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drwxr-xr-x		..
-rwxr-xr-x	1913	analyze-clusters.py	blob \| blame \| history \| raw
-rw-r--r--	260	chain_likelihood.m	blob \| blame \| history \| raw
-rw-r--r--	408	chain_log_likelihood.m	blob \| blame \| history \| raw
-rw-r--r--	6181	em_kmc.m	blob \| blame \| history \| raw
-rw-r--r--	1329	generate_sequences.m	blob \| blame \| history \| raw
-rw-r--r--	397	get_cluster_mappings.m	blob \| blame \| history \| raw
-rw-r--r--	2291	get_max_prob_sequence.m	blob \| blame \| history \| raw
-rw-r--r--	181	get_max_prob_sequences.m	blob \| blame \| history \| raw
-rw-r--r--	976	init_kmc.m	blob \| blame \| history \| raw
-rw-r--r--	1065	load_traces.m	blob \| blame \| history \| raw
-rw-r--r--	729	max_likelihood_cluster.m	blob \| blame \| history \| raw
-rw-r--r--	708	max_likelihood_clusters.m	blob \| blame \| history \| raw
-rw-r--r--	729	model_likelihood.m	blob \| blame \| history \| raw
-rw-r--r--	1066	model_log_likelihood.m	blob \| blame \| history \| raw
-rw-r--r--	364	split_X.m	blob \| blame \| history \| raw
-rw-r--r--	416	test_k_parameter.m	blob \| blame \| history \| raw
-rw-r--r--	1007	total_model_log_likelihood.m	blob \| blame \| history \| raw
-rw-r--r--	726	zero_prob_transitions.m	blob \| blame \| history \| raw