2 <?xml-stylesheet type="text/xsl" href="referencedata.xsl"?>
4 <OutputFiles Name="Files">
6 <GroFile Name="Header">
7 <String Name="Title">Protein (first fragment of regressiontests/complex/aminoacids.gro)</String>
8 <Int Name="Number of atoms">268</Int>
12 <String Name="Contents"><![CDATA[
15 ; This is a standalone topology file
20 ; Force field was read from the standard GROMACS share directory.
23 ; Include forcefield parameters
24 #include "oplsaa.ff/forcefield.itp"
31 ; nr type resnr residue atom cgnr charge mass typeB chargeB massB
32 ; residue 2 ALA rtp ALA q +1.0
33 1 MNH3 2 ALA MN1 1 0 8.51335
34 2 MNH3 2 ALA MN2 1 0 8.51335
35 3 opls_287 2 ALA N 1 -0.3 0
36 4 opls_290 2 ALA H1 1 0.33 0
37 5 opls_290 2 ALA H2 1 0.33 0
38 6 opls_290 2 ALA H3 1 0.33 0
39 7 opls_293B 2 ALA CA 1 0.25 13.019
40 8 opls_140 2 ALA HA 1 0.06 0
41 9 MCH3B 2 ALA MCB1 2 0 7.5175
42 10 MCH3B 2 ALA MCB2 2 0 7.5175
43 11 opls_135 2 ALA CB 2 -0.18 0
44 12 opls_140 2 ALA HB1 2 0.06 0
45 13 opls_140 2 ALA HB2 2 0.06 0
46 14 opls_140 2 ALA HB3 2 0.06 0
47 15 opls_235 2 ALA C 3 0.5 12.011
48 16 opls_236 2 ALA O 3 -0.5 15.9994 ; qtot 1
49 ; residue 3 CYS rtp CYSH q 0.0
50 17 opls_238 3 CYS N 4 -0.5 15.0147
51 18 opls_241 3 CYS H 4 0.3 0
52 19 opls_224B 3 CYS CA 4 0.14 13.019
53 20 opls_140 3 CYS HA 4 0.06 0
54 21 opls_206 3 CYS CB 5 0.06 14.027
55 22 opls_140 3 CYS HB1 5 0.06 0
56 23 opls_140 3 CYS HB2 5 0.06 0
57 24 opls_200 3 CYS SG 6 -0.335 32.06
58 25 opls_204 3 CYS HG 6 0.155 1.008
59 26 opls_235 3 CYS C 7 0.5 12.011
60 27 opls_236 3 CYS O 7 -0.5 15.9994 ; qtot 1
61 ; residue 4 ASP rtp ASP q -1.0
62 28 opls_238 4 ASP N 8 -0.5 15.0147
63 29 opls_241 4 ASP H 8 0.3 0
64 30 opls_224B 4 ASP CA 8 0.14 13.019
65 31 opls_140 4 ASP HA 8 0.06 0
66 32 opls_274 4 ASP CB 9 -0.22 14.027
67 33 opls_140 4 ASP HB1 9 0.06 0
68 34 opls_140 4 ASP HB2 9 0.06 0
69 35 opls_271 4 ASP CG 10 0.7 12.011
70 36 opls_272 4 ASP OD1 10 -0.8 15.9994
71 37 opls_272 4 ASP OD2 10 -0.8 15.9994
72 38 opls_235 4 ASP C 11 0.5 12.011
73 39 opls_236 4 ASP O 11 -0.5 15.9994 ; qtot 0
74 ; residue 5 GLU rtp GLU q -1.0
75 40 opls_238 5 GLU N 12 -0.5 15.0147
76 41 opls_241 5 GLU H 12 0.3 0
77 42 opls_224B 5 GLU CA 12 0.14 13.019
78 43 opls_140 5 GLU HA 12 0.06 0
79 44 opls_136 5 GLU CB 13 -0.12 14.027
80 45 opls_140 5 GLU HB1 13 0.06 0
81 46 opls_140 5 GLU HB2 13 0.06 0
82 47 opls_274 5 GLU CG 14 -0.22 14.027
83 48 opls_140 5 GLU HG1 14 0.06 0
84 49 opls_140 5 GLU HG2 14 0.06 0
85 50 opls_271 5 GLU CD 15 0.7 12.011
86 51 opls_272 5 GLU OE1 15 -0.8 15.9994
87 52 opls_272 5 GLU OE2 15 -0.8 15.9994
88 53 opls_235 5 GLU C 16 0.5 12.011
89 54 opls_236 5 GLU O 16 -0.5 15.9994 ; qtot -1
90 ; residue 6 PHE rtp PHE q 0.0
91 55 opls_238 6 PHE N 17 -0.5 15.0147
92 56 opls_241 6 PHE H 17 0.3 0
93 57 opls_224B 6 PHE CA 17 0.14 13.019
94 58 opls_140 6 PHE HA 17 0.06 0
95 59 opls_149 6 PHE CB 18 -0.005 14.027
96 60 opls_140 6 PHE HB1 18 0.06 0
97 61 opls_140 6 PHE HB2 18 0.06 0
98 62 opls_145 6 PHE CG 18 -0.115 12.011
99 63 opls_145 6 PHE CD1 19 -0.115 13.019
100 64 opls_146 6 PHE HD1 19 0.115 0
101 65 opls_145 6 PHE CD2 20 -0.115 13.019
102 66 opls_146 6 PHE HD2 20 0.115 0
103 67 opls_145 6 PHE CE1 21 -0.115 13.019
104 68 opls_146 6 PHE HE1 21 0.115 0
105 69 opls_145 6 PHE CE2 22 -0.115 13.019
106 70 opls_146 6 PHE HE2 22 0.115 0
107 71 opls_145 6 PHE CZ 23 -0.115 13.019
108 72 opls_146 6 PHE HZ 23 0.115 0
109 73 opls_235 6 PHE C 24 0.5 12.011
110 74 opls_236 6 PHE O 24 -0.5 15.9994 ; qtot -1
111 ; residue 7 GLY rtp GLY q 0.0
112 75 opls_238 7 GLY N 25 -0.5 15.0147
113 76 opls_241 7 GLY H 25 0.3 0
114 77 opls_223B 7 GLY CA 25 0.08 14.027
115 78 opls_140 7 GLY HA1 25 0.06 0
116 79 opls_140 7 GLY HA2 25 0.06 0
117 80 opls_235 7 GLY C 26 0.5 12.011
118 81 opls_236 7 GLY O 26 -0.5 15.9994 ; qtot -1
119 ; residue 8 HIS rtp HISE q 0.0
120 82 opls_238 8 HIS N 27 -0.5 15.0147
121 83 opls_241 8 HIS H 27 0.3 0
122 84 opls_224B 8 HIS CA 27 0.14 13.019
123 85 opls_140 8 HIS HA 27 0.06 0
124 86 opls_505 8 HIS CB 28 -0.005 14.027
125 87 opls_140 8 HIS HB1 28 0.06 0
126 88 opls_140 8 HIS HB2 28 0.06 0
127 89 opls_507 8 HIS CG 29 -0.015 12.011
128 90 opls_511 8 HIS ND1 29 -0.49 14.0067
129 91 opls_508 8 HIS CD2 30 0.015 13.019
130 92 opls_146 8 HIS HD2 30 0.115 0
131 93 opls_506 8 HIS CE1 31 0.295 13.019
132 94 opls_146 8 HIS HE1 31 0.115 0
133 95 opls_503 8 HIS NE2 32 -0.57 15.0147
134 96 opls_504 8 HIS HE2 32 0.42 0
135 97 opls_235 8 HIS C 33 0.5 12.011
136 98 opls_236 8 HIS O 33 -0.5 15.9994 ; qtot -1
137 ; residue 9 ILE rtp ILE q 0.0
138 99 opls_238 9 ILE N 34 -0.5 15.0147
139 100 opls_241 9 ILE H 34 0.3 0
140 101 opls_224B 9 ILE CA 34 0.14 13.019
141 102 opls_140 9 ILE HA 34 0.06 0
142 103 opls_137 9 ILE CB 35 -0.06 13.019
143 104 opls_140 9 ILE HB 35 0.06 0
144 105 opls_136 9 ILE CG1 36 -0.12 14.027
145 106 opls_140 9 ILE HG11 36 0.06 0
146 107 opls_140 9 ILE HG12 36 0.06 0
147 108 MCH3B 9 ILE MCG1 37 0 7.5175
148 109 MCH3B 9 ILE MCG2 37 0 7.5175
149 110 opls_135 9 ILE CG2 37 -0.18 0
150 111 opls_140 9 ILE HG21 37 0.06 0
151 112 opls_140 9 ILE HG22 37 0.06 0
152 113 opls_140 9 ILE HG23 37 0.06 0
153 114 MCH3B 9 ILE MCD1 38 0 7.5175
154 115 MCH3B 9 ILE MCD2 38 0 7.5175
155 116 opls_135 9 ILE CD 38 -0.18 0
156 117 opls_140 9 ILE HD1 38 0.06 0
157 118 opls_140 9 ILE HD2 38 0.06 0
158 119 opls_140 9 ILE HD3 38 0.06 0
159 120 opls_235 9 ILE C 39 0.5 12.011
160 121 opls_236 9 ILE O 39 -0.5 15.9994 ; qtot -1
161 ; residue 10 LYS rtp LYSH q +1.0
162 122 opls_238 10 LYS N 40 -0.5 15.0147
163 123 opls_241 10 LYS H 40 0.3 0
164 124 opls_224B 10 LYS CA 40 0.14 13.019
165 125 opls_140 10 LYS HA 40 0.06 0
166 126 opls_136 10 LYS CB 41 -0.12 14.027
167 127 opls_140 10 LYS HB1 41 0.06 0
168 128 opls_140 10 LYS HB2 41 0.06 0
169 129 opls_136 10 LYS CG 42 -0.12 14.027
170 130 opls_140 10 LYS HG1 42 0.06 0
171 131 opls_140 10 LYS HG2 42 0.06 0
172 132 opls_136 10 LYS CD 43 -0.12 14.027
173 133 opls_140 10 LYS HD1 43 0.06 0
174 134 opls_140 10 LYS HD2 43 0.06 0
175 135 opls_292 10 LYS CE 44 0.19 14.027
176 136 opls_140 10 LYS HE1 44 0.06 0
177 137 opls_140 10 LYS HE2 44 0.06 0
178 138 MNH3 10 LYS MNZ1 45 0 8.51535
179 139 MNH3 10 LYS MNZ2 45 0 8.51535
180 140 opls_287 10 LYS NZ 45 -0.3 0
181 141 opls_290 10 LYS HZ1 45 0.33 0
182 142 opls_290 10 LYS HZ2 45 0.33 0
183 143 opls_290 10 LYS HZ3 45 0.33 0
184 144 opls_235 10 LYS C 46 0.5 12.011
185 145 opls_236 10 LYS O 46 -0.5 15.9994 ; qtot 0
186 ; residue 11 LEU rtp LEU q 0.0
187 146 opls_238 11 LEU N 47 -0.5 15.0147
188 147 opls_241 11 LEU H 47 0.3 0
189 148 opls_224B 11 LEU CA 47 0.14 13.019
190 149 opls_140 11 LEU HA 47 0.06 0
191 150 opls_136 11 LEU CB 48 -0.12 14.027
192 151 opls_140 11 LEU HB1 48 0.06 0
193 152 opls_140 11 LEU HB2 48 0.06 0
194 153 opls_137 11 LEU CG 49 -0.06 13.019
195 154 opls_140 11 LEU HG 49 0.06 0
196 155 MCH3B 11 LEU MCD1 50 0 7.5175
197 156 MCH3B 11 LEU MCD2 50 0 7.5175
198 157 opls_135 11 LEU CD1 50 -0.18 0
199 158 opls_140 11 LEU HD11 50 0.06 0
200 159 opls_140 11 LEU HD12 50 0.06 0
201 160 opls_140 11 LEU HD13 50 0.06 0
202 161 MCH3B 11 LEU MCD1 51 0 7.5175
203 162 MCH3B 11 LEU MCD2 51 0 7.5175
204 163 opls_135 11 LEU CD2 51 -0.18 0
205 164 opls_140 11 LEU HD21 51 0.06 0
206 165 opls_140 11 LEU HD22 51 0.06 0
207 166 opls_140 11 LEU HD23 51 0.06 0
208 167 opls_235 11 LEU C 52 0.5 12.011
209 168 opls_236 11 LEU O 52 -0.5 15.9994 ; qtot 0
210 ; residue 12 MET rtp MET q 0.0
211 169 opls_238 12 MET N 53 -0.5 15.0147
212 170 opls_241 12 MET H 53 0.3 0
213 171 opls_224B 12 MET CA 53 0.14 13.019
214 172 opls_140 12 MET HA 53 0.06 0
215 173 opls_136 12 MET CB 54 -0.12 14.027
216 174 opls_140 12 MET HB1 54 0.06 0
217 175 opls_140 12 MET HB2 54 0.06 0
218 176 opls_210 12 MET CG 55 0.048 14.027
219 177 opls_140 12 MET HG1 55 0.06 0
220 178 opls_140 12 MET HG2 55 0.06 0
221 179 opls_202 12 MET SD 56 -0.335 32.06
222 180 MCH3A 12 MET MCE1 57 0 7.5175
223 181 MCH3A 12 MET MCE2 57 0 7.5175
224 182 opls_209 12 MET CE 57 -0.013 0
225 183 opls_140 12 MET HE1 57 0.06 0
226 184 opls_140 12 MET HE2 57 0.06 0
227 185 opls_140 12 MET HE3 57 0.06 0
228 186 opls_235 12 MET C 58 0.5 12.011
229 187 opls_236 12 MET O 58 -0.5 15.9994 ; qtot 0
230 ; residue 13 ASN rtp ASN q 0.0
231 188 opls_238 13 ASN N 59 -0.5 15.0147
232 189 opls_241 13 ASN H 59 0.3 0
233 190 opls_224B 13 ASN CA 60 0.14 13.019
234 191 opls_140 13 ASN HA 60 0.06 0
235 192 opls_136 13 ASN CB 61 -0.12 14.027
236 193 opls_140 13 ASN HB1 61 0.06 0
237 194 opls_140 13 ASN HB2 61 0.06 0
238 195 opls_235 13 ASN CG 62 0.5 12.011
239 196 opls_236 13 ASN OD1 62 -0.5 15.9994
240 197 opls_237 13 ASN ND2 63 -0.76 16.0227
241 198 opls_240 13 ASN HD21 63 0.38 0
242 199 opls_240 13 ASN HD22 63 0.38 0
243 200 opls_235 13 ASN C 64 0.5 12.011
244 201 opls_236 13 ASN O 64 -0.5 15.9994 ; qtot 0
245 ; residue 14 PRO rtp PRO q 0.0
246 202 opls_239 14 PRO N 65 -0.14 14.0067
247 203 opls_246 14 PRO CA 65 0.01 13.019
248 204 opls_140 14 PRO HA 65 0.06 0
249 205 opls_136 14 PRO CB 66 -0.12 14.027
250 206 opls_140 14 PRO HB1 66 0.06 0
251 207 opls_140 14 PRO HB2 66 0.06 0
252 208 opls_136 14 PRO CG 67 -0.12 14.027
253 209 opls_140 14 PRO HG1 67 0.06 0
254 210 opls_140 14 PRO HG2 67 0.06 0
255 211 opls_245 14 PRO CD 68 -0.05 14.027
256 212 opls_140 14 PRO HD1 68 0.06 0
257 213 opls_140 14 PRO HD2 68 0.06 0
258 214 opls_235 14 PRO C 69 0.5 12.011
259 215 opls_236 14 PRO O 69 -0.5 15.9994 ; qtot 0
260 ; residue 15 GLN rtp GLN q 0.0
261 216 opls_238 15 GLN N 70 -0.5 15.0147
262 217 opls_241 15 GLN H 70 0.3 0
263 218 opls_224B 15 GLN CA 71 0.14 13.019
264 219 opls_140 15 GLN HA 71 0.06 0
265 220 opls_136 15 GLN CB 72 -0.12 14.027
266 221 opls_140 15 GLN HB1 72 0.06 0
267 222 opls_140 15 GLN HB2 72 0.06 0
268 223 opls_136 15 GLN CG 73 -0.12 14.027
269 224 opls_140 15 GLN HG1 73 0.06 0
270 225 opls_140 15 GLN HG2 73 0.06 0
271 226 opls_235 15 GLN CD 74 0.5 12.011
272 227 opls_236 15 GLN OE1 74 -0.5 15.9994
273 228 opls_237 15 GLN NE2 75 -0.76 16.0227
274 229 opls_240 15 GLN HE21 75 0.38 0
275 230 opls_240 15 GLN HE22 75 0.38 0
276 231 opls_235 15 GLN C 76 0.5 12.011
277 232 opls_236 15 GLN O 76 -0.5 15.9994 ; qtot 0
278 ; residue 16 ARG rtp ARG q +1.0
279 233 opls_238 16 ARG N 77 -0.5 15.0147
280 234 opls_241 16 ARG H 77 0.3 0
281 235 opls_224B 16 ARG CA 77 0.14 13.019
282 236 opls_140 16 ARG HA 77 0.06 0
283 237 opls_136 16 ARG CB 78 -0.12 14.027
284 238 opls_140 16 ARG HB1 78 0.06 0
285 239 opls_140 16 ARG HB2 78 0.06 0
286 240 opls_308 16 ARG CG 79 -0.05 14.027
287 241 opls_140 16 ARG HG1 79 0.06 0
288 242 opls_140 16 ARG HG2 79 0.06 0
289 243 opls_307 16 ARG CD 80 0.19 14.027
290 244 opls_140 16 ARG HD1 80 0.06 0
291 245 opls_140 16 ARG HD2 80 0.06 0
292 246 opls_303 16 ARG NE 81 -0.7 15.0147
293 247 opls_304 16 ARG HE 81 0.44 0
294 248 opls_302 16 ARG CZ 81 0.64 12.011
295 249 opls_300 16 ARG NH1 82 -0.8 16.0227
296 250 opls_301 16 ARG HH11 82 0.46 0
297 251 opls_301 16 ARG HH12 82 0.46 0
298 252 opls_300 16 ARG NH2 83 -0.8 16.0227
299 253 opls_301 16 ARG HH21 83 0.46 0
300 254 opls_301 16 ARG HH22 83 0.46 0
301 255 opls_235 16 ARG C 84 0.5 12.011
302 256 opls_236 16 ARG O 84 -0.5 15.9994 ; qtot 1
303 ; residue 17 SER rtp SER q -1.0
304 257 opls_238 17 SER N 85 -0.5 15.0147
305 258 opls_241 17 SER H 85 0.3 0
306 259 opls_283 17 SER CA 85 0.04 13.019
307 260 opls_140 17 SER HA 85 0.06 0
308 261 opls_157 17 SER CB 86 0.145 14.027
309 262 opls_140 17 SER HB1 86 0.06 0
310 263 opls_140 17 SER HB2 86 0.06 0
311 264 opls_154 17 SER OG 87 -0.683 15.9994
312 265 opls_155 17 SER HG 87 0.418 1.008
313 266 opls_271 17 SER C 88 0.7 12.011
314 267 opls_272 17 SER O1 88 -0.8 15.9994
315 268 opls_272 17 SER O2 88 -0.8 15.9994 ; qtot 0
318 ; ai aj funct c0 c1 c2 c3
604 ; ai aj funct c0 c1 c2 c3
1257 ; ai aj ak funct c0 c1 c2 c3
1717 ; ai aj ak al funct c0 c1 c2 c3 c4 c5
1752 17 19 21 24 3 dih_CYS_chi1_N_C_C_S
1753 26 19 21 24 3 dih_CYS_chi1_CO_C_C_S
1780 28 30 32 35 3 dih_ASP_chi1_N_C_C_C
1781 38 30 32 35 3 dih_ASP_chi1_C_C_C_CO
1811 40 42 44 47 3 dih_GLU_chi1_N_C_C_C
1812 53 42 44 47 3 dih_GLU_chi1_C_C_C_CO
1922 82 84 86 89 3 dih_HIS_chi1_N_C_C_C
1923 97 84 86 89 3 dih_HIS_chi1_C_C_C_CO
1937 84 86 89 90 3 dih_HIS_chi2_C_C_C_N
1969 99 101 103 105 3 dih_ILE_chi1_N_C_C_C
1970 99 101 103 110 3 dih_ILE_chi1_N_C_C_C
1971 120 101 103 105 3 dih_ILE_chi1_C_C_C_CO
1972 120 101 103 110 3 dih_ILE_chi1_C_C_C_CO
2021 122 124 126 129 3 dih_LYS_chi1_N_C_C_C
2022 144 124 126 129 3 dih_LYS_chi1_C_C_C_CO
2063 132 135 140 141 3 dih_LYS_chi5_C_C_N_H
2064 132 135 140 142 3 dih_LYS_chi5_C_C_N_H
2065 132 135 140 143 3 dih_LYS_chi5_C_C_N_H
2082 146 148 150 153 3 dih_LEU_chi1_N_C_C_C
2083 167 148 150 153 3 dih_LEU_chi1_C_C_C_CO
2134 169 171 173 176 3 dih_MET_chi1_N_C_C_C
2135 186 171 173 176 3 dih_MET_chi1_C_C_C_CO
2174 188 190 192 195 3 dih_ASN_chi1_N_C_C_C
2175 200 190 192 195 3 dih_ASN_chi1_C_C_C_CO
2189 190 192 195 197 3 dih_ASN_chi2_C_C_CO_N
2258 216 218 220 223 3 dih_GLN_chi1_N_C_C_C
2259 231 218 220 223 3 dih_GLN_chi1_C_C_C_CO
2282 220 223 226 228 3 dih_GLN_chi3_C_C_CO_N
2302 233 235 237 240 3 dih_ARG_chi1_N_C_C_C
2303 255 235 237 240 3 dih_ARG_chi1_C_C_C_CO
2363 257 259 261 264 3 dih_SER_THR_chi1_N_C_C_O
2364 266 259 261 264 3 dih_SER_THR_chi1_CO_C_C_O
2378 259 261 264 265 3 dih_SER_THR_chi2_C_C_OH_HO
2383 ; ai aj ak al funct c0 c1 c2 c3
2384 7 17 15 16 1 improper_O_C_X_Y
2385 15 19 17 18 1 improper_Z_N_X_Y
2386 19 28 26 27 1 improper_O_C_X_Y
2387 26 30 28 29 1 improper_Z_N_X_Y
2388 30 40 38 39 1 improper_O_C_X_Y
2389 32 36 35 37 1 improper_O_C_X_Y
2390 38 42 40 41 1 improper_Z_N_X_Y
2391 42 55 53 54 1 improper_O_C_X_Y
2392 47 51 50 52 1 improper_O_C_X_Y
2393 53 57 55 56 1 improper_Z_N_X_Y
2394 57 75 73 74 1 improper_O_C_X_Y
2395 59 62 65 63 1 improper_Z_CA_X_Y
2396 62 67 63 64 1 improper_Z_CA_X_Y
2397 62 69 65 66 1 improper_Z_CA_X_Y
2398 63 71 67 68 1 improper_Z_CA_X_Y
2399 65 71 69 70 1 improper_Z_CA_X_Y
2400 67 69 71 72 1 improper_Z_CA_X_Y
2401 73 77 75 76 1 improper_Z_N_X_Y
2402 77 82 80 81 1 improper_O_C_X_Y
2403 80 84 82 83 1 improper_Z_N_X_Y
2404 84 99 97 98 1 improper_O_C_X_Y
2405 86 89 91 90 1 improper_Z_CA_X_Y
2406 89 95 91 92 1 improper_Z_CA_X_Y
2407 90 95 93 94 1 improper_Z_CA_X_Y
2408 93 91 95 96 1 improper_Z_N_X_Y
2409 97 101 99 100 1 improper_Z_N_X_Y
2410 101 122 120 121 1 improper_O_C_X_Y
2411 120 124 122 123 1 improper_Z_N_X_Y
2412 124 146 144 145 1 improper_O_C_X_Y
2413 144 148 146 147 1 improper_Z_N_X_Y
2414 148 169 167 168 1 improper_O_C_X_Y
2415 167 171 169 170 1 improper_Z_N_X_Y
2416 171 188 186 187 1 improper_O_C_X_Y
2417 186 190 188 189 1 improper_Z_N_X_Y
2418 190 202 200 201 1 improper_O_C_X_Y
2419 192 197 195 196 1 improper_O_C_X_Y
2420 195 198 197 199 1 improper_Z_N_X_Y
2421 200 203 202 211 1 improper_Z_N_X_Y
2422 203 216 214 215 1 improper_O_C_X_Y
2423 214 218 216 217 1 improper_Z_N_X_Y
2424 218 233 231 232 1 improper_O_C_X_Y
2425 223 228 226 227 1 improper_O_C_X_Y
2426 226 229 228 230 1 improper_Z_N_X_Y
2427 231 235 233 234 1 improper_Z_N_X_Y
2428 235 257 255 256 1 improper_O_C_X_Y
2429 243 248 246 247 1 improper_Z_N_X_Y
2430 246 249 248 252 1 improper_O_C_X_Y
2431 248 250 249 251 1 improper_Z_N_X_Y
2432 248 253 252 254 1 improper_Z_N_X_Y
2433 255 259 257 258 1 improper_Z_N_X_Y
2434 259 267 266 268 1 improper_O_C_X_Y
2437 ; ai aj ak al funct c0 c1
2456 ; ai aj ak al funct c0 c1
2482 ; ai aj ak al funct c0 c1
2493 ; ai aj ak al funct c0 c1 c2
2562 ; ai aj ak al am funct c0 c1 c2
2569 102 101 99 103 120 2
2570 104 103 105 101 110 2
2571 125 124 122 126 144 2
2572 149 148 146 150 167 2
2573 154 153 150 157 163 2
2574 172 171 169 173 186 2
2575 191 190 188 192 200 2
2576 204 203 202 205 214 2
2577 219 218 216 220 231 2
2578 236 235 233 237 255 2
2579 260 259 257 261 266 2
2581 ; Include Position restraint file
2583 #include "posre.itp"
2586 ; Include water topology
2587 #include "oplsaa.ff/tip4p.itp"
2590 ; Position restraint for each water oxygen
2591 [ position_restraints ]
2592 ; i funct fcx fcy fcz
2596 ; Include topology for ions
2597 #include "oplsaa.ff/ions.itp"
2601 Protein (first fragment of regressiontests/complex/aminoacids.gro)