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   1 <title>map file format</title>
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   4 <h2>map file format</h2>
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   7 <TD><font size=-1><A HREF="../online.html">Main Table of Contents</A></font></TD>
   8 <TD ALIGN=RIGHT><B>VERSION 4.0</B></TR>
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  10 <TD ALIGN=RIGHT><B>Sun 18 Jan 2009</B></TR></TABLE></CENTER><HR>
  11 <H3>Description</H3>
  12 This file maps matrix data to RGB values which is used by the
  13 <a href="do_dssp.html">do_dssp</a> program.<p>
  14 The format of this file is as follow: first line number of elements
  15 in the colormap. Then for each line: The first character is
  16 a code for the secondary structure type.
  17 Then comes a string for use in the legend of the plot and then the
  18 R (red) G (green) and B (blue) values. <p>
  19 In this case the colors are
  20 (in order of appearance): white, red, black, cyan, yellow, blue,
  21 magenta, orange.
  22 <pre>
  23 8
  24 ~       Coil            1.0       1.0     1.0
  25 E       B-Sheet         1.0       0.0     0.0
  26 B       B-Bridge        0.0       0.0     0.0
  27 S       Bend            0.0       0.8     0.8
  28 T       Turn            1.0       1.0     0.0
  29 H       A-Helix         0.0       0.0     1.0
  30 G       3-Helix         1.0       0.0     1.0
  31 I       5-Helix         1.0       0.6     0.0
  32 </pre>
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