Refactor preprocessing atom types.
[gromacs.git] / admin / reformat_all.sh
blob3dadb4fe9c09c0616f93dc806c478eff3a3da187
1 #!/bin/bash
3 # This file is part of the GROMACS molecular simulation package.
5 # Copyright (c) 2014,2015, by the GROMACS development team, led by
6 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
7 # and including many others, as listed in the AUTHORS file in the
8 # top-level source directory and at http://www.gromacs.org.
10 # GROMACS is free software; you can redistribute it and/or
11 # modify it under the terms of the GNU Lesser General Public License
12 # as published by the Free Software Foundation; either version 2.1
13 # of the License, or (at your option) any later version.
15 # GROMACS is distributed in the hope that it will be useful,
16 # but WITHOUT ANY WARRANTY; without even the implied warranty of
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
18 # Lesser General Public License for more details.
20 # You should have received a copy of the GNU Lesser General Public
21 # License along with GROMACS; if not, see
22 # http://www.gnu.org/licenses, or write to the Free Software Foundation,
23 # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
25 # If you want to redistribute modifications to GROMACS, please
26 # consider that scientific software is very special. Version
27 # control is crucial - bugs must be traceable. We will be happy to
28 # consider code for inclusion in the official distribution, but
29 # derived work must not be called official GROMACS. Details are found
30 # in the README & COPYING files - if they are missing, get the
31 # official version at http://www.gromacs.org.
33 # To help us fund GROMACS development, we humbly ask that you cite
34 # the research papers on the package. Check out http://www.gromacs.org.
36 # This script runs uncrustify, copyright header checks, or include sorter on
37 # all applicable files in the source tree.
39 # See `reformat_all.sh -h` for a brief usage, and docs/dev-manual/uncrustify.rst
40 # for more details (docs/dev-manual/gmxtree.rst for include sorter).
42 function usage() {
43 echo "usage: reformat_all.sh [-f|--force]"
44 echo " [--filter=(uncrustify|copyright|includesort)]"
45 echo " [--pattern=<pattern>] [<action>] [-B=<build dir>]"
46 echo "<action>: (list-files|uncrustify*|copyright|includesort) (*=default)"
49 filter=default
50 force=
51 patterns=()
52 action=uncrustify
53 for arg in "$@" ; do
54 if [[ "$arg" == "list-files" || "$arg" == "uncrustify" ||
55 "$arg" == "copyright" || "$arg" == "includesort" ]] ; then
56 action=$arg
57 elif [[ "$arg" == --filter=* ]] ; then
58 filter=${arg#--filter=}
59 elif [[ "$arg" == --pattern=* ]] ; then
60 patterns[${#patterns[@]}]=${arg#--pattern=}
61 elif [[ "$arg" == -B=* ]] ; then
62 builddir=${arg#-B=}
63 elif [[ "$arg" == "-f" || "$arg" == "--force" ]] ; then
64 force=1
65 elif [[ "$arg" == "-h" || "$arg" == "--help" ]] ; then
66 usage
67 exit 0
68 else
69 echo "Unknown option: $arg"
70 echo
71 usage
72 exit 2
74 done
76 if [[ ! "$force" && "$action" != "list-files" ]] ; then
77 if ! git diff-files --quiet ; then
78 echo "Modified files found in work tree. Use -f to override."
79 exit 1
83 case "$action" in
84 list-files)
85 command=cat
87 uncrustify)
88 # Check that uncrustify is present
89 if [ -z "$UNCRUSTIFY" ] ; then
90 echo "Please set the path to uncrustify using UNCRUSTIFY."
91 echo "Note that you need a custom version of uncrustify."
92 echo "See comments in the script file for how to get one."
93 exit 2
95 if ! which "$UNCRUSTIFY" 1>/dev/null ; then
96 echo "Uncrustify not found: $UNCRUSTIFY"
97 exit 2
99 command="xargs $UNCRUSTIFY -c admin/uncrustify.cfg --no-backup"
101 copyright)
102 command="xargs admin/copyright.py --check"
104 includesort)
105 if [ -z "${builddir}" ] ; then
106 echo "Build directory must be set with -B for includesort."
107 exit 2
109 command="docs/doxygen/includesorter.py -S . -B ${builddir} -F -"
112 echo "Unknown action: $action"
113 exit 2
114 esac
116 if [[ "$filter" == "default" ]] ; then
117 filter=$action
120 case "$filter" in
121 includesort)
122 filter_re="(uncrustify|includesort)"
124 uncrustify)
125 filter_re="(uncrustify|uncrustify_only)"
127 copyright)
128 filter_re="(uncrustify|copyright|includesort)"
131 echo "Unknown filter mode: $filter"
132 echo
133 usage
134 exit 2
135 esac
137 cd `git rev-parse --show-toplevel`
139 if ! git ls-files "${patterns[@]}" | git check-attr --stdin filter | \
140 sed -nEe "/${filter_re}$/ {s/:.*//;p;}" | $command ; then
141 echo "The reformatting command failed! Please check the output."
142 exit 1