Update instructions in containers.rst
[gromacs.git] / src / gromacs / utility / gmxomp.cpp
blob1acd0f7d2a65f78a7dbdf1fab036c5b563c00989
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2016,2017 by the GROMACS development team.
5 * Copyright (c) 2018,2019,2020, by the GROMACS development team, led by
6 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
7 * and including many others, as listed in the AUTHORS file in the
8 * top-level source directory and at http://www.gromacs.org.
10 * GROMACS is free software; you can redistribute it and/or
11 * modify it under the terms of the GNU Lesser General Public License
12 * as published by the Free Software Foundation; either version 2.1
13 * of the License, or (at your option) any later version.
15 * GROMACS is distributed in the hope that it will be useful,
16 * but WITHOUT ANY WARRANTY; without even the implied warranty of
17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
18 * Lesser General Public License for more details.
20 * You should have received a copy of the GNU Lesser General Public
21 * License along with GROMACS; if not, see
22 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
23 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
25 * If you want to redistribute modifications to GROMACS, please
26 * consider that scientific software is very special. Version
27 * control is crucial - bugs must be traceable. We will be happy to
28 * consider code for inclusion in the official distribution, but
29 * derived work must not be called official GROMACS. Details are found
30 * in the README & COPYING files - if they are missing, get the
31 * official version at http://www.gromacs.org.
33 * To help us fund GROMACS development, we humbly ask that you cite
34 * the research papers on the package. Check out http://www.gromacs.org.
36 /*! \internal \file
37 * \brief
38 * Implements functions from gmxomp.h.
40 * \ingroup module_utility
42 #include "gmxpre.h"
44 #include "gmxomp.h"
46 #include "config.h"
48 #include <cstdio>
49 #include <cstdlib>
51 #if GMX_OPENMP
52 # include <omp.h>
53 #endif
55 #include "gromacs/utility/basedefinitions.h"
56 #include "gromacs/utility/cstringutil.h"
57 #include "gromacs/utility/exceptions.h"
58 #include "gromacs/utility/fatalerror.h"
59 #include "gromacs/utility/programcontext.h"
60 #include "gromacs/utility/stringutil.h"
62 int gmx_omp_get_max_threads()
64 #if GMX_OPENMP
65 return omp_get_max_threads();
66 #else
67 return 1;
68 #endif
71 int gmx_omp_get_num_procs()
73 #if GMX_OPENMP
74 return omp_get_num_procs();
75 #else
76 return 1;
77 #endif
80 int gmx_omp_get_thread_num()
82 #if GMX_OPENMP
83 return omp_get_thread_num();
84 #else
85 return 0;
86 #endif
89 void gmx_omp_set_num_threads(int num_threads)
91 #if GMX_OPENMP
92 omp_set_num_threads(num_threads);
93 #else
94 GMX_UNUSED_VALUE(num_threads);
95 #endif
98 gmx_bool gmx_omp_check_thread_affinity(char** message)
100 bool shouldSetAffinity = true;
102 *message = nullptr;
103 #if GMX_OPENMP
104 /* We assume that the affinity setting is available on all platforms
105 * gcc supports. Even if this is not the case (e.g. Mac OS) the user
106 * will only get a warning. */
107 # if defined(__GNUC__) || defined(__INTEL_COMPILER)
108 const char* programName;
111 programName = gmx::getProgramContext().displayName();
113 GMX_CATCH_ALL_AND_EXIT_WITH_FATAL_ERROR
115 const char* const gomp_env = getenv("GOMP_CPU_AFFINITY");
116 const bool bGompCpuAffinitySet = (gomp_env != nullptr);
118 /* turn off internal pinning if GOMP_CPU_AFFINITY is set & non-empty */
119 if (bGompCpuAffinitySet && *gomp_env != '\0')
123 std::string buf = gmx::formatString(
124 "NOTE: GOMP_CPU_AFFINITY set, will turn off %s internal affinity\n"
125 " setting as the two can conflict and cause performance degradation.\n"
126 " To keep using the %s internal affinity setting, unset the\n"
127 " GOMP_CPU_AFFINITY environment variable.",
128 programName, programName);
129 *message = gmx_strdup(buf.c_str());
131 GMX_CATCH_ALL_AND_EXIT_WITH_FATAL_ERROR
132 shouldSetAffinity = false;
134 # endif /* __GNUC__ || __INTEL_COMPILER */
136 # if defined(__INTEL_COMPILER)
137 const char* const kmp_env = getenv("KMP_AFFINITY");
138 const bool bKmpAffinitySet = (kmp_env != NULL);
140 // turn off internal pinning if KMP_AFFINITY is set but does not contain
141 // the settings 'disabled' or 'none'.
142 if (bKmpAffinitySet && (strstr(kmp_env, "disabled") == NULL) && (strstr(kmp_env, "none") == NULL))
146 std::string buf = gmx::formatString(
147 "NOTE: KMP_AFFINITY set, will turn off %s internal affinity\n"
148 " setting as the two can conflict and cause performance degradation.\n"
149 " To keep using the %s internal affinity setting, unset the\n"
150 " KMP_AFFINITY environment variable or set it to 'none' or 'disabled'.",
151 programName, programName);
152 *message = gmx_strdup(buf.c_str());
154 GMX_CATCH_ALL_AND_EXIT_WITH_FATAL_ERROR;
155 shouldSetAffinity = false;
157 # endif /* __INTEL_COMPILER */
159 #endif /* GMX_OPENMP */
160 return shouldSetAffinity;