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3 <TITLE>Getting started - Gmxdemo</TITLE>
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11 <td ALIGN=LEFT VALIGN=TOP WIDTH=280><br><h2>Getting started - Gmxdemo</h2>
12 <font size=-1><A HREF="../online.html">Main Table of Contents</A></font><br><br></td>
13 </TABLE></TD><TD WIDTH="*" ALIGN=RIGHT VALIGN=BOTTOM><p><B>VERSION 4.0<br>
14 Sun 18 Jan 2009</B></td></tr></TABLE>
15 <HR>
17 <P><H2>The GROMACS demo</A></H2>
18 The demo is designed to demonstrate the user-friendlyness
19 of the GROMACS software package. The only non-friendly part is
20 that it requires the C shell to run the script. If your shell
21 is e.g. bash (common on Linux), first start the C shell with the
22 command 'tcsh'. To run the demo, first move
23 to your <tt>tutor/gmxdemo</tt> directory:
24 <br><br>
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29 <tt>cd tutor/gmxdemo
30 </tt>
31 <td></td>
32 </tr>
33 </table>
34 <br>
35 And then start the demo script:
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42 <tt> demo
43 </tt>
44 <td></td>
45 </tr>
46 </table>
47 <br>
49 This demo handles a complete Molecular Dynamics simulation of a
50 peptide in water, starting from a <a href="pdb.html">pdb</a>
51 structure. You will be asked to press return a few times, and to run the
52 trajectory viewer. Please read the instructions as you go along.
54 <H3>More Info</A></h3>
55 <P>
56 More info can be found in the
57 <A HREF="flow.html">flowchart</A>
58 (for a quick overview) and the
59 <A HREF="../gmxfaq.html">GROMACS FAQ (Frequently asked questions)</A>.
60 </P>
62 <br><hr><br>
64 <a href="water.html"><h3>Go to the next step</h3></a>
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