.gitlab-ci.yml

   1 include:
   2     - local: '/admin/ci-templates/.include-template.yml'
   3
   4 .configure-extends-template:
   5     extends:
   6         - .configure-build-template
   7         - .no-cache-template
   8         - .variables-template
   9         - .tags-template
  10
  11 .configure-release-extends-template:
  12     extends:
  13         - .configure-build-release-template
  14         - .no-cache-template
  15         - .variables-template
  16         - .tags-template
  17
  18 .build-extends-template:
  19     extends:
  20         - .binary-build-template
  21         - .build-cache-template
  22         - .variables-template
  23         - .tags-template
  24
  25 .test-extends-template:
  26     extends:
  27         - .test-base-template
  28         - .pull-cache-template
  29         - .test-script-template
  30         - .variables-template
  31         - .tags-template
  32
  33 .regressiontests-extends-template:
  34     extends:
  35         - .no-cache-template
  36         - .variables-template
  37         - .tags-template
  38
  39 # CI is organized into stages so that if early stages fail
  40 # the later ones are not run.
  41 stages:
  42   # Initial test build for checking simple compilation and getting regressiontest repo
  43   - pre-build
  44   # Configuration for building and testing
  45   - configure-build
  46   # Build GROMACS in multiple configurations
  47   - build
  48   # Test each configuration, perhaps in multiple ways
  49   - test
  50   # Generate documentation files
  51   - documentation
  52   # Check documentation from source code for errors
  53   - source-check
  54   # Linting, docs, static analysis, coverage, code analysis...
  55   - post-test
  56   # Nightly work to configure builds
  57   - nightly-configure
  58   # Nightly build stage
  59   - nightly-build
  60   # Nightly deploy stage
  61   - nightly-deploy
  62   # Release work for packaging code
  63   - release-package
  64   # Release checksum verification
  65   - release-verify
  66   # Configure code for release builds
  67   - release-configure
  68   # Release work for packaging code
  69   - release-build
  70   # Tests for release code
  71   - release-tests
  72   # Prepare for deploying artifacts
  73   - release-prepare-deploy
  74   # Deploy stage for release builds
  75   - release-deploy
  76
  77 # Templates for configuration stage
  78 .configure-gcc:
  79     extends:
  80       - .configure-extends-template
  81       - .gcc-before-script-template
  82       - .build-gcc-template
  83
  84 .configure-gcc-release:
  85     extends:
  86       - .configure-release-extends-template
  87       - .gcc-before-script-template
  88       - .build-gcc-template
  89
  90 .configure-clang:
  91     extends:
  92       - .configure-extends-template
  93       - .clang-before-script-template
  94       - .build-clang-template
  95
  96 .configure-clang-release:
  97     extends:
  98       - .configure-release-extends-template
  99       - .clang-before-script-template
 100       - .build-clang-template
 101
 102 .configure-docs:
 103     extends:
 104       - .configure-extends-template
 105       - .configure-docs-template
 106       - .documentation-before-script-template
 107
 108 .configure-docs-release:
 109     extends:
 110       - .configure-extends-template
 111       - .configure-docs-release-template
 112       - .documentation-before-script-template
 113
 114 # Templates for build stage
 115 .build-archive:
 116     extends:
 117       - .build-extends-template
 118       - .documentation-before-script-template
 119       - .build-docs-binary-template
 120       - .archive-build-template
 121
 122 .build-gcc:
 123     extends:
 124       - .build-extends-template
 125       - .gcc-before-script-template
 126       - .build-gcc-template
 127
 128 .build-clang:
 129     extends:
 130       - .build-extends-template
 131       - .clang-before-script-template
 132       - .build-clang-template
 133
 134 .build-docs-binary:
 135     extends:
 136       - .build-extends-template
 137       - .build-cache-template
 138       - .build-docs-binary-template
 139       - .documentation-before-script-template
 140
 141 .build-docs-webpage:
 142     extends:
 143       - .binary-build-template
 144       - .variables-template
 145       - .tags-template
 146       - .no-cache-template
 147       - .build-docs-webpage-template
 148       - .documentation-before-script-template
 149
 150 .build-cuda-gcc:
 151     extends:
 152       - .build-gcc
 153       - .build-cuda-template
 154
 155 # Templates for test stage
 156 .test-gcc:
 157     extends:
 158       - .test-extends-template
 159       - .gcc-before-script-template
 160       - .test-gcc-template
 161
 162 .test-clang:
 163     extends:
 164       - .test-extends-template
 165       - .clang-before-script-template
 166       - .test-clang-template
 167
 168 # Special job to package regressiontest files and have them available for testing
 169 # Runs during pre-build
 170 prepare-regressiontests:
 171     extends:
 172       - .regressiontests-extends-template
 173       - .regressiontests-template
 174
 175 prepare-release-version:
 176     extends:
 177       - .regressiontests-extends-template
 178       - .release-version-template
 179
 180 # Initial build that always needs to pass before follow-up stages run
 181 simple-build:
 182     extends:
 183       - .simple-build-template
 184       - .build-cache-template
 185       - .variables-template
 186       - .tags-template
 187       - .gcc-before-script-template
 188       - .build-gcc-template
 189       - .gcc7-template
 190     variables:
 191         COMPILER_MAJOR_VERSION: 7
 192         BUILD_DIR: simple-build
 193     except:
 194       variables:
 195         - $GROMACS_RELEASE
 196
 197 # Jobs running in first pre-build stage
 198 configure-gcc-7:
 199     extends:
 200       - .configure-gcc
 201       - .gcc7-template
 202     needs:
 203       - job: simple-build
 204         artifacts: false
 205     variables:
 206         COMPILER_MAJOR_VERSION: 7
 207     except:
 208       variables:
 209         - $GROMACS_RELEASE
 210
 211 configure-gcc-7-gmxapi:
 212     extends:
 213       - .configure-gcc
 214       - .configure-gmxapi-template
 215       - .gcc7-template
 216     needs:
 217       - job: simple-build
 218         artifacts: false
 219     variables:
 220         COMPILER_MAJOR_VERSION: 7
 221     except:
 222       variables:
 223         - $GROMACS_RELEASE
 224
 225 configure-gcc-7-double:
 226     extends:
 227       - .configure-gcc
 228       - .gcc7-template
 229     needs:
 230       - job: simple-build
 231         artifacts: false
 232     variables:
 233         COMPILER_MAJOR_VERSION: 7
 234         CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
 235     except:
 236       variables:
 237         - $GROMACS_RELEASE
 238
 239 configure-gcc-8:
 240     extends:
 241       - .configure-gcc
 242       - .gcc8-template
 243     needs:
 244       - job: simple-build
 245         artifacts: false
 246     variables:
 247         COMPILER_MAJOR_VERSION: 8
 248     except:
 249       variables:
 250         - $GROMACS_RELEASE
 251
 252 configure-gcc-7-simd-sse41:
 253     extends:
 254       - .configure-gcc
 255       - .gcc7-template
 256     needs:
 257       - job: simple-build
 258         artifacts: false
 259     variables:
 260         COMPILER_MAJOR_VERSION: 7
 261         CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=SSE4.1"
 262     except:
 263       variables:
 264         - $GROMACS_RELEASE
 265
 266 configure-clang-7:
 267     extends:
 268       - .configure-clang
 269       - .clang7-template
 270     needs:
 271       - job: simple-build
 272         artifacts: false
 273     variables:
 274         COMPILER_MAJOR_VERSION: 7
 275     except:
 276       variables:
 277         - $GROMACS_RELEASE
 278
 279 configure-clang-7-gmxapi:
 280     extends:
 281       - .configure-clang
 282       - .configure-gmxapi-template
 283       - .clang7-template
 284     needs:
 285       - job: simple-build
 286         artifacts: false
 287     variables:
 288         COMPILER_MAJOR_VERSION: 7
 289     except:
 290       variables:
 291         - $GROMACS_RELEASE
 292
 293 configure-clang-8:
 294     extends:
 295       - .configure-clang
 296       - .clang8-template
 297     needs:
 298       - job: simple-build
 299         artifacts: false
 300     variables:
 301         COMPILER_MAJOR_VERSION: 8
 302     except:
 303       variables:
 304         - $GROMACS_RELEASE
 305
 306 # For version of clang before 7, we need to always provide the full version
 307 # Use something like this instead in the download script:
 308 # APT_COMPILER_VERSION=$(($COMPILER_MAJOR_VERSION < 7 ? "${COMPILER_MAJOR_VERSION}.0" : $COMPILER_MAJOR_VERSION))
 309 configure-clang-6:
 310     extends:
 311       - .configure-clang
 312       - .clang6-template
 313     needs:
 314       - job: simple-build
 315         artifacts: false
 316     variables:
 317         COMPILER_MAJOR_VERSION: "6.0"
 318         CMAKE_MPI_OPTIONS: -DGMX_OPENMP=OFF
 319     except:
 320       variables:
 321         - $GROMACS_RELEASE
 322
 323 configure-clang-tidy:
 324     extends:
 325       - .configure-clang
 326       - .clang7-template
 327     needs:
 328       - job: simple-build
 329         artifacts: false
 330     variables:
 331         BUILD_DIR: build-clang-tidy
 332         COMPILER_MAJOR_VERSION: 7
 333         CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
 334         EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
 335     except:
 336       variables:
 337         - $GROMACS_RELEASE
 338
 339 configure-docs:
 340     extends:
 341       - .configure-docs
 342     needs:
 343       - job: simple-build
 344         artifacts: false
 345     variables:
 346         BUILD_DIR: build-docs
 347         CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 348     except:
 349       variables:
 350         - $GROMACS_RELEASE
 351
 352 configure-docs-gmxapi:
 353     extends:
 354       - .configure-docs
 355       - .configure-gmxapi-template
 356     needs:
 357       - job: simple-build
 358         artifacts: false
 359     variables:
 360         BUILD_DIR: build-docs-gmxapi
 361         CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 362     except:
 363       variables:
 364         - $GROMACS_RELEASE
 365
 366 # Only running in scheduled pipelines that are not release builds
 367 configure-archive-nightly:
 368     stage: nightly-configure
 369     only:
 370       - triggers
 371       - schedules
 372     needs:
 373       - job: simple-build
 374         artifacts: false
 375     except:
 376       variables:
 377         - $GROMACS_RELEASE
 378     extends:
 379       - .configure-docs
 380     variables:
 381         BUILD_DIR: build-package
 382         CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
 383         CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
 384         CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
 385
 386 configure-archive-release:
 387     only:
 388       refs:
 389         - web
 390         - triggers
 391         - schedules
 392       variables:
 393         - $GROMACS_RELEASE
 394
 395     extends:
 396       - .configure-docs
 397     variables:
 398         BUILD_DIR: build-package
 399         CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
 400         CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
 401         CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF
 402
 403 # Jobs running during build stage
 404 build-gcc-7:
 405     extends:
 406       - .build-gcc
 407       - .gcc7-template
 408     needs:
 409       - job: simple-build
 410         artifacts: false
 411       - job: configure-gcc-7
 412         artifacts: true
 413     except:
 414       variables:
 415         - $GROMACS_RELEASE
 416
 417
 418 build-gcc-7-gmxapi:
 419     extends:
 420       - .build-gcc
 421       - .gmxapi-extra-installs
 422       - .gcc7-template
 423     needs:
 424       - job: simple-build
 425         artifacts: false
 426       - job: configure-gcc-7-gmxapi
 427         artifacts: true
 428     except:
 429       variables:
 430         - $GROMACS_RELEASE
 431
 432 build-gcc-7-double:
 433     extends:
 434       - .build-gcc
 435       - .gcc7-template
 436     needs:
 437       - job: simple-build
 438         artifacts: false
 439       - job: configure-gcc-7-double
 440         artifacts: true
 441     except:
 442       variables:
 443         - $GROMACS_RELEASE
 444
 445 build-gcc-8:
 446     extends:
 447       - .build-gcc
 448       - .gcc8-template
 449     needs:
 450       - job: simple-build
 451         artifacts: false
 452       - job: configure-gcc-8
 453         artifacts: true
 454     except:
 455       variables:
 456         - $GROMACS_RELEASE
 457
 458 build-gcc-7-simd-sse41:
 459     extends:
 460       - .build-gcc
 461       - .gcc7-template
 462     needs:
 463       - job: simple-build
 464         artifacts: false
 465       - job: configure-gcc-7-simd-sse41
 466         artifacts: true
 467     except:
 468       variables:
 469         - $GROMACS_RELEASE
 470
 471 build-clang-7:
 472     extends:
 473       - .build-clang
 474       - .clang7-template
 475     needs:
 476       - job: simple-build
 477         artifacts: false
 478       - job: configure-clang-7
 479         artifacts: true
 480     except:
 481       variables:
 482         - $GROMACS_RELEASE
 483
 484 build-clang-7-gmxapi:
 485     extends:
 486       - .build-clang
 487       - .gmxapi-extra-installs
 488       - .clang7-template
 489     needs:
 490       - job: simple-build
 491         artifacts: false
 492       - job: configure-clang-7-gmxapi
 493         artifacts: true
 494     except:
 495       variables:
 496         - $GROMACS_RELEASE
 497
 498 build-clang-8:
 499     extends:
 500       - .build-clang
 501       - .clang8-template
 502     needs:
 503       - job: simple-build
 504         artifacts: false
 505       - job: configure-clang-8
 506         artifacts: true
 507     except:
 508       variables:
 509         - $GROMACS_RELEASE
 510
 511 build-clang-6:
 512     extends:
 513       - .build-clang
 514       - .clang6-template
 515     needs:
 516       - job: simple-build
 517         artifacts: false
 518       - job: configure-clang-6
 519         artifacts: true
 520     except:
 521       variables:
 522         - $GROMACS_RELEASE
 523
 524 # Jobs running during test stage
 525 test-gcc-7:
 526     extends:
 527       - .test-gcc
 528       - .gcc7-template
 529     needs:
 530       - job: simple-build
 531         artifacts: false
 532       - job: build-gcc-7
 533     except:
 534       variables:
 535         - $GROMACS_RELEASE
 536
 537 test-gcc-7-gmxapi:
 538     extends:
 539       - .test-gcc
 540       - .gmxapi-extra-installs
 541       - .gcc7-template
 542     needs:
 543       - job: simple-build
 544         artifacts: false
 545       - job: build-gcc-7-gmxapi
 546     except:
 547       variables:
 548         - $GROMACS_RELEASE
 549
 550 test-gcc-7-double:
 551     extends:
 552       - .test-gcc
 553       - .gcc7-template
 554     needs:
 555       - job: simple-build
 556         artifacts: false
 557       - job: build-gcc-7-double
 558     except:
 559       variables:
 560         - $GROMACS_RELEASE
 561
 562 test-gcc-8:
 563     extends:
 564       - .test-gcc
 565       - .gcc8-template
 566     needs:
 567       - job: simple-build
 568         artifacts: false
 569       - job: build-gcc-8
 570     except:
 571       variables:
 572         - $GROMACS_RELEASE
 573
 574 test-gcc-7-simd-sse41:
 575     extends:
 576       - .test-gcc
 577       - .gcc7-template
 578     needs:
 579       - job: simple-build
 580         artifacts: false
 581       - job: build-gcc-7-simd-sse41
 582     except:
 583       variables:
 584         - $GROMACS_RELEASE
 585
 586 test-clang-7:
 587     extends:
 588       - .test-clang
 589       - .clang7-template
 590     needs:
 591       - job: simple-build
 592         artifacts: false
 593       - job: build-clang-7
 594     except:
 595       variables:
 596         - $GROMACS_RELEASE
 597
 598 test-clang-7-gmxapi:
 599     extends:
 600       - .test-clang
 601       - .gmxapi-extra-installs
 602       - .clang7-template
 603     needs:
 604       - job: simple-build
 605         artifacts: false
 606       - job: build-clang-7-gmxapi
 607     except:
 608       variables:
 609         - $GROMACS_RELEASE
 610
 611 test-clang-8:
 612     extends:
 613       - .test-clang
 614       - .clang8-template
 615     needs:
 616       - job: simple-build
 617         artifacts: false
 618       - job: build-clang-8
 619     except:
 620       variables:
 621         - $GROMACS_RELEASE
 622
 623 test-clang-6:
 624     extends:
 625       - .test-clang
 626       - .clang6-template
 627     needs:
 628       - job: simple-build
 629         artifacts: false
 630       - job: build-clang-6
 631     except:
 632       variables:
 633         - $GROMACS_RELEASE
 634
 635 # Jobs running in source checking stage
 636 build-clang-tidy:
 637   extends:
 638     - .build-clang
 639     - .clang7-template
 640   stage: source-check
 641   needs:
 642     - job: simple-build
 643       artifacts: false
 644     - job: configure-clang-tidy
 645       artifacts: true
 646   variables:
 647       BUILD_DIR: build-clang-tidy
 648       COMPILER_MAJOR_VERSION: 7
 649       EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
 650   except:
 651     variables:
 652       - $GROMACS_RELEASE
 653
 654 run-clang-format:
 655   extends:
 656     - .binary-build-template
 657     - .no-cache-template
 658     - .variables-template
 659     - .tags-template
 660     - .clang-before-script-template
 661     - .build-clang-template
 662     - .clang7-template
 663   stage: source-check
 664   when: always
 665   needs:
 666     - job: simple-build
 667       artifacts: false
 668   variables:
 669       KUBERNETES_CPU_LIMIT: 1
 670       KUBERNETES_CPU_REQUEST: 1
 671       KUBERNETES_MEMORY_LIMIT: 2Gi
 672       COMPILER_MAJOR_VERSION: 7
 673       EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
 674   except:
 675     variables:
 676       - $GROMACS_RELEASE
 677   script:
 678     - export CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION
 679     - admin/clang-format.sh check --rev=HEAD^ --warnings=clang-format.log
 680     - grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
 681     - if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
 682   artifacts:
 683     when: on_failure
 684     paths:
 685       - clang-format.log
 686       - formatting.txt
 687
 688 run-copyright-check:
 689   extends:
 690     - .binary-build-template
 691     - .no-cache-template
 692     - .variables-template
 693     - .tags-template
 694     - .clang-before-script-template
 695     - .build-clang-template
 696     - .clang7-template
 697
 698   stage: source-check
 699   when: always
 700   needs:
 701     - job: simple-build
 702       artifacts: false
 703   variables:
 704       KUBERNETES_CPU_LIMIT: 1
 705       KUBERNETES_CPU_REQUEST: 1
 706       KUBERNETES_MEMORY_LIMIT: 2Gi
 707   except:
 708     variables:
 709       - $GROMACS_RELEASE
 710   script:
 711     - admin/copyright.sh check --rev=HEAD^ --warnings=copyright.log
 712     - grep -iq "copyright year" copyright.log | tee years.log || true
 713     - grep -iq "copyright header" copyright.log | tee headers.log || true
 714     - if [[ -s years.log || -s headers.log ]] ; then
 715       echo "Copyright information needs updating" ;
 716       exit 1 ;
 717       fi
 718   artifacts:
 719     when: on_failure
 720     paths:
 721       - copyright.log
 722       - years.log
 723       - headers.log
 724
 725 run-check-source:
 726   extends:
 727     - .no-cache-template
 728     - .variables-template
 729     - .tags-template
 730     - .build-docs-binary-template
 731     - .documentation-before-script-template
 732   stage: source-check
 733   needs:
 734     - job: simple-build
 735       artifacts: false
 736     - job: build-docs
 737       artifacts: true
 738   variables:
 739     KUBERNETES_CPU_LIMIT: 1
 740     KUBERNETES_CPU_REQUEST: 1
 741     KUBERNETES_MEMORY_LIMIT: 2Gi
 742     BUILD_DIR: build-docs
 743     COMPILER_MAJOR_VERSION: 7
 744   except:
 745     variables:
 746       - $GROMACS_RELEASE
 747
 748   script:
 749     - cd $BUILD_DIR
 750     - cmake --build . --target check-source
 751     - grep -qi "error" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee doxygenError.txt || true
 752     - grep -qi "warning" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
 753     - if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
 754   artifacts:
 755     name: docs-artifacts-$CI_COMMIT_REF_SLUG
 756     when: always
 757     expire_in: 1 week
 758     paths:
 759       - $BUILD_DIR/docs/doxygen/doxygen-xml.log
 760       - $BUILD_DIR/docs/doxygen/check-source.log
 761
 762 # Jobs running during documentation build stage
 763 build-docs:
 764   extends:
 765     - .build-docs-binary
 766   stage: documentation
 767   needs:
 768     - job: simple-build
 769       artifacts: false
 770     - job: configure-docs
 771       artifacts: true
 772   variables:
 773     BUILD_DIR: build-docs
 774   except:
 775     variables:
 776       - $GROMACS_RELEASE
 777
 778 build-docs-gmxapi:
 779     extends:
 780       - .build-docs-binary
 781       - .gmxapi-extra-installs
 782     stage: documentation
 783     needs:
 784       - job: simple-build
 785         artifacts: false
 786       - job: configure-docs-gmxapi
 787         artifacts: true
 788     variables:
 789         BUILD_DIR: build-docs-gmxapi
 790     except:
 791       variables:
 792         - $GROMACS_RELEASE
 793
 794 # Jobs running in post-test stage
 795
 796 # The manual build is built separately so that errors in converting
 797 # Sphinx to LaTeX and compiling can always be found in the
 798 # all-output.txt file, while avoiding many thousands of lines of spam
 799 # from pdflatex for normal builds. This does reduce the available
 800 # parallel utilization, and so increases the build time.
 801 #
 802 # TODO why are the doxygen and sphinx log files disappearing
 803 # TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
 804 webpage:
 805   extends:
 806     - .build-docs-webpage
 807   stage: post-test
 808   needs:
 809     - job: build-docs
 810       artifacts: true
 811     - job: run-check-source
 812       artifacts: false
 813   variables:
 814     BUILD_DIR: build-docs
 815   except:
 816     variables:
 817       - $GROMACS_RELEASE
 818
 819 webpage-gmxapi:
 820   extends:
 821     - .build-docs-webpage
 822     - .gmxapi-extra-installs
 823   stage: post-test
 824   needs:
 825     - job: build-docs-gmxapi
 826       artifacts: true
 827     - job: run-check-source
 828       artifacts: false
 829   variables:
 830     BUILD_DIR: build-docs-gmxapi
 831   except:
 832     variables:
 833       - $GROMACS_RELEASE
 834
 835
 836 # Jobs running in release stage
 837 linkchecker:
 838   extends:
 839     - .build-docs-webpage
 840   stage: nightly-build
 841   dependencies:
 842     - webpage-gmxapi
 843   only:
 844     - schedules
 845     - triggers
 846     - merge_requests
 847     - external_pull_requests
 848   except:
 849     variables:
 850       - $GROMACS_RELEASE
 851   variables:
 852       KUBERNETES_CPU_LIMIT: 1
 853       KUBERNETES_CPU_REQUEST: 1
 854       KUBERNETES_MEMORY_LIMIT: 2Gi
 855       BUILD_DIR: build-docs-gmxapi
 856   script:
 857       - cd $BUILD_DIR
 858       - linkchecker docs/html/index.html -f ../docs/linkcheckerrc -Fxml --ignore-url html-full
 859         --ignore-url html-user --ignore-url html-lib --ignore-url .tar.gz --ignore-url _sources
 860         -o xml
 861   artifacts:
 862     reports:
 863       junit: $BUILD_DIR/linkchecker-out.xml
 864
 865 build-archive-nightly:
 866     extends:
 867       - .build-archive
 868     stage: nightly-build
 869     needs:
 870       - job: simple-build
 871         artifacts: false
 872       - job: configure-archive-nightly
 873         artifacts: true
 874     only:
 875       - triggers
 876       - schedules
 877     except:
 878       variables:
 879         - $GROMACS_RELEASE
 880     variables:
 881         BUILD_DIR: build-package
 882
 883 webpage-nightly:
 884     extends:
 885       - .build-docs-webpage
 886       - .configure-gmxapi-template
 887     stage: nightly-deploy
 888     only:
 889       - triggers
 890       - schedules
 891     except:
 892       variables:
 893         - $GROMACS_RELEASE
 894     needs:
 895       - job: simple-build
 896         artifacts: false
 897       - job: linkchecker
 898         artifacts: false
 899       - job: webpage-gmxapi
 900         artifacts: true
 901     variables:
 902         BUILD_DIR: build-docs-gmxapi
 903     script:
 904         - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
 905     artifacts:
 906       when: always
 907       paths:
 908         - webpage.tar.gz
 909
 910 package-regressiontests-release:
 911     extends:
 912       - .regressiontests-extends-template
 913       - .regressiontests-release-template
 914     needs:
 915       - job: prepare-release-version
 916         artifacts: true
 917
 918     only:
 919       refs:
 920         - triggers
 921         - web
 922         - schedules
 923       variables:
 924         - $GROMACS_RELEASE
 925
 926
 927 package-archive-release:
 928     extends:
 929       - .build-archive
 930     stage: release-package
 931     needs:
 932       - job: configure-archive-release
 933         artifacts: true
 934     only:
 935       refs:
 936         - triggers
 937         - web
 938         - schedules
 939       variables:
 940         - $GROMACS_RELEASE
 941     variables:
 942         BUILD_DIR: build-package
 943
 944 release-verify:
 945     extends:
 946       - .regressiontests-extends-template
 947       - .release-verify-template
 948
 949     only:
 950       refs:
 951         - triggers
 952         - web
 953         - schedules
 954       variables:
 955         - $GROMACS_RELEASE
 956     dependencies:
 957       - package-archive-release
 958       - package-regressiontests-release
 959       - prepare-release-version
 960
 961 webpage-configure-release:
 962     extends:
 963       - .configure-docs-release
 964       - .configure-gmxapi-template
 965       - .no-cache-template
 966     only:
 967       refs:
 968         - web
 969         - schedules
 970         - triggers
 971       variables:
 972         - $GROMACS_RELEASE
 973     dependencies:
 974       - package-archive-release
 975       - package-regressiontests-release
 976       - prepare-release-version
 977     variables:
 978       CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
 979
 980 configure-gcc-7-release:
 981     extends:
 982       - .configure-gcc-release
 983       - .no-cache-template
 984       - .gcc7-template
 985     variables:
 986         COMPILER_MAJOR_VERSION: 7
 987         RELEASE_BUILD_DIR: release-builds-gcc
 988     only:
 989       refs:
 990         - web
 991         - schedules
 992         - triggers
 993       variables:
 994         - $GROMACS_RELEASE
 995     dependencies:
 996       - package-archive-release
 997       - package-regressiontests-release
 998       - prepare-release-version
 999
1000 configure-gcc-7-gmxapi-release:
1001     extends:
1002       - .configure-gcc-release
1003       - .configure-gmxapi-template
1004       - .no-cache-template
1005       - .gcc7-template
1006     variables:
1007         COMPILER_MAJOR_VERSION: 7
1008         RELEASE_BUILD_DIR: release-builds-gcc
1009     only:
1010       refs:
1011         - web
1012         - schedules
1013         - triggers
1014       variables:
1015         - $GROMACS_RELEASE
1016     dependencies:
1017       - package-archive-release
1018       - package-regressiontests-release
1019       - prepare-release-version
1020
1021 configure-gcc-7-double-release:
1022     extends:
1023       - .configure-gcc-release
1024       - .no-cache-template
1025       - .gcc7-template
1026     variables:
1027         COMPILER_MAJOR_VERSION: 7
1028         CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
1029         RELEASE_BUILD_DIR: release-builds-gcc
1030     only:
1031       refs:
1032         - web
1033         - schedules
1034         - triggers
1035       variables:
1036         - $GROMACS_RELEASE
1037     dependencies:
1038       - package-archive-release
1039       - package-regressiontests-release
1040       - prepare-release-version
1041
1042 configure-gcc-8-release:
1043     extends:
1044       - .configure-gcc-release
1045       - .no-cache-template
1046       - .gcc8-template
1047     variables:
1048         COMPILER_MAJOR_VERSION: 8
1049         RELEASE_BUILD_DIR: release-builds-gcc
1050     only:
1051       refs:
1052         - web
1053         - schedules
1054         - triggers
1055       variables:
1056         - $GROMACS_RELEASE
1057     dependencies:
1058       - package-archive-release
1059       - package-regressiontests-release
1060       - prepare-release-version
1061
1062 configure-clang-7-release:
1063     extends:
1064       - .configure-clang-release
1065       - .no-cache-template
1066       - .clang7-template
1067     variables:
1068         COMPILER_MAJOR_VERSION: 7
1069         RELEASE_BUILD_DIR: release-builds-clang
1070     only:
1071       refs:
1072         - web
1073         - schedules
1074         - triggers
1075       variables:
1076         - $GROMACS_RELEASE
1077     dependencies:
1078       - package-archive-release
1079       - package-regressiontests-release
1080       - prepare-release-version
1081
1082 configure-clang-7-gmxapi-release:
1083     extends:
1084       - .configure-clang-release
1085       - .configure-gmxapi-template
1086       - .no-cache-template
1087       - .clang7-template
1088     variables:
1089         COMPILER_MAJOR_VERSION: 7
1090         RELEASE_BUILD_DIR: release-builds-clang
1091     only:
1092       refs:
1093         - web
1094         - schedules
1095         - triggers
1096       variables:
1097         - $GROMACS_RELEASE
1098     dependencies:
1099       - package-archive-release
1100       - package-regressiontests-release
1101       - prepare-release-version
1102
1103 configure-clang-8-release:
1104     extends:
1105       - .configure-clang-release
1106       - .no-cache-template
1107       - .clang8-template
1108     variables:
1109         COMPILER_MAJOR_VERSION: 8
1110         RELEASE_BUILD_DIR: release-builds-clang
1111     only:
1112       refs:
1113         - web
1114         - schedules
1115         - triggers
1116       variables:
1117         - $GROMACS_RELEASE
1118     dependencies:
1119       - package-archive-release
1120       - package-regressiontests-release
1121       - prepare-release-version
1122
1123 build-gcc-7-release:
1124     extends:
1125       - .build-gcc
1126       - .gcc7-template
1127     stage: release-build
1128     variables:
1129         BUILD_DIR: release-builds-gcc
1130     needs:
1131       - job: configure-gcc-7-release
1132         artifacts: true
1133     only:
1134       refs:
1135         - web
1136         - schedules
1137         - triggers
1138       variables:
1139         - $GROMACS_RELEASE
1140
1141 build-gcc-7-gmxapi-release:
1142     extends:
1143       - .build-gcc
1144       - .gmxapi-extra-installs
1145       - .gcc7-template
1146     stage: release-build
1147     variables:
1148         BUILD_DIR: release-builds-gcc
1149     needs:
1150       - job: configure-gcc-7-gmxapi-release
1151         artifacts: true
1152     only:
1153       refs:
1154         - web
1155         - schedules
1156         - triggers
1157       variables:
1158         - $GROMACS_RELEASE
1159
1160 build-gcc-7-double-release:
1161     extends:
1162       - .build-gcc
1163       - .gcc7-template
1164     stage: release-build
1165     variables:
1166         BUILD_DIR: release-builds-gcc
1167     needs:
1168       - job: configure-gcc-7-double-release
1169         artifacts: true
1170     only:
1171       refs:
1172         - web
1173         - schedules
1174         - triggers
1175       variables:
1176         - $GROMACS_RELEASE
1177
1178 build-gcc-8-release:
1179     extends:
1180       - .build-gcc
1181       - .gcc8-template
1182     stage: release-build
1183     variables:
1184         BUILD_DIR: release-builds-gcc
1185     needs:
1186       - job: configure-gcc-8-release
1187         artifacts: true
1188     only:
1189       refs:
1190         - web
1191         - schedules
1192         - triggers
1193       variables:
1194         - $GROMACS_RELEASE
1195
1196 build-clang-7-release:
1197     extends:
1198       - .build-clang
1199       - .clang7-template
1200     stage: release-build
1201     variables:
1202         BUILD_DIR: release-builds-clang
1203     needs:
1204       - job: configure-clang-7-release
1205         artifacts: true
1206     only:
1207       refs:
1208         - web
1209         - schedules
1210         - triggers
1211       variables:
1212         - $GROMACS_RELEASE
1213
1214 build-clang-7-gmxapi-release:
1215     extends:
1216       - .build-clang
1217       - .gmxapi-extra-installs
1218       - .clang7-template
1219     stage: release-build
1220     variables:
1221         BUILD_DIR: release-builds-clang
1222     needs:
1223       - job: configure-clang-7-gmxapi-release
1224         artifacts: true
1225     only:
1226       refs:
1227         - web
1228         - schedules
1229         - triggers
1230       variables:
1231         - $GROMACS_RELEASE
1232
1233 build-clang-8-release:
1234     extends:
1235       - .build-clang
1236       - .clang8-template
1237     stage: release-build
1238     variables:
1239         BUILD_DIR: release-builds-clang
1240     needs:
1241       - job: configure-clang-8-release
1242         artifacts: true
1243     only:
1244       refs:
1245         - web
1246         - schedules
1247         - triggers
1248       variables:
1249         - $GROMACS_RELEASE
1250
1251 webpage-binary-release:
1252     extends:
1253       - .build-docs-binary
1254       - .gmxapi-extra-installs
1255     stage: release-build
1256     needs:
1257       - job: webpage-configure-release
1258         artifacts: true
1259     variables:
1260         BUILD_DIR: release-doc-builds
1261     only:
1262       refs:
1263         - triggers
1264         - web
1265         - schedules
1266       variables:
1267         - $GROMACS_RELEASE
1268
1269 test-gcc-7-release:
1270     extends:
1271       - .test-gcc
1272       - .gcc7-template
1273     stage: release-tests
1274     variables:
1275         BUILD_DIR: release-builds-gcc
1276     needs:
1277       - job: configure-gcc-7-release
1278         artifacts: true
1279       - job: build-gcc-7-release
1280         artifacts: true
1281     only:
1282       refs:
1283         - triggers
1284         - web
1285         - schedules
1286       variables:
1287         - $GROMACS_RELEASE
1288
1289 test-gcc-7-gmxapi-release:
1290     extends:
1291       - .test-gcc
1292       - .gmxapi-extra-installs
1293       - .gcc7-template
1294     stage: release-tests
1295     variables:
1296         BUILD_DIR: release-builds-gcc
1297     needs:
1298       - job: configure-gcc-7-gmxapi-release
1299         artifacts: true
1300       - job: build-gcc-7-gmxapi-release
1301         artifacts: true
1302     only:
1303       refs:
1304         - triggers
1305         - web
1306         - schedules
1307       variables:
1308         - $GROMACS_RELEASE
1309
1310 test-gcc-7-double-release:
1311     extends:
1312       - .test-gcc
1313       - .gcc7-template
1314     stage: release-tests
1315     variables:
1316         BUILD_DIR: release-builds-gcc
1317     needs:
1318       - job: configure-gcc-7-double-release
1319         artifacts: true
1320       - job: build-gcc-7-double-release
1321         artifacts: true
1322     only:
1323       refs:
1324         - triggers
1325         - web
1326         - schedules
1327       variables:
1328         - $GROMACS_RELEASE
1329
1330 test-gcc-8-release:
1331     extends:
1332       - .test-gcc
1333       - .gcc8-template
1334     stage: release-tests
1335     variables:
1336         BUILD_DIR: release-builds-gcc
1337     needs:
1338       - job: configure-gcc-8-release
1339         artifacts: true
1340       - job: build-gcc-8-release
1341         artifacts: true
1342     only:
1343       refs:
1344         - triggers
1345         - web
1346         - schedules
1347       variables:
1348         - $GROMACS_RELEASE
1349
1350 test-clang-7-release:
1351     extends:
1352       - .test-clang
1353       - .clang7-template
1354     stage: release-tests
1355     variables:
1356         BUILD_DIR: release-builds-clang
1357     needs:
1358       - job: configure-clang-7-release
1359         artifacts: true
1360       - job: build-clang-7-release
1361         artifacts: true
1362     only:
1363       refs:
1364         - triggers
1365         - web
1366         - schedules
1367       variables:
1368         - $GROMACS_RELEASE
1369
1370 test-clang-7-gmxapi-release:
1371     extends:
1372       - .test-clang
1373       - .gmxapi-extra-installs
1374       - .clang7-template
1375     stage: release-tests
1376     variables:
1377         BUILD_DIR: release-builds-clang
1378     needs:
1379       - job: configure-clang-7-gmxapi-release
1380         artifacts: true
1381       - job: build-clang-7-gmxapi-release
1382         artifacts: true
1383     only:
1384       refs:
1385         - triggers
1386         - web
1387         - schedules
1388       variables:
1389         - $GROMACS_RELEASE
1390
1391 test-clang-8-release:
1392     extends:
1393       - .test-clang
1394       - .clang8-template
1395     stage: release-tests
1396     variables:
1397         BUILD_DIR: release-builds-clang
1398     needs:
1399       - job: configure-clang-8-release
1400         artifacts: true
1401       - job: build-clang-8-release
1402         artifacts: true
1403     only:
1404       refs:
1405         - triggers
1406         - web
1407         - schedules
1408       variables:
1409         - $GROMACS_RELEASE
1410
1411 webpage-build-release:
1412   extends:
1413     - .build-docs-webpage
1414     - .configure-gmxapi-template
1415
1416   dependencies:
1417     - webpage-binary-release
1418     - webpage-configure-release
1419
1420   stage: release-prepare-deploy
1421   only:
1422     refs:
1423       - web
1424       - schedules
1425       - triggers
1426     variables:
1427       - $GROMACS_RELEASE
1428   variables:
1429       BUILD_DIR: release-doc-builds
1430
1431 webpage-archive-release:
1432     extends:
1433       - .build-docs-webpage
1434       - .configure-gmxapi-template
1435     stage: release-deploy
1436     only:
1437       refs:
1438         - web
1439         - triggers
1440         - schedules
1441       variables:
1442         - $GROMACS_RELEASE
1443     dependencies:
1444       - webpage-build-release
1445       - package-archive-release
1446       - package-regressiontests-release
1447     variables:
1448         BUILD_DIR: release-doc-builds
1449     script:
1450         - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
1451     artifacts:
1452       when: always
1453       paths:
1454         - webpage.tar.gz
1455         - gromacs-*tar.gz
1456         - regressiontests-*tar.gz
1457