3 <TITLE>Getting started - Gmxdemo
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11 <td ALIGN=LEFT VALIGN=TOP WIDTH=
280><br><h2>Getting started - Gmxdemo
</h2>
12 <font size=-
1><A HREF=
"../online.html">Main Table of Contents
</A></font><br><br></td>
13 </TABLE></TD><TD WIDTH=
"*" ALIGN=RIGHT VALIGN=BOTTOM
><p><B>VERSION
4.0<br>
14 Sun
18 Jan
2009</B></td></tr></TABLE>
17 <P><H2>The GROMACS demo
</A></H2>
18 The demo is designed to demonstrate the user-friendlyness
19 of the GROMACS software package. The only non-friendly part is
20 that it requires the C shell to run the script. If your shell
21 is e.g. bash (common on Linux), first start the C shell with the
22 command 'tcsh'. To run the demo, first move
23 to your
<tt>tutor/gmxdemo
</tt> directory:
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35 And then start the demo script:
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49 This demo handles a complete Molecular Dynamics simulation of a
50 peptide in water, starting from a
<a href=
"pdb.html">pdb
</a>
51 structure. You will be asked to press return a few times, and to run the
52 trajectory viewer. Please read the instructions as you go along.
54 <H3>More Info
</A></h3>
56 More info can be found in the
57 <A HREF=
"flow.html">flowchart
</A>
58 (for a quick overview) and the
59 <A HREF=
"../gmxfaq.html">GROMACS FAQ (Frequently asked questions)
</A>.
64 <a href=
"water.html"><h3>Go to the next step
</h3></a>