src/gromacs/selection/tests/refdata/SelectionCollectionDataTest_HandlesUnsortedIndexGroupsInSelections.xml

   1 <?xml version="1.0"?>
   2 <?xml-stylesheet type="text/xsl" href="referencedata.xsl"?>
   3 <ReferenceData>
   4   <ParsedSelections Name="Parsed">
   5     <ParsedVariable Name="Variable1">
   6       <String Name="Input">foo = group "GrpUnsorted"</String>
   7     </ParsedVariable>
   8     <ParsedSelection Name="Selection1">
   9       <String Name="Input">group "GrpUnsorted"</String>
  10       <String Name="Name">GrpUnsorted</String>
  11       <String Name="Text">group "GrpUnsorted"</String>
  12       <Bool Name="Dynamic">false</Bool>
  13     </ParsedSelection>
  14     <ParsedSelection Name="Selection2">
  15       <String Name="Input">GrpUnsorted</String>
  16       <String Name="Name">GrpUnsorted</String>
  17       <String Name="Text">GrpUnsorted</String>
  18       <Bool Name="Dynamic">false</Bool>
  19     </ParsedSelection>
  20     <ParsedSelection Name="Selection3">
  21       <String Name="Input">2</String>
  22       <String Name="Name">GrpUnsorted</String>
  23       <String Name="Text">2</String>
  24       <Bool Name="Dynamic">false</Bool>
  25     </ParsedSelection>
  26     <ParsedSelection Name="Selection4">
  27       <String Name="Input">res_cog of group "GrpUnsorted"</String>
  28       <String Name="Name">res_cog of group "GrpUnsorted"</String>
  29       <String Name="Text">res_cog of group "GrpUnsorted"</String>
  30       <Bool Name="Dynamic">false</Bool>
  31     </ParsedSelection>
  32     <ParsedSelection Name="Selection5">
  33       <String Name="Input">group "GrpUnsorted" permute 2 1</String>
  34       <String Name="Name">group "GrpUnsorted" permute 2 1</String>
  35       <String Name="Text">group "GrpUnsorted" permute 2 1</String>
  36       <Bool Name="Dynamic">false</Bool>
  37     </ParsedSelection>
  38     <ParsedSelection Name="Selection6">
  39       <String Name="Input">foo</String>
  40       <String Name="Name">foo</String>
  41       <String Name="Text">foo</String>
  42       <Bool Name="Dynamic">false</Bool>
  43     </ParsedSelection>
  44   </ParsedSelections>
  45   <CompiledSelections Name="Compiled">
  46     <Selection Name="Selection1">
  47       <String Name="Name">GrpUnsorted</String>
  48       <Sequence Name="Atoms">
  49         <Int Name="Length">8</Int>
  50         <Int>0</Int>
  51         <Int>2</Int>
  52         <Int>1</Int>
  53         <Int>8</Int>
  54         <Int>6</Int>
  55         <Int>4</Int>
  56         <Int>2</Int>
  57         <Int>11</Int>
  58       </Sequence>
  59       <Sequence Name="Positions">
  60         <Int Name="Length">8</Int>
  61         <Position>
  62           <Sequence Name="Atoms">
  63             <Int Name="Length">1</Int>
  64             <Int>0</Int>
  65           </Sequence>
  66           <Int Name="RefId">0</Int>
  67           <Int Name="MappedId">0</Int>
  68         </Position>
  69         <Position>
  70           <Sequence Name="Atoms">
  71             <Int Name="Length">1</Int>
  72             <Int>2</Int>
  73           </Sequence>
  74           <Int Name="RefId">1</Int>
  75           <Int Name="MappedId">2</Int>
  76         </Position>
  77         <Position>
  78           <Sequence Name="Atoms">
  79             <Int Name="Length">1</Int>
  80             <Int>1</Int>
  81           </Sequence>
  82           <Int Name="RefId">2</Int>
  83           <Int Name="MappedId">1</Int>
  84         </Position>
  85         <Position>
  86           <Sequence Name="Atoms">
  87             <Int Name="Length">1</Int>
  88             <Int>8</Int>
  89           </Sequence>
  90           <Int Name="RefId">3</Int>
  91           <Int Name="MappedId">8</Int>
  92         </Position>
  93         <Position>
  94           <Sequence Name="Atoms">
  95             <Int Name="Length">1</Int>
  96             <Int>6</Int>
  97           </Sequence>
  98           <Int Name="RefId">4</Int>
  99           <Int Name="MappedId">6</Int>
 100         </Position>
 101         <Position>
 102           <Sequence Name="Atoms">
 103             <Int Name="Length">1</Int>
 104             <Int>4</Int>
 105           </Sequence>
 106           <Int Name="RefId">5</Int>
 107           <Int Name="MappedId">4</Int>
 108         </Position>
 109         <Position>
 110           <Sequence Name="Atoms">
 111             <Int Name="Length">1</Int>
 112             <Int>2</Int>
 113           </Sequence>
 114           <Int Name="RefId">6</Int>
 115           <Int Name="MappedId">2</Int>
 116         </Position>
 117         <Position>
 118           <Sequence Name="Atoms">
 119             <Int Name="Length">1</Int>
 120             <Int>11</Int>
 121           </Sequence>
 122           <Int Name="RefId">7</Int>
 123           <Int Name="MappedId">11</Int>
 124         </Position>
 125       </Sequence>
 126     </Selection>
 127     <Selection Name="Selection2">
 128       <String Name="Name">GrpUnsorted</String>
 129       <Sequence Name="Atoms">
 130         <Int Name="Length">8</Int>
 131         <Int>0</Int>
 132         <Int>2</Int>
 133         <Int>1</Int>
 134         <Int>8</Int>
 135         <Int>6</Int>
 136         <Int>4</Int>
 137         <Int>2</Int>
 138         <Int>11</Int>
 139       </Sequence>
 140       <Sequence Name="Positions">
 141         <Int Name="Length">8</Int>
 142         <Position>
 143           <Sequence Name="Atoms">
 144             <Int Name="Length">1</Int>
 145             <Int>0</Int>
 146           </Sequence>
 147           <Int Name="RefId">0</Int>
 148           <Int Name="MappedId">0</Int>
 149         </Position>
 150         <Position>
 151           <Sequence Name="Atoms">
 152             <Int Name="Length">1</Int>
 153             <Int>2</Int>
 154           </Sequence>
 155           <Int Name="RefId">1</Int>
 156           <Int Name="MappedId">2</Int>
 157         </Position>
 158         <Position>
 159           <Sequence Name="Atoms">
 160             <Int Name="Length">1</Int>
 161             <Int>1</Int>
 162           </Sequence>
 163           <Int Name="RefId">2</Int>
 164           <Int Name="MappedId">1</Int>
 165         </Position>
 166         <Position>
 167           <Sequence Name="Atoms">
 168             <Int Name="Length">1</Int>
 169             <Int>8</Int>
 170           </Sequence>
 171           <Int Name="RefId">3</Int>
 172           <Int Name="MappedId">8</Int>
 173         </Position>
 174         <Position>
 175           <Sequence Name="Atoms">
 176             <Int Name="Length">1</Int>
 177             <Int>6</Int>
 178           </Sequence>
 179           <Int Name="RefId">4</Int>
 180           <Int Name="MappedId">6</Int>
 181         </Position>
 182         <Position>
 183           <Sequence Name="Atoms">
 184             <Int Name="Length">1</Int>
 185             <Int>4</Int>
 186           </Sequence>
 187           <Int Name="RefId">5</Int>
 188           <Int Name="MappedId">4</Int>
 189         </Position>
 190         <Position>
 191           <Sequence Name="Atoms">
 192             <Int Name="Length">1</Int>
 193             <Int>2</Int>
 194           </Sequence>
 195           <Int Name="RefId">6</Int>
 196           <Int Name="MappedId">2</Int>
 197         </Position>
 198         <Position>
 199           <Sequence Name="Atoms">
 200             <Int Name="Length">1</Int>
 201             <Int>11</Int>
 202           </Sequence>
 203           <Int Name="RefId">7</Int>
 204           <Int Name="MappedId">11</Int>
 205         </Position>
 206       </Sequence>
 207     </Selection>
 208     <Selection Name="Selection3">
 209       <String Name="Name">GrpUnsorted</String>
 210       <Sequence Name="Atoms">
 211         <Int Name="Length">8</Int>
 212         <Int>0</Int>
 213         <Int>2</Int>
 214         <Int>1</Int>
 215         <Int>8</Int>
 216         <Int>6</Int>
 217         <Int>4</Int>
 218         <Int>2</Int>
 219         <Int>11</Int>
 220       </Sequence>
 221       <Sequence Name="Positions">
 222         <Int Name="Length">8</Int>
 223         <Position>
 224           <Sequence Name="Atoms">
 225             <Int Name="Length">1</Int>
 226             <Int>0</Int>
 227           </Sequence>
 228           <Int Name="RefId">0</Int>
 229           <Int Name="MappedId">0</Int>
 230         </Position>
 231         <Position>
 232           <Sequence Name="Atoms">
 233             <Int Name="Length">1</Int>
 234             <Int>2</Int>
 235           </Sequence>
 236           <Int Name="RefId">1</Int>
 237           <Int Name="MappedId">2</Int>
 238         </Position>
 239         <Position>
 240           <Sequence Name="Atoms">
 241             <Int Name="Length">1</Int>
 242             <Int>1</Int>
 243           </Sequence>
 244           <Int Name="RefId">2</Int>
 245           <Int Name="MappedId">1</Int>
 246         </Position>
 247         <Position>
 248           <Sequence Name="Atoms">
 249             <Int Name="Length">1</Int>
 250             <Int>8</Int>
 251           </Sequence>
 252           <Int Name="RefId">3</Int>
 253           <Int Name="MappedId">8</Int>
 254         </Position>
 255         <Position>
 256           <Sequence Name="Atoms">
 257             <Int Name="Length">1</Int>
 258             <Int>6</Int>
 259           </Sequence>
 260           <Int Name="RefId">4</Int>
 261           <Int Name="MappedId">6</Int>
 262         </Position>
 263         <Position>
 264           <Sequence Name="Atoms">
 265             <Int Name="Length">1</Int>
 266             <Int>4</Int>
 267           </Sequence>
 268           <Int Name="RefId">5</Int>
 269           <Int Name="MappedId">4</Int>
 270         </Position>
 271         <Position>
 272           <Sequence Name="Atoms">
 273             <Int Name="Length">1</Int>
 274             <Int>2</Int>
 275           </Sequence>
 276           <Int Name="RefId">6</Int>
 277           <Int Name="MappedId">2</Int>
 278         </Position>
 279         <Position>
 280           <Sequence Name="Atoms">
 281             <Int Name="Length">1</Int>
 282             <Int>11</Int>
 283           </Sequence>
 284           <Int Name="RefId">7</Int>
 285           <Int Name="MappedId">11</Int>
 286         </Position>
 287       </Sequence>
 288     </Selection>
 289     <Selection Name="Selection4">
 290       <String Name="Name">res_cog of group "GrpUnsorted"</String>
 291       <Sequence Name="Atoms">
 292         <Int Name="Length">8</Int>
 293         <Int>0</Int>
 294         <Int>2</Int>
 295         <Int>1</Int>
 296         <Int>8</Int>
 297         <Int>6</Int>
 298         <Int>4</Int>
 299         <Int>2</Int>
 300         <Int>11</Int>
 301       </Sequence>
 302       <Sequence Name="Positions">
 303         <Int Name="Length">5</Int>
 304         <Position>
 305           <Sequence Name="Atoms">
 306             <Int Name="Length">3</Int>
 307             <Int>0</Int>
 308             <Int>2</Int>
 309             <Int>1</Int>
 310           </Sequence>
 311           <Int Name="RefId">0</Int>
 312           <Int Name="MappedId">0</Int>
 313         </Position>
 314         <Position>
 315           <Sequence Name="Atoms">
 316             <Int Name="Length">2</Int>
 317             <Int>8</Int>
 318             <Int>6</Int>
 319           </Sequence>
 320           <Int Name="RefId">1</Int>
 321           <Int Name="MappedId">2</Int>
 322         </Position>
 323         <Position>
 324           <Sequence Name="Atoms">
 325             <Int Name="Length">1</Int>
 326             <Int>4</Int>
 327           </Sequence>
 328           <Int Name="RefId">2</Int>
 329           <Int Name="MappedId">1</Int>
 330         </Position>
 331         <Position>
 332           <Sequence Name="Atoms">
 333             <Int Name="Length">1</Int>
 334             <Int>2</Int>
 335           </Sequence>
 336           <Int Name="RefId">3</Int>
 337           <Int Name="MappedId">0</Int>
 338         </Position>
 339         <Position>
 340           <Sequence Name="Atoms">
 341             <Int Name="Length">1</Int>
 342             <Int>11</Int>
 343           </Sequence>
 344           <Int Name="RefId">4</Int>
 345           <Int Name="MappedId">3</Int>
 346         </Position>
 347       </Sequence>
 348     </Selection>
 349     <Selection Name="Selection5">
 350       <String Name="Name">group "GrpUnsorted" permute 2 1</String>
 351       <Sequence Name="Atoms">
 352         <Int Name="Length">8</Int>
 353         <Int>2</Int>
 354         <Int>0</Int>
 355         <Int>8</Int>
 356         <Int>1</Int>
 357         <Int>4</Int>
 358         <Int>6</Int>
 359         <Int>11</Int>
 360         <Int>2</Int>
 361       </Sequence>
 362       <Sequence Name="Positions">
 363         <Int Name="Length">8</Int>
 364         <Position>
 365           <Sequence Name="Atoms">
 366             <Int Name="Length">1</Int>
 367             <Int>2</Int>
 368           </Sequence>
 369           <Int Name="RefId">0</Int>
 370           <Int Name="MappedId">2</Int>
 371         </Position>
 372         <Position>
 373           <Sequence Name="Atoms">
 374             <Int Name="Length">1</Int>
 375             <Int>0</Int>
 376           </Sequence>
 377           <Int Name="RefId">1</Int>
 378           <Int Name="MappedId">0</Int>
 379         </Position>
 380         <Position>
 381           <Sequence Name="Atoms">
 382             <Int Name="Length">1</Int>
 383             <Int>8</Int>
 384           </Sequence>
 385           <Int Name="RefId">2</Int>
 386           <Int Name="MappedId">8</Int>
 387         </Position>
 388         <Position>
 389           <Sequence Name="Atoms">
 390             <Int Name="Length">1</Int>
 391             <Int>1</Int>
 392           </Sequence>
 393           <Int Name="RefId">3</Int>
 394           <Int Name="MappedId">1</Int>
 395         </Position>
 396         <Position>
 397           <Sequence Name="Atoms">
 398             <Int Name="Length">1</Int>
 399             <Int>4</Int>
 400           </Sequence>
 401           <Int Name="RefId">4</Int>
 402           <Int Name="MappedId">4</Int>
 403         </Position>
 404         <Position>
 405           <Sequence Name="Atoms">
 406             <Int Name="Length">1</Int>
 407             <Int>6</Int>
 408           </Sequence>
 409           <Int Name="RefId">5</Int>
 410           <Int Name="MappedId">6</Int>
 411         </Position>
 412         <Position>
 413           <Sequence Name="Atoms">
 414             <Int Name="Length">1</Int>
 415             <Int>11</Int>
 416           </Sequence>
 417           <Int Name="RefId">6</Int>
 418           <Int Name="MappedId">11</Int>
 419         </Position>
 420         <Position>
 421           <Sequence Name="Atoms">
 422             <Int Name="Length">1</Int>
 423             <Int>2</Int>
 424           </Sequence>
 425           <Int Name="RefId">7</Int>
 426           <Int Name="MappedId">2</Int>
 427         </Position>
 428       </Sequence>
 429     </Selection>
 430     <Selection Name="Selection6">
 431       <String Name="Name">foo</String>
 432       <Sequence Name="Atoms">
 433         <Int Name="Length">8</Int>
 434         <Int>0</Int>
 435         <Int>2</Int>
 436         <Int>1</Int>
 437         <Int>8</Int>
 438         <Int>6</Int>
 439         <Int>4</Int>
 440         <Int>2</Int>
 441         <Int>11</Int>
 442       </Sequence>
 443       <Sequence Name="Positions">
 444         <Int Name="Length">8</Int>
 445         <Position>
 446           <Sequence Name="Atoms">
 447             <Int Name="Length">1</Int>
 448             <Int>0</Int>
 449           </Sequence>
 450           <Int Name="RefId">0</Int>
 451           <Int Name="MappedId">0</Int>
 452         </Position>
 453         <Position>
 454           <Sequence Name="Atoms">
 455             <Int Name="Length">1</Int>
 456             <Int>2</Int>
 457           </Sequence>
 458           <Int Name="RefId">1</Int>
 459           <Int Name="MappedId">2</Int>
 460         </Position>
 461         <Position>
 462           <Sequence Name="Atoms">
 463             <Int Name="Length">1</Int>
 464             <Int>1</Int>
 465           </Sequence>
 466           <Int Name="RefId">2</Int>
 467           <Int Name="MappedId">1</Int>
 468         </Position>
 469         <Position>
 470           <Sequence Name="Atoms">
 471             <Int Name="Length">1</Int>
 472             <Int>8</Int>
 473           </Sequence>
 474           <Int Name="RefId">3</Int>
 475           <Int Name="MappedId">8</Int>
 476         </Position>
 477         <Position>
 478           <Sequence Name="Atoms">
 479             <Int Name="Length">1</Int>
 480             <Int>6</Int>
 481           </Sequence>
 482           <Int Name="RefId">4</Int>
 483           <Int Name="MappedId">6</Int>
 484         </Position>
 485         <Position>
 486           <Sequence Name="Atoms">
 487             <Int Name="Length">1</Int>
 488             <Int>4</Int>
 489           </Sequence>
 490           <Int Name="RefId">5</Int>
 491           <Int Name="MappedId">4</Int>
 492         </Position>
 493         <Position>
 494           <Sequence Name="Atoms">
 495             <Int Name="Length">1</Int>
 496             <Int>2</Int>
 497           </Sequence>
 498           <Int Name="RefId">6</Int>
 499           <Int Name="MappedId">2</Int>
 500         </Position>
 501         <Position>
 502           <Sequence Name="Atoms">
 503             <Int Name="Length">1</Int>
 504             <Int>11</Int>
 505           </Sequence>
 506           <Int Name="RefId">7</Int>
 507           <Int Name="MappedId">11</Int>
 508         </Position>
 509       </Sequence>
 510     </Selection>
 511   </CompiledSelections>
 512 </ReferenceData>