Separate job script files for gmxapi package versions.
[gromacs.git] / src / gromacs / onlinehelp / helpwritercontext.cpp
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36 /*! \internal \file
37 * \brief
38 * Implements gmx::HelpWriterContext.
40 * \author Teemu Murtola <teemu.murtola@gmail.com>
41 * \ingroup module_onlinehelp
43 #include "gmxpre.h"
45 #include "helpwritercontext.h"
47 #include <cctype>
49 #include <algorithm>
50 #include <memory>
51 #include <string>
52 #include <vector>
54 #include "gromacs/onlinehelp/helpformat.h"
55 #include "gromacs/utility/exceptions.h"
56 #include "gromacs/utility/gmxassert.h"
57 #include "gromacs/utility/programcontext.h"
58 #include "gromacs/utility/stringutil.h"
59 #include "gromacs/utility/textwriter.h"
61 #include "rstparser.h"
63 namespace gmx
66 namespace
69 //! \internal \addtogroup module_onlinehelp
70 //! \{
72 //! Characters used for reStructuredText title underlining.
73 const char g_titleChars[] = "=-^*~+#'_.";
75 struct t_sandr
77 const char* search;
78 const char* replace;
81 /* The order of these arrays is significant. Text search and replace
82 * for each element occurs in order, so earlier changes can induce
83 * subsequent changes even though the original text might not appear
84 * to invoke the latter changes.
85 * TODO: Get rid of this behavior. It makes it very difficult to manage
86 * replacements coming from multiple sources (e.g., hyperlinks).*/
88 //! List of replacements for console output.
89 const t_sandr sandrTty[] = {
90 { "\\*", "*" }, { "\\=", "=" }, { "[REF]", "" }, { "[ref]", "" },
91 { "[TT]", "" }, { "[tt]", "" }, { "[BB]", "" }, { "[bb]", "" },
92 { "[IT]", "" }, { "[it]", "" }, { "[MATH]", "" }, { "[math]", "" },
93 { "[CHEVRON]", "<" }, { "[chevron]", ">" }, { "[MAG]", "|" }, { "[mag]", "|" },
94 { "[INT]", "integral" }, { "[FROM]", " from " }, { "[from]", "" }, { "[TO]", " to " },
95 { "[to]", " of" }, { "[int]", "" }, { "[SUM]", "sum" }, { "[sum]", "" },
96 { "[SUB]", "_" }, { "[sub]", "" }, { "[SQRT]", "sqrt(" }, { "[sqrt]", ")" },
97 { "[EXP]", "exp(" }, { "[exp]", ")" }, { "[LN]", "ln(" }, { "[ln]", ")" },
98 { "[LOG]", "log(" }, { "[log]", ")" }, { "[COS]", "cos(" }, { "[cos]", ")" },
99 { "[SIN]", "sin(" }, { "[sin]", ")" }, { "[TAN]", "tan(" }, { "[tan]", ")" },
100 { "[COSH]", "cosh(" }, { "[cosh]", ")" }, { "[SINH]", "sinh(" }, { "[sinh]", ")" },
101 { "[TANH]", "tanh(" }, { "[tanh]", ")" }, { "[PAR]", "\n\n" }, { "[GRK]", "" },
102 { "[grk]", "" }
105 //! List of replacements for reStructuredText output.
106 const t_sandr sandrRst[] = {
107 { "[TT]", "``" }, { "[tt]", "``" }, { "[BB]", "**" }, { "[bb]", "**" },
108 { "[IT]", "*" }, { "[it]", "*" }, { "[MATH]", "" }, { "[math]", "" },
109 { "[CHEVRON]", "<" }, { "[chevron]", ">" }, { "[MAG]", "\\|" }, { "[mag]", "\\|" },
110 { "[INT]", "integral" }, { "[FROM]", " from " }, { "[from]", "" }, { "[TO]", " to " },
111 { "[to]", " of" }, { "[int]", "" }, { "[SUM]", "sum" }, { "[sum]", "" },
112 { "[SUB]", "_" }, { "[sub]", "" }, { "[SQRT]", "sqrt(" }, { "[sqrt]", ")" },
113 { "[EXP]", "exp(" }, { "[exp]", ")" }, { "[LN]", "ln(" }, { "[ln]", ")" },
114 { "[LOG]", "log(" }, { "[log]", ")" }, { "[COS]", "cos(" }, { "[cos]", ")" },
115 { "[SIN]", "sin(" }, { "[sin]", ")" }, { "[TAN]", "tan(" }, { "[tan]", ")" },
116 { "[COSH]", "cosh(" }, { "[cosh]", ")" }, { "[SINH]", "sinh(" }, { "[sinh]", ")" },
117 { "[TANH]", "tanh(" }, { "[tanh]", ")" }, { "[PAR]", "\n\n" }, { "[GRK]", "" },
118 { "[grk]", "" }
121 /*! \brief
122 * Replaces all entries from a list of replacements.
124 std::string repall(const std::string& s, int nsr, const t_sandr sa[])
126 std::string result(s);
127 for (int i = 0; i < nsr; ++i)
129 result = replaceAll(result, sa[i].search, sa[i].replace);
131 return result;
134 /*! \brief
135 * Replaces all entries from a list of replacements.
137 template<size_t nsr>
138 std::string repall(const std::string& s, const t_sandr (&sa)[nsr])
140 return repall(s, nsr, sa);
143 /*! \brief
144 * Custom output interface for HelpWriterContext::Impl::processMarkup().
146 * Provides an interface that is used to implement different types of output
147 * from HelpWriterContext::Impl::processMarkup().
149 class IWrapper
151 public:
152 virtual ~IWrapper() {}
154 /*! \brief
155 * Provides the wrapping settings.
157 * HelpWriterContext::Impl::processMarkup() may provide some default
158 * values for the settings if they are not set; this is the reason the
159 * return value is not const.
161 virtual TextLineWrapperSettings& settings() = 0;
162 //! Appends the given string to output.
163 virtual void wrap(const std::string& text) = 0;
166 /*! \brief
167 * Wraps markup output into a single string.
169 class WrapperToString : public IWrapper
171 public:
172 //! Creates a wrapper with the given settings.
173 explicit WrapperToString(const TextLineWrapperSettings& settings) : wrapper_(settings) {}
175 TextLineWrapperSettings& settings() override { return wrapper_.settings(); }
176 void wrap(const std::string& text) override { result_.append(wrapper_.wrapToString(text)); }
177 //! Returns the result string.
178 const std::string& result() const { return result_; }
180 private:
181 TextLineWrapper wrapper_;
182 std::string result_;
185 /*! \brief
186 * Wraps markup output into a vector of string (one line per element).
188 class WrapperToVector : public IWrapper
190 public:
191 //! Creates a wrapper with the given settings.
192 explicit WrapperToVector(const TextLineWrapperSettings& settings) : wrapper_(settings) {}
194 TextLineWrapperSettings& settings() override { return wrapper_.settings(); }
195 void wrap(const std::string& text) override
197 const std::vector<std::string>& lines = wrapper_.wrapToVector(text);
198 result_.insert(result_.end(), lines.begin(), lines.end());
200 //! Returns a vector with the output lines.
201 const std::vector<std::string>& result() const { return result_; }
203 private:
204 TextLineWrapper wrapper_;
205 std::vector<std::string> result_;
208 /*! \brief
209 * Makes the string uppercase.
211 * \param[in] text Input text.
212 * \returns \p text with all characters transformed to uppercase.
213 * \throws std::bad_alloc if out of memory.
215 std::string toUpperCase(const std::string& text)
217 std::string result(text);
218 std::transform(result.begin(), result.end(), result.begin(), toupper);
219 return result;
222 /*! \brief
223 * Removes extra newlines from reStructuredText.
225 * \param[in] text Input text.
226 * \returns \p text with all sequences of more than two newlines replaced
227 * with just two newlines.
228 * \throws std::bad_alloc if out of memory.
230 std::string removeExtraNewlinesRst(const std::string& text)
232 // Start from 2, so that all newlines in the beginning get stripped off.
233 int newlineCount = 2;
234 std::string result;
235 result.reserve(text.length());
236 for (size_t i = 0; i < text.length(); ++i)
238 if (text[i] == '\n')
240 ++newlineCount;
241 if (newlineCount > 2)
243 continue;
246 else
248 newlineCount = 0;
250 result.push_back(text[i]);
252 size_t last = result.find_last_not_of('\n');
253 if (last != std::string::npos)
255 result.resize(last + 1);
257 return result;
260 //! \}
262 } // namespace
264 /********************************************************************
265 * HelpLinks::Impl
268 /*! \internal \brief
269 * Private implementation class for HelpLinks.
271 * \ingroup module_onlinehelp
273 class HelpLinks::Impl
275 public:
276 struct LinkItem
278 LinkItem(const std::string& linkName, const std::string& replacement) :
279 linkName(linkName),
280 replacement(replacement)
283 std::string linkName;
284 std::string replacement;
287 //! Shorthand for a list of links.
288 typedef std::vector<LinkItem> LinkList;
290 //! Initializes empty links with the given format.
291 explicit Impl(HelpOutputFormat format) : format_(format) {}
293 //! List of links.
294 LinkList links_;
295 //! Output format for which the links are formatted.
296 HelpOutputFormat format_;
299 /********************************************************************
300 * HelpLinks
303 HelpLinks::HelpLinks(HelpOutputFormat format) : impl_(new Impl(format)) {}
305 HelpLinks::~HelpLinks() {}
307 void HelpLinks::addLink(const std::string& linkName, const std::string& targetName, const std::string& displayName)
309 std::string replacement;
310 switch (impl_->format_)
312 case eHelpOutputFormat_Console: replacement = repall(displayName, sandrTty); break;
313 case eHelpOutputFormat_Rst: replacement = targetName; break;
314 default: GMX_RELEASE_ASSERT(false, "Output format not implemented for links");
316 impl_->links_.emplace_back(linkName, replacement);
319 /********************************************************************
320 * HelpWriterContext::Impl
323 /*! \internal \brief
324 * Private implementation class for HelpWriterContext.
326 * \ingroup module_onlinehelp
328 class HelpWriterContext::Impl
330 public:
331 /*! \brief
332 * Shared, non-modifiable state for context objects.
334 * Contents of this structure are shared between all context objects
335 * that are created from a common parent.
336 * This state should not be modified after construction.
338 * \ingroup module_onlinehelp
340 class SharedState
342 public:
343 //! Initializes the state with the given parameters.
344 SharedState(TextWriter* writer, HelpOutputFormat format, const HelpLinks* links) :
345 file_(*writer),
346 format_(format),
347 links_(links)
351 /*! \brief
352 * Returns a formatter for formatting options lists for console
353 * output.
355 * The formatter is lazily initialized on first access.
357 TextTableFormatter& consoleOptionsFormatter() const
359 GMX_RELEASE_ASSERT(format_ == eHelpOutputFormat_Console,
360 "Accessing console formatter for non-console output");
361 if (!consoleOptionsFormatter_)
363 consoleOptionsFormatter_ = std::make_unique<TextTableFormatter>();
364 consoleOptionsFormatter_->setFirstColumnIndent(1);
365 consoleOptionsFormatter_->addColumn(nullptr, 7, false);
366 consoleOptionsFormatter_->addColumn(nullptr, 18, false);
367 consoleOptionsFormatter_->addColumn(nullptr, 16, false);
368 consoleOptionsFormatter_->addColumn(nullptr, 28, false);
370 return *consoleOptionsFormatter_;
373 //! Writer for writing the help.
374 TextWriter& file_;
375 //! Output format for the help output.
376 HelpOutputFormat format_;
377 //! Links to use.
378 const HelpLinks* links_;
380 private:
381 //! Formatter for console output options.
382 // Never releases ownership.
383 mutable std::unique_ptr<TextTableFormatter> consoleOptionsFormatter_;
385 GMX_DISALLOW_COPY_AND_ASSIGN(SharedState);
388 struct ReplaceItem
390 ReplaceItem(const std::string& search, const std::string& replace) :
391 search(search),
392 replace(replace)
395 std::string search;
396 std::string replace;
399 //! Smart pointer type for managing the shared state.
400 typedef std::shared_ptr<const SharedState> StatePointer;
401 //! Shorthand for a list of markup/other replacements.
402 typedef std::vector<ReplaceItem> ReplaceList;
404 //! Initializes the context with the given state and section depth.
405 Impl(const StatePointer& state, int sectionDepth) : state_(state), sectionDepth_(sectionDepth)
408 //! Copies the context.
409 Impl(const Impl&) = default;
411 //! Adds a new replacement.
412 void addReplacement(const std::string& search, const std::string& replace)
414 replacements_.emplace_back(search, replace);
417 //! Replaces links in a given string.
418 std::string replaceLinks(const std::string& input) const;
420 /*! \brief
421 * Process markup and wrap lines within a block of text.
423 * \param[in] text Text to process.
424 * \param wrapper Object used to wrap the text.
426 * The \p wrapper should take care of either writing the text to output
427 * or providing an interface for the caller to retrieve the output.
429 void processMarkup(const std::string& text, IWrapper* wrapper) const;
431 //! Constant state shared by all child context objects.
432 StatePointer state_;
433 //! List of markup/other replacements.
434 ReplaceList replacements_;
435 //! Number of subsections above this context.
436 int sectionDepth_;
438 private:
439 GMX_DISALLOW_ASSIGN(Impl);
442 std::string HelpWriterContext::Impl::replaceLinks(const std::string& input) const
444 std::string result(input);
445 if (state_->links_ != nullptr)
447 HelpLinks::Impl::LinkList::const_iterator link;
448 for (link = state_->links_->impl_->links_.begin();
449 link != state_->links_->impl_->links_.end(); ++link)
451 result = replaceAllWords(result, link->linkName, link->replacement);
454 return result;
457 void HelpWriterContext::Impl::processMarkup(const std::string& text, IWrapper* wrapper) const
459 std::string result(text);
460 for (ReplaceList::const_iterator i = replacements_.begin(); i != replacements_.end(); ++i)
462 result = replaceAll(result, i->search, i->replace);
464 switch (state_->format_)
466 case eHelpOutputFormat_Console:
468 const int baseFirstLineIndent = wrapper->settings().firstLineIndent();
469 const int baseIndent = wrapper->settings().indent();
470 result = repall(result, sandrTty);
471 result = replaceLinks(result);
472 std::string paragraph;
473 paragraph.reserve(result.length());
474 RstParagraphIterator iter(result);
475 while (iter.nextParagraph())
477 iter.getParagraphText(&paragraph);
478 wrapper->settings().setFirstLineIndent(baseFirstLineIndent + iter.firstLineIndent());
479 wrapper->settings().setIndent(baseIndent + iter.indent());
480 wrapper->wrap(paragraph);
482 wrapper->settings().setFirstLineIndent(baseFirstLineIndent);
483 wrapper->settings().setIndent(baseIndent);
484 break;
486 case eHelpOutputFormat_Rst:
488 result = repall(result, sandrRst);
489 result = replaceLinks(result);
490 result = replaceAll(result, "[REF]", "");
491 result = replaceAll(result, "[ref]", "");
492 result = removeExtraNewlinesRst(result);
493 wrapper->wrap(result);
494 break;
496 default: GMX_THROW(InternalError("Invalid help output format"));
500 /********************************************************************
501 * HelpWriterContext
504 HelpWriterContext::HelpWriterContext(TextWriter* writer, HelpOutputFormat format) :
505 impl_(new Impl(Impl::StatePointer(new Impl::SharedState(writer, format, nullptr)), 0))
509 HelpWriterContext::HelpWriterContext(TextWriter* writer, HelpOutputFormat format, const HelpLinks* links) :
510 impl_(new Impl(Impl::StatePointer(new Impl::SharedState(writer, format, links)), 0))
512 if (links != nullptr)
514 GMX_RELEASE_ASSERT(links->impl_->format_ == format,
515 "Links must have the same output format as the context");
519 HelpWriterContext::HelpWriterContext(Impl* impl) : impl_(impl) {}
521 HelpWriterContext::HelpWriterContext(const HelpWriterContext& other) : impl_(new Impl(*other.impl_))
525 HelpWriterContext::~HelpWriterContext() {}
527 void HelpWriterContext::setReplacement(const std::string& search, const std::string& replace)
529 impl_->addReplacement(search, replace);
532 HelpOutputFormat HelpWriterContext::outputFormat() const
534 return impl_->state_->format_;
537 TextWriter& HelpWriterContext::outputFile() const
539 return impl_->state_->file_;
542 void HelpWriterContext::enterSubSection(const std::string& title)
544 GMX_RELEASE_ASSERT(impl_->sectionDepth_ - 1 < static_cast<int>(std::strlen(g_titleChars)),
545 "Too deeply nested subsections");
546 writeTitle(title);
547 ++impl_->sectionDepth_;
550 std::string HelpWriterContext::substituteMarkupAndWrapToString(const TextLineWrapperSettings& settings,
551 const std::string& text) const
553 WrapperToString wrapper(settings);
554 impl_->processMarkup(text, &wrapper);
555 return wrapper.result();
558 std::vector<std::string> HelpWriterContext::substituteMarkupAndWrapToVector(const TextLineWrapperSettings& settings,
559 const std::string& text) const
561 WrapperToVector wrapper(settings);
562 impl_->processMarkup(text, &wrapper);
563 return wrapper.result();
566 void HelpWriterContext::writeTitle(const std::string& title) const
568 if (title.empty())
570 return;
572 TextWriter& file = outputFile();
573 file.ensureEmptyLine();
574 switch (outputFormat())
576 case eHelpOutputFormat_Console: file.writeLine(toUpperCase(title)); break;
577 case eHelpOutputFormat_Rst:
578 file.writeLine(title);
579 file.writeLine(std::string(title.length(), g_titleChars[impl_->sectionDepth_]));
580 break;
581 default: GMX_THROW(NotImplementedError("This output format is not implemented"));
583 file.ensureEmptyLine();
586 void HelpWriterContext::writeTextBlock(const std::string& text) const
588 TextLineWrapperSettings settings;
589 if (outputFormat() == eHelpOutputFormat_Console)
591 settings.setLineLength(78);
593 outputFile().writeLine(substituteMarkupAndWrapToString(settings, text));
596 void HelpWriterContext::paragraphBreak() const
598 outputFile().ensureEmptyLine();
601 void HelpWriterContext::writeOptionListStart() const {}
603 void HelpWriterContext::writeOptionItem(const std::string& name,
604 const std::string& value,
605 const std::string& defaultValue,
606 const std::string& info,
607 const std::string& description) const
609 TextWriter& file = outputFile();
610 switch (outputFormat())
612 case eHelpOutputFormat_Console:
614 TextTableFormatter& formatter(impl_->state_->consoleOptionsFormatter());
615 formatter.clear();
616 formatter.addColumnLine(0, name);
617 formatter.addColumnLine(1, value);
618 if (!defaultValue.empty())
620 formatter.addColumnLine(2, "(" + defaultValue + ")");
622 if (!info.empty())
624 formatter.addColumnLine(3, "(" + info + ")");
626 TextLineWrapperSettings settings;
627 settings.setIndent(11);
628 settings.setLineLength(78);
629 std::string formattedDescription = substituteMarkupAndWrapToString(settings, description);
630 file.writeLine(formatter.formatRow());
631 file.writeLine(formattedDescription);
632 break;
634 case eHelpOutputFormat_Rst:
636 std::string args(value);
637 if (!defaultValue.empty())
639 args.append(" (");
640 args.append(defaultValue);
641 args.append(")");
643 if (!info.empty())
645 args.append(" (");
646 args.append(info);
647 args.append(")");
649 file.writeLine(formatString("``%s`` %s", name.c_str(), args.c_str()));
650 TextLineWrapperSettings settings;
651 settings.setIndent(4);
652 file.writeLine(substituteMarkupAndWrapToString(settings, description));
653 break;
655 default: GMX_THROW(NotImplementedError("This output format is not implemented"));
659 void HelpWriterContext::writeOptionListEnd() const {}
661 } // namespace gmx