ETA.pm
638 lib/CXGN/Tools/Text.pm
639 lib/CXGN/Tools/Tsearch.pm
640 lib/CXGN/Tools/WebImageCache.pm
641 lib/CXGN/Tools/Wget.pm
642 lib/CXGN/Transcript/CDS.pm
643 lib/CXGN/Transcript/EST.pm
644 lib/CXGN/Transcript/Library.pm
645 lib/CXGN/Transcript/Unigene.pm
646 lib/CXGN/Transcript/UnigeneBuild.pm
647 lib/CXGN/Unigene/Search.pm
648 lib/CXGN/Unigene/Search/Query.pm
649 lib/CXGN/Unigene/Search/Result.pm
650 lib/CXGN/Unigene/Tools.pm
651 lib/CXGN/UserList/Handle.pm
652 lib/CXGN/UserList/Hotlist.pm
653 lib/CXGN/UserList/List.pm
654 lib/CXGN/UserList/ListItem.pm
655 lib/CXGN/UserPrefs.pm
656 lib/CXGN/UserPrefs/Register.pm
657 lib/File/Find/Rule/VersionedFile.pm
658 lib/MOBY/Adaptor/moby/DataAccessI.pm
659 lib/MOBY/Adaptor/moby/DataAdapterI.pm
660 lib/MOBY/Adaptor/moby/Impl/FetaQueryAdaptor.pm
661 lib/MOBY/Adaptor/moby/Impl/NamespaceDataAdapter.pm
662 lib/MOBY/Adaptor/moby/Impl/ObjectDataAdapter.pm
663 lib/MOBY/Adaptor/moby/Impl/ServiceInstanceDataAdapter.pm
664 lib/MOBY/Adaptor/moby/Impl/ServiceTypeDataAdapter.pm
665 lib/MOBY/Adaptor/moby/queryapi.pm
666 lib/MOBY/Adaptor/moby/queryapi/mysql.pm
667 lib/MOBY/authority.pm
668 lib/MOBY/Central.pm
669 lib/MOBY/central_db_connection.pm
670 lib/MOBY/Client/Central.pm
671 lib/MOBY/Client/CollectionArticle.pm
672 lib/MOBY/Client/OntologyServer.pm
673 lib/MOBY/Client/Registration.pm
674 lib/MOBY/Client/SecondaryArticle.pm
675 lib/MOBY/Client/Service.pm
676 lib/MOBY/Client/ServiceInstance.pm
677 lib/MOBY/Client/SimpleArticle.pm
678 lib/MOBY/Client/SimpleInput.pm
679 lib/MOBY/collection_input.pm
680 lib/MOBY/collection_output.pm
681 lib/MOBY/CommonSubs.pm
682 lib/MOBY/Config.pm
683 lib/MOBY/CrossReference.pm
684 lib/MOBY/dbConfig.pm
685 lib/MOBY/lsid/authority/authority.pl
686 lib/MOBY/lsid/authority/ClassResolver.pm
687 lib/MOBY/lsid/authority/dbConfigure.pm.template
688 lib/MOBY/lsid/authority/dbConnect.pm
689 lib/MOBY/lsid/authority/Error.pm
690 lib/MOBY/lsid/authority/lsid_resolver.kpf
691 lib/MOBY/lsid/authority/metadata.pl
692 lib/MOBY/lsid/authority/NamespaceResolver.pm
693 lib/MOBY/lsid/authority/PredicateResolver.pm
694 lib/MOBY/lsid/authority/RDFConfigure.pm
695 lib/MOBY/lsid/authority/RelationshipResolver.pm
696 lib/MOBY/lsid/authority/ServiceInstanceResolver.pm
697 lib/MOBY/lsid/authority/ServiceResolver.pm
698 lib/MOBY/MobyXMLConstants.pm
699 lib/MOBY/MobyXMLRetriever.pl
700 lib/MOBY/MOBYXSLT.pm
701 lib/MOBY/myScript.pl
702 lib/MOBY/mysql.pm
703 lib/MOBY/OntologyServer.pm
704 lib/MOBY/RDF/InOutArticlesRDF.pm
705 lib/MOBY/RDF/ServiceInstanceRDF.pm
706 lib/MOBY/secondary_input.pm
707 lib/MOBY/service_instance.pm
708 lib/MOBY/service_type.pm
709 lib/MOBY/simple_input.pm
710 lib/MOBY/simple_output.pm
711 lib/MOBY/xsl/parseMobyMessage.xsl
712 lib/SGN/Schema.pm
713 lib/SGN/Schema/Accession.pm
714 lib/SGN/Schema/AccessionName.pm
715 lib/SGN/Schema/AnnotationTargetType.pm
716 lib/SGN/Schema/Author.pm
717 lib/SGN/Schema/BlastAnnotation.pm
718 lib/SGN/Schema/BlastDb.pm
719 lib/SGN/Schema/BlastDbGroup.pm
720 lib/SGN/Schema/BlastDefline.pm
721 lib/SGN/Schema/BlastHit.pm
722 lib/SGN/Schema/BlastTarget.pm
723 lib/SGN/Schema/Cd.pm
724 lib/SGN/Schema/Clone.pm
725 lib/SGN/Schema/CloningVector.pm
726 lib/SGN/Schema/CommonName.pm
727 lib/SGN/Schema/CosiiOrtholog.pm
728 lib/SGN/Schema/CosMarker.pm
729 lib/SGN/Schema/DeprecatedLinkageGroup.pm
730 lib/SGN/Schema/DeprecatedMap.pm
731 lib/SGN/Schema/DeprecatedMapCross.pm
732 lib/SGN/Schema/DeprecatedMapdata.pm
733 lib/SGN/Schema/DeprecatedMarker.pm
734 lib/SGN/Schema/DeprecatedMarkerConfidence.pm
735 lib/SGN/Schema/DeprecatedMarkerLocation.pm
736 lib/SGN/Schema/DeprecatedMarkerType.pm
737 lib/SGN/Schema/DerivedFromSource.pm
738 lib/SGN/Schema/Domain.pm
739 lib/SGN/Schema/DomainMatch.pm
740 lib/SGN/Schema/Enzyme.pm
741 lib/SGN/Schema/EnzymeRestrictionSite.pm
742 lib/SGN/Schema/Est.pm
743 lib/SGN/Schema/EstDbxref.pm
744 lib/SGN/Schema/EstsMappedByClone.pm
745 lib/SGN/Schema/ExperimentType.pm
746 lib/SGN/Schema/Facility.pm
747 lib/SGN/Schema/Family.pm
748 lib/SGN/Schema/FamilyBuild.pm
749 lib/SGN/Schema/FamilyMember.pm
750 lib/SGN/Schema/FamilyTree.pm
751 lib/SGN/Schema/FishChromatinDensityConstant.pm
752 lib/SGN/Schema/FishExperimenter.pm
753 lib/SGN/Schema/FishFile.pm
754 lib/SGN/Schema/FishImage.pm
755 lib/SGN/Schema/FishKaryotypeConstant.pm
756 lib/SGN/Schema/FishKaryotypeConstantsOld.pm
757 lib/SGN/Schema/FishResult.pm
758 lib/SGN/Schema/FishResultComposite.pm
759 lib/SGN/Schema/Go.pm
760 lib/SGN/Schema/Group.pm
761 lib/SGN/Schema/GroupLinkage.pm
762 lib/SGN/Schema/IdLinkage.pm
763 lib/SGN/Schema/IlInfo.pm
764 lib/SGN/Schema/Interpro.pm
765 lib/SGN/Schema/InterproGo.pm
766 lib/SGN/Schema/Library.pm
767 lib/SGN/Schema/LinkageGroup.pm
768 lib/SGN/Schema/LocType.pm
769 lib/SGN/Schema/ManualAnnotation.pm
770 lib/SGN/Schema/ManualCensorReason.pm
771 lib/SGN/Schema/Map.pm
772 lib/SGN/Schema/MapVersion.pm
773 lib/SGN/Schema/Marker.pm
774 lib/SGN/Schema/MarkerAlia.pm
775 lib/SGN/Schema/MarkerCollectible.pm
776 lib/SGN/Schema/MarkerCollection.pm
777 lib/SGN/Schema/MarkerConfidence.pm
778 lib/SGN/Schema/MarkerDerivedFrom.pm
779 lib/SGN/Schema/MarkerExperiment.pm
780 lib/SGN/Schema/MarkerLocation.pm
781 lib/SGN/Schema/MarkerToMap.pm
782 lib/SGN/Schema/Metadata.pm
783 lib/SGN/Schema/Microarray.pm
784 lib/SGN/Schema/Misc.pm
785 lib/SGN/Schema/Organism.pm
786 lib/SGN/Schema/Organismprop.pm
787 lib/SGN/Schema/PcrExpAccession.pm
788 lib/SGN/Schema/PcrExperiment.pm
789 lib/SGN/Schema/PcrProduct.pm
790 lib/SGN/Schema/PMarker.pm
791 lib/SGN/Schema/PrimerUnigeneMatch.pm
792 lib/SGN/Schema/QcReport.pm
793 lib/SGN/Schema/RflpMarker.pm
794 lib/SGN/Schema/RflpSequence.pm
795 lib/SGN/Schema/RflpUnigeneAssociation.pm
796 lib/SGN/Schema/Seqread.pm
797 lib/SGN/Schema/Sequence.pm
798 lib/SGN/Schema/Ssr.pm
799 lib/SGN/Schema/SsrPrimerUnigeneMatch.pm
800 lib/SGN/Schema/SsrRepeat.pm
801 lib/SGN/Schema/SubmitUser.pm
802 lib/SGN/Schema/Taxonomy.pm
803 lib/SGN/Schema/TempCapsCorrespondence.pm
804 lib/SGN/Schema/TempMapCorrespondence.pm
805 lib/SGN/Schema/TempMarkerCorrespondence.pm
806 lib/SGN/Schema/TigrtcIndex.pm
807 lib/SGN/Schema/TigrtcMembership.pm
808 lib/SGN/Schema/TigrtcTracking.pm
809 lib/SGN/Schema/TmMarker.pm
810 lib/SGN/Schema/TmMarkersSequence.pm
811 lib/SGN/Schema/TrimFeature.pm
812 lib/SGN/Schema/TrimFeatureType.pm
813 lib/SGN/Schema/Type.pm
814 lib/SGN/Schema/Unigene.pm
815 lib/SGN/Schema/UnigeneBuild.pm
816 lib/SGN/Schema/UnigeneConsensi.pm
817 lib/SGN/Schema/UnigeneMember.pm
818 MANIFEST This list of files
819 out
820 out.log
821 out2.log
822 out3.log
823 t/CXGN/BioTools/agp.t
824 t/CXGN/BioTools/capsdesigner2.t
825 t/CXGN/BioTools/data/caps_designer.txt
826 t/CXGN/BioTools/data/chr04.v3.agp
827 t/CXGN/BioTools/data/chr09.v1.agp
828 t/CXGN/BioTools/data/CLUSTALtest1.txt
829 t/CXGN/BioTools/data/CLUSTALtest2.txt
830 t/CXGN/BioTools/data/FASTAtest1.txt
831 t/CXGN/BioTools/data/FASTAtest2.txt
832 t/CXGN/BioTools/data/FASTAtest3.txt
833 t/CXGN/BioTools/data/FASTAtest4.txt
834 t/CXGN/BioTools/data/test_seq_assembly.agp
835 t/CXGN/blastdb.t
836 t/CXGN/BlastDB/fileset.t
837 t/CXGN/Chado/browser_search.t
838 t/CXGN/Chado/cvterm.t
839 t/CXGN/Chado/organism.t
840 t/CXGN/Chado/phenotype.t
841 t/CXGN/Chado/publication.t
842 t/CXGN/Chado/relationship.t
843 t/CXGN/Class/dbi.t
844 t/CXGN/Class/exporter.t
845 t/CXGN/Class/methodmaker.t
846 t/CXGN/Cluster/cluster.t
847 t/CXGN/Cluster/data/test.seq
848 t/CXGN/Cluster/match.t
849 t/CXGN/config.t
850 t/CXGN/data/blastdb_test.nucleotide.nhr
851 t/CXGN/data/blastdb_test.nucleotide.nin
852 t/CXGN/data/blastdb_test.nucleotide.nsq
853 t/CXGN/data/blastdb_test.nucleotide.seq
854 t/CXGN/data/blastdb_test.protein.phr
855 t/CXGN/data/blastdb_test.protein.pin
856 t/CXGN/data/blastdb_test.protein.psq
857 t/CXGN/data/blastdb_test.protein.seq
858 t/CXGN/data/indexedlog.testlog.1
859 t/CXGN/data/test.pdf
860 t/CXGN/data/tv_test_1.JPG
861 t/CXGN/data/tv_test_1.png
862 t/CXGN/DB/connection.t
863 t/CXGN/DB/dbicfactory.t
864 t/CXGN/DB/dbicfactory_2.t
865 t/CXGN/DB/Map/map.t
866 t/CXGN/DB/Map/test_map2.t
867 t/CXGN/DB/object.t
868 t/CXGN/DB/test-sqllib.sqllib
869 t/CXGN/DB/test_sqllibrarian.t
870 t/CXGN/DB/test_sqlwrap.t
871 t/CXGN/debug.t
872 t/CXGN/filerepository.t
873 t/CXGN/GEM/experiment.t
874 t/CXGN/GEM/experimentaldesign.t
875 t/CXGN/GEM/expression.t
876 t/CXGN/GEM/hybridization.t
877 t/CXGN/GEM/platform.t
878 t/CXGN/GEM/po_functions_expdesign.t
879 t/CXGN/GEM/target.t
880 t/CXGN/GEM/technologytype.t
881 t/CXGN/GEM/template.t
882 t/CXGN/Genomic/clone.t
883 t/CXGN/Genomic/cloneidentifiers.t
884 t/CXGN/Genomic/clonenameparser.t
885 t/CXGN/Genomic/gss.t
886 t/CXGN/Genomic/library.t
887 t/CXGN/Genomic/Search/Clone/clonesearch.t
888 t/CXGN/Genomic/Search/GSS/gss_search.t
889 t/CXGN/Graphics/blast_report_1.txt
890 t/CXGN/Graphics/blast_report_2.txt
891 t/CXGN/Graphics/blastgraph.t
892 t/CXGN/Image.t
893 t/CXGN/indexedlog.t
894 t/CXGN/Map/test_centromere_stuff.t
895 t/CXGN/Map/test_map_version.t
896 t/CXGN/Marker/LocMarker/basic_locmarker_test.t
897 t/CXGN/Marker/test_clean_marker_name.t
898 t/CXGN/Marker/test_marker.t
899 t/CXGN/Metadata/dbipath.t
900 t/CXGN/Metadata/dbiref.t
901 t/CXGN/Metadata/dbversion.t
902 t/CXGN/Metadata/groups.t
903 t/CXGN/Metadata/metadbdata.t
904 t/CXGN/Page/formatting_helpers.t
905 t/CXGN/Page/webform.t
906 t/CXGN/People/bacstatuslog.t
907 t/CXGN/People/Forum/forum.t
908 t/CXGN/People/login.t
909 t/CXGN/People/organism.t
910 t/CXGN/People/person.t
911 t/CXGN/Phylo/layout.t
912 t/CXGN/Phylo/phylo.t
913 t/CXGN/Phylo/phylo_test.t
914 t/CXGN/PotatoGenome/filerepository.t
915 t/CXGN/publish.t
916 t/CXGN/Sunshine/test.t
917 t/CXGN/Tools/async_2.aux
918 t/CXGN/Tools/file.t
919 t/CXGN/Tools/gene.t
920 t/CXGN/Tools/identifiers.t
921 t/CXGN/Tools/InterProGFF3.t
922 t/CXGN/Tools/list.t
923 t/CXGN/Tools/pg_catalog.t
924 t/CXGN/Tools/run.t
925 t/CXGN/Tools/run_cluster.t
926 t/CXGN/Tools/script.t
927 t/CXGN/Tools/text.t
928 t/CXGN/Tools/web_image_cache.t
929 t/CXGN/Tools/wget.t
930 t/CXGN/Transcript/unigene.t
931 t/CXGN/Unigene/Search/test_unigene_search.t
932 t/CXGN/UserList/userlist.t
933 t/data/interpro.gff3
934 t/data/interpro_sample.xml
935 t/File/find_rule_versionedfile.t