src/external/tng_io/include/compression/bwt.h

   1 /* This code is part of the tng compression routines.
   2  *
   3  * Written by Daniel Spangberg
   4  * Copyright (c) 2010, 2013, The GROMACS development team.
   5  *
   6  *
   7  * This program is free software; you can redistribute it and/or
   8  * modify it under the terms of the Revised BSD License.
   9  */
  10
  11
  12 #ifndef BWT_H
  13 #define BWT_H
  14
  15 void Ptngc_comp_to_bwt(unsigned int *vals, const int nvals,
  16                  unsigned int *output, int *index);
  17
  18 void Ptngc_comp_from_bwt(unsigned int *input, const int nvals, int index,
  19                    unsigned int *vals);
  20
  21 void Ptngc_bwt_merge_sort_inner(int *indices, const int nvals, unsigned int *vals,
  22                                 const int start, const int end,
  23                                 unsigned int *nrepeat,
  24                                 int *workarray);
  25
  26 #endif