docs/user-guide/index.rst

   1 **********
   2 User guide
   3 **********
   4
   5 .. highlight:: bash
   6
   7 This guide provides
   8
   9 * material introducing |Gromacs|
  10 * practical advice for making effective use of |Gromacs|.
  11
  12 For getting, building and installing |Gromacs|, see the
  13 :doc:`/install-guide/index`.
  14 For background on algorithms and implementations, see the
  15 `reference manual`_.
  16
  17 .. _reference manual: gmx-manual-parent-dir_
  18
  19 .. toctree::
  20    :maxdepth: 2
  21
  22    getting-started
  23    floating-point
  24    system-preparation
  25    cutoff-schemes
  26    mdrun-features
  27    mdrun-performance
  28    managing-simulations
  29    mdp-options
  30    run-time-errors
  31    file-formats
  32    cmdline
  33    environment-variables
  34    terminology