Fix total time measurement with separate PME nodes
[gromacs/AngularHB.git] / include / sortwater.h
blob9973ba4618f471d18620e9086466204a5ffdbc58
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
5 * Copyright (c) 2001-2004, The GROMACS development team,
6 * check out http://www.gromacs.org for more information.
7 * Copyright (c) 2012,2013, by the GROMACS development team, led by
8 * David van der Spoel, Berk Hess, Erik Lindahl, and including many
9 * others, as listed in the AUTHORS file in the top-level source
10 * directory and at http://www.gromacs.org.
12 * GROMACS is free software; you can redistribute it and/or
13 * modify it under the terms of the GNU Lesser General Public License
14 * as published by the Free Software Foundation; either version 2.1
15 * of the License, or (at your option) any later version.
17 * GROMACS is distributed in the hope that it will be useful,
18 * but WITHOUT ANY WARRANTY; without even the implied warranty of
19 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
20 * Lesser General Public License for more details.
22 * You should have received a copy of the GNU Lesser General Public
23 * License along with GROMACS; if not, see
24 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
25 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
27 * If you want to redistribute modifications to GROMACS, please
28 * consider that scientific software is very special. Version
29 * control is crucial - bugs must be traceable. We will be happy to
30 * consider code for inclusion in the official distribution, but
31 * derived work must not be called official GROMACS. Details are found
32 * in the README & COPYING files - if they are missing, get the
33 * official version at http://www.gromacs.org.
35 * To help us fund GROMACS development, we humbly ask that you cite
36 * the research papers on the package. Check out http://www.gromacs.org.
39 #ifndef _sortwater_h
40 #define _sortwater_h
41 #include "visibility.h"
42 #include "typedefs.h"
44 #ifdef __cplusplus
45 extern "C" {
46 #endif
48 GMX_LIBGMX_EXPORT
49 void randwater(int astart, int nwater, int nwatom,
50 rvec x[], rvec v[], int *seed);
51 /* Randomize the order of nwater molecules of length nwatom, the
52 * first atom of which is at astart.
53 * If v is not NULL it will be shuffled along
54 * IS NOT THREAD SAFE
58 GMX_LIBGMX_EXPORT
59 void sortwater(int astart, int nwater, int nwatom, rvec x[], rvec v[]);
60 /* Sort the order of nwater molecules of length nwatom on X coordinate
61 * If v is not NULL it will be shuffled along
62 * IS NOT THREAD SAFE
65 GMX_LIBGMX_EXPORT
66 void mkcompact(int astart, int nwater, int nwatom, rvec x[], rvec v[],
67 int nnode, matrix box);
68 /* Make compact subboxes
69 * IS NOT THREAD SAFE */
71 #ifdef __cplusplus
73 #endif
75 #endif