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drwxr-xr-x		..
-rw-r--r--	2041	CMakeLists.txt	blob \| blame \| history \| raw
-rw-r--r--	7322	legacymdrunoptions.cpp	blob \| blame \| history \| raw
-rw-r--r--	15329	legacymdrunoptions.h	blob \| blame \| history \| raw
-rw-r--r--	3538	legacysimulator.cpp	blob \| blame \| history \| raw
-rw-r--r--	7765	legacysimulator.h	blob \| blame \| history \| raw
-rw-r--r--	70924	md.cpp	blob \| blame \| history \| raw
-rw-r--r--	6203	mdmodules.cpp	blob \| blame \| history \| raw
-rw-r--r--	7056	mdmodules.h	blob \| blame \| history \| raw
-rw-r--r--	25131	mimic.cpp	blob \| blame \| history \| raw
-rw-r--r--	103102	minimize.cpp	blob \| blame \| history \| raw
-rw-r--r--	2024	minimize.h	blob \| blame \| history \| raw
-rw-r--r--	45647	replicaexchange.cpp	blob \| blame \| history \| raw
-rw-r--r--	4178	replicaexchange.h	blob \| blame \| history \| raw
-rw-r--r--	30924	rerun.cpp	blob \| blame \| history \| raw
-rw-r--r--	77929	runner.cpp	blob \| blame \| history \| raw
-rw-r--r--	25051	runner.h	blob \| blame \| history \| raw
-rw-r--r--	47054	shellfc.cpp	blob \| blame \| history \| raw
-rw-r--r--	5381	shellfc.h	blob \| blame \| history \| raw
-rw-r--r--	2792	simulationcontext.cpp	blob \| blame \| history \| raw
-rw-r--r--	5981	simulationcontext.h	blob \| blame \| history \| raw
-rw-r--r--	31590	tpi.cpp	blob \| blame \| history \| raw