5 * No new features. This is a candidate for a stable release.
7 * Bug fixes and man page updates.
9 News about GNU Parallel:
11 * How to Implement Parallelism and Concurrency Control (Queue) in Shell
12 https://www.alibabacloud.com/blog/how-to-implement-parallelism-and-concurrency-control-queue-in-shell_601908?spm=a2c65.11461433.0.0.4ee35355IOL2MZ
19 * No new features. This is a candidate for a stable release.
21 * Bug fixes and man page updates.
28 * --pipe --block works similar to --pipepart --block if --block size is negative.
30 * DBURLs can be written with / instead of %2F for sqlite and CSV.
32 * Bug fixes and man page updates.
34 News about GNU Parallel:
36 * Embarrassingly GNU parallel
37 https://dengin.xyz/blog/2024/10/24/embarrassingly-gnu-parallel/
39 * GNU Parallel for Your Terminal Tasks
40 https://erolrecep.github.io/posts/gnuparallel_for_your_terminal_tasks/
42 * How to leverage GNU parallel to utilize multiple cores while running AUGUSTUS
43 https://lifescienceshub.wixsite.com/lifesciencehub/post/how-to-leverage-gnu-parallel-to-utilize-multiple-cores-while-running-augustus
45 * GNU Parallel: The Good Parts
46 https://diekmeier.de/posts/2024-11-17-gnu-parallel/
48 * Put your CPU to work with GNU Parallel
49 https://www.redhat.com/en/blog/gnu-parallel
56 * No new features. This is a candidate for a stable release.
58 * Bug fixes and man page updates.
60 News about GNU Parallel:
62 * Separate arguments with a custom separator in GNU Parallel
63 https://boxofcuriosities.co.uk/post/separate-arguments-with-a-custom-separator-in-gnu-parallel
65 * GNU parallel is underrated
66 https://amontalenti.com/2021/11/10/parallel
68 * Unlocking the Power of Supercomputers: My HPC Adventure with 2800
69 Cores and GNU Parallel
70 https://augalip.com/2024/03/10/unlocking-the-power-of-supercomputers-my-hpc-adventure-with-2800-cores-and-gnu-parallel/
72 * Converting WebP Images to PNG Using parallel and dwebp
73 https://bytefreaks.net/gnulinux/bash/converting-webp-images-to-png-using-parallel-and-dwebp
80 * --fast disables a lot of functionality to speed up running jobs.
82 * Bug fixes and man page updates.
84 News about GNU Parallel:
86 * Job requiring GNU Parallel knowledge
87 https://www.capgemini.com/ca-en/jobs/Id6D4pEBZ6aB2WPS2aAJ/systems-engineer/
94 * --match Match input source with regexp to set replacement fields.
96 * {:%fmt} Use printf formatting of replacement strings.
98 * Bug fixes and man page updates.
100 News about GNU Parallel:
102 * Powerful GNU parallel, more than a loop
103 https://www.linkedin.com/pulse/powerful-gnu-parallel-more-than-loop-zhenguo-zhang-18dxc
105 * How To Increase File Transfer Speed Using Parallel Rsync?
106 https://contentbase.com/blog/increase-file-transfer-speed-parallel-rsync/
108 * Converting WebP Images to PNG Using parallel and dwebp
109 https://bytefreaks.net/2024/07/27
111 * Turbocharging the Box CLI with GNU Parallel
112 https://medium.com/box-developer-blog/turbocharging-the-box-cli-with-gnu-parallel-ee44c48811c0
119 * No new features. This is a candidate for a stable release.
121 * Bug fixes and man page updates.
123 News about GNU Parallel:
125 * Scientific Workflows at Scale using GNU Parallel
126 https://web.cvent.com/event/f318e73c-2230-432a-a044-b75625020543/websitePage:afd80266-008e-414b-9f94-2fd9b4dd1924?session=fe79a785-ec60-414c-8d2b-c29208f53d4c&shareLink=true
128 * Use GNU Parallel to render blender movies distributed by a bunch of
129 nodes https://github.com/tfmoraes/blender_gnu_parallel_render
131 * Lessons Learned from Scaling to Multi-Terabyte Datasets
132 https://v2thegreat.com/2024/06/19/lessons-learned-from-scaling-to-multi-terabyte-datasets/
134 * Efisiensi Maksimal: Cara Paralelisasi Perintah di CLI Linux
135 https://medium.com/@nfrozi/efisiensi-maksimal-cara-paralelisasi-perintah-di-cli-linux-f4fda3afe2a0
137 * Introduction to GNU parallel
138 https://datascience.101workbook.org/06-hpc/06-parallel/01-intro-to-gnu-parallel/#gsc.tab=0
145 * Bug fixes and man page updates.
147 News about GNU Parallel:
149 * Howto - Parallel: lanciare comandi in simultanea
150 https://github.com/linuxhubit/linuxhub.it/blob/main/_posts/2024-06-14-howto-parallel-per-lanciare-comandi-in-simultanea.md
152 * Implementing Concurrency in Shell Scripts
153 https://dev.to/siddhantkcode/implementing-concurrency-in-shell-scripts-521o
160 * --onall now supports sshpass - user:pass@host.
162 * --memfree kills do not count as --retries.
164 * Bug fixes and man page updates.
171 * Bug fixes and man page updates.
178 * Polarhome.com is down for good. This means that only platforms that
179 can be run in Vagrant 2.3.7 on x86-64 will be supported going
182 * Bug fixes and man page updates.
189 * Bug fixes and man page updates.
196 * --sshlogin supports ranges: server[01-12,15] 10.0.[1-10].[2-254]
198 * --plus enables {slot-1} and {seq-1} = {%}-1 and {#}-1 to count from 0.
200 * env_parallel.{sh,ash,dash,bash,ksh,zsh} is now the same script.
202 * Bug fixes and man page updates.
209 * --combine-exec combines GNU Parallel with any executable.
211 * Bug fixes and man page updates.
213 News about GNU Parallel:
215 * The first GNU Parallel video that seems to be completely AI
216 generated: https://www.youtube.com/watch?v=Ie8eAhlEHOg
218 * GNU Parallel and “fail immediately if any fails” problem
219 https://antiarchitect.medium.com/gnu-parallel-and-fail-immediately-if-any-fails-problem-481ddea690ba
226 * -a file1 -a +file2 will link file2 to file1 similar to ::::+
228 * --bar shows total time when all jobs are done.
230 * Bug fixes and man page updates.
232 News about GNU Parallel:
234 * Using GNU Parallel in bash scripts to optimize python processes
235 https://climate-cms.org/posts/2023-11-02-gnu-parallel.html
242 * Bug fixes and man page updates.
244 News about GNU Parallel:
246 * Resume long parallel jobs
247 https://ginolhac.github.io/posts/2023-10-02_resume-parallel/index.html
249 * Efficiency and Speed with GNU Parallel
250 https://dev.to/0xog_pg/efficiency-and-speed-with-gnu-parallel-loo
257 * Bug fixes and man page updates.
259 News about GNU Parallel:
261 * This CLI Tool is AMAZING | Prime Reacts
262 https://www.youtube.com/watch?v=ry49BZA-tgg
264 * New Data Engineering Stack - GNU parallel
265 https://www.linkedin.com/feed/update/urn:li:activity:7100509073149743104?updateEntityUrn=urn%3Ali%3Afs_feedUpdate%3A%28V2%2Curn%3Ali%3Aactivity%3A7100509073149743104%29
272 * Bug fixes and man page updates.
274 News about GNU Parallel:
276 * GNU Parallel, where have you been all my life?
277 https://alexplescan.com/posts/2023/08/20/gnu-parallel/
279 * Parallel (multithreaded) music download from Youtube
280 https://hrna.moe/?p=parallel-multithread-music-download
287 * Time functions (e.g. yyyymmdd($secs) ) can now take secs since epoch as argument.
289 * Bug fixes and man page updates.
296 * Bug fixes and man page updates.
298 News about GNU Parallel:
300 * Run faster in the terminal with Gnu Parallel https://www.youtube.com/watch?v=fSYVYsKXWP0
302 * Building an (Evil) Android Phone Bot Army http://blog.faucher.net/2023/05/building-evil-android-phone-bot-army.html
309 * Bug fixes and man page updates.
311 News about GNU Parallel:
313 * Introduction to parallel computing https://youtu.be/fvrHXV8yqU4?t=2874
315 * Script for summarizing GNU parallel joblog file https://github.com/gavinmdouglas/parallel_joblog_summary
317 * How to copy a single file to multiple directories in Linux or Unix https://www.cyberciti.biz/faq/linux-unix-copy-a-file-to-multiple-directories-using-cp-command/
319 * Search in your Jupyter notebooks from the CLI, fast. https://dev.to/attilavm/search-in-your-jupyter-notebooks-from-the-cli-fast-1408
321 * Parallel Job Orchestration with GNU Parallel https://www.youtube.com/watch?v=2tVpUfND3LI
323 * Optional Individual Submission 4 Job Handling 20266001 - GNU Parallel https://www.youtube.com/watch?v=eC_RPuFCcU8
325 * DOE Cross-facility Workflows Training - April 12, 2023 https://www.youtube.com/watch?v=Ke3sirM-aQQ
327 * How to run MiXCR 4.x on multiple patient samples using GNU Parallel https://www.youtube.com/watch?v=OXg-WHlB_dk
334 * --jobs evaluates expression: +3*log(55)% = ncpu*1.12
336 * Bug fixes and man page updates.
338 News about GNU Parallel:
340 * Running shell script in parallel
341 https://w3toppers.com/running-shell-script-in-parallel/
343 * Simulating climate risk scenarios for the Amazon Rainforest
344 https://aws.amazon.com/blogs/hpc/simulating-climate-risk-scenarios-for-the-amazon-rainforest/
346 * How To Use Your Entire CPU In Bash With Parallel
347 https://bash-prompt.net/guides/parallell-bash/
349 * Bash - parallel command execution
350 https://medium.com/linuxstories/bash-parallel-command-execution-d4bd7c7cc1d6
352 * 3 tips for faster batch post-pro
353 https://www.cfdengine.com/newsletter/142/
360 * Better support for wide characters in --latest-line.
362 * Support for rsync 3.2.7.
364 * Bug fixes and man page updates.
371 * parsort: --parallel now does closer to what you expect.
373 * parallel: --files0 is --files but \0 separated.
375 * Bug fixes and man page updates.
377 News about GNU Parallel:
379 * 5 great Perl scripts to keep in your sysadmin toolbox
380 https://www.redhat.com/sysadmin/perl-scripts
387 * Bug fixes and man page updates.
389 News about GNU Parallel:
391 * The Best Ethical Hacking Tools of 2023 (and their basic usage)
392 https://www.purevpn.com/blog/the-best-hacking-tools-of-2023/#11_GNU_Parallel
394 * GNU Parallel: criando atividades em paralelo com shell script
395 https://www.vivaolinux.com.br/artigo/GNU-Parallel-criando-atividades-em-paralelo-com-shell-script/
402 * --results works on more file systems (e.g. fat)
404 * Joblog gives the same exit code as bash.
406 News about GNU Parallel:
408 * Programação Shell Linux: Paralelismo de processos com GNU parallel
409 https://www.youtube.com/watch?v=duheTWLIrp8
411 * Talk Python: Data Science from the Command Line
412 https://talkpython.fm/episodes/show/392/data-science-from-the-command-line
419 * Support for IPv6 adresses and _ in hostnames in --sshlogin.
421 * Use --total-jobs for --eta/--bar if generating jobs is slow.
423 * A lot of bugs fixed in --latest-line.
425 * Better support for MSYS2.
427 * Better Text::CSV error messages.
429 * --bar supports UTF8.
431 * Bug fixes and man page updates.
433 News about GNU Parallel:
435 * GNU Parallel is now on Mastodon: @GNU_Parallel@hostux.social
442 * --latest-line chops line length at terminal width.
444 * Determine max command length faster on Microsoft Windows.
446 News about GNU Parallel:
448 * Distributed Task Processing with GNU Parallel
449 https://www.youtube.com/watch?v=usbMLggdMgc
451 * GNU Parallel workflow for many small, independent runs
452 https://docs.csc.fi/support/tutorials/many/
454 * Copy a File To Multiple Directories With A Single Command on Linux
455 https://www.linuxfordevices.com/tutorials/linux/copy-file-to-multiple-directories-with-one-command
457 * Behind The Scenes: The Power Of Simple Command Line Tools At Cloud
459 https://blog.gdeltproject.org/behind-the-scenes-the-power-of-simple-command-line-tools-at-cloud-scale/
461 * Run lz4 compression in parallel using GNU parallel
462 https://www.openguru.com/2022/09/
464 * Xargs / Parallel With Code Examples
465 https://www.folkstalk.com/2022/09/xargs-parallel-with-code-examples.html
467 * Parallel processing on a single node with GNU Parallel
468 https://www3.cs.stonybrook.edu/~cse416/Section01/Slides/SeaWulfIntro_CSE416_09222022.pdf
470 * Using GNU parallel painlessly -- from basics to bioinformatics job
471 orchestration https://www.youtube.com/watch?v=qypUdm-IE9c
478 * --colour-failed only changes output for failing jobs.
480 * Password for --sshlogin can be put in $SSHPASS.
482 * Examples are moved from `man parallel` to `man parallel_examples`.
484 * Bug fixes and man page updates.
486 News about GNU Parallel:
488 * WOMM - Works On My Machine uses GNU Parallel https://pypi.org/project/womm/
495 * --header 0 allows using {filename} as replacement string
497 * Bug fixes and man page updates.
504 * --colour-failed will color output red if the job fails.
506 * sql: support for InfluxDB.
508 * Polarhome.com is dead, so these OSs are no longer supported: AIX
509 HPUX IRIX Minix OPENSTEP OpenIndiana OpenServer QNX Solaris Syllable
510 Tru64 Ultrix UnixWare.
512 * Bug fixes and man page updates.
519 * , can be used in --sshlogin if quoted as \, or ,,
521 * --plus {/#regexp/str} replace ^regexp with str.
523 * --plus {/%regexp/str} replace regexp$ with str.
525 * --plus {//regexp/str} replace every regexp with str.
527 * 'make install' installs bash+zsh completion files.
529 * Bug fixes and man page updates.
536 * --latest-line shows only the latest line of running jobs.
538 * --color colors output in different colors per job (this obsoletes --ctag).
540 * xargs compatibility: --process-slot-var foo sets $foo to jobslot-1.
542 * xargs compatibility: --open-tty opens the terminal on stdin (standard input).
544 * Bug fixes and man page updates.
546 News about GNU Parallel:
548 * Building a fault-tolerant work queue for command-line executions
549 with GNU Parallel https://www.jvt.me/posts/2022/04/28/shell-queue/
551 * Make your code do more, with less
552 https://www.blopig.com/blog/2022/05/make-your-code-do-more-with-less/
554 * W09 B IntroHPC II 20220513 gnu parallel
555 https://www.youtube.com/watch?v=2udvC90rIa4
562 * sash is no longer supported as shell.
564 * --retries 0 is an alias for --retries 2147483647.
566 * --shell-completion returns shell completion code.
568 * --ssh-login-file reloads every second.
570 * --parset is replaced with --_parset because it is only used internally.
572 * sem --pipe passes STDIN (standard input) to the command.
574 * Bug fixes and man page updates.
581 * --sshlogin user:password@host is now supported by using sshpass.
583 * Bug fixes and man page updates.
585 News about GNU Parallel:
587 * Bash: GNU Parallel with Curl
588 https://gist.github.com/CMCDragonkai/5914e02df62137e47f32?permalink_comment_id=2617456
590 * The Pipe Operator Explained
591 https://medium.com/geekculture/the-pipe-operator-explained-cbd41e23775a
598 * Encoding of remote commands has changed. This limits the length of
599 remote commands to less than half. It also requires $REMOTE_TMPDIR
600 to be writable. It makes this release beta quality.
602 * Time functions hh_mm_ss() hhmmss() hh_mm() hhmm() are now available
605 * Many options in the man page for parallel now has 'see also' for
608 * parallel_options_map.pdf is a map showing which options other
611 * {uniq} added to --plus to only run jobs with unique values.
613 * sem --fg exits with the exit code of the job.
615 * Bug fixes and man page updates.
622 * GNU Parallel turned 20 on the 2022-01-06
623 https://www.gnu.org/software/parallel/20th-birthday.html
625 * Bug fixes and man page updates.
627 News about GNU Parallel:
629 * Save Time with Modern Search Techniques
630 https://www.eventbrite.com/e/ohio-information-security-forum-january-2022-monthly-meeting-tickets-240632737997
632 * Bash "Fail immediately if any fails"
633 https://morioh.com/p/a01b883dc57c
635 * Re-encoding the EmacsConf videos with FFmpeg and GNU Parallel
636 https://sachachua.com/blog/2021/12/re-encoding-the-emacsconf-videos-with-ffmpeg-and-gnu-parallel/
638 * Bash 平行 https://learntutorials.net/ja/bash/topic/10778/%E5%B9%B3%E8%A1%8C
645 * Bug fixes and man page updates.
647 News about GNU Parallel:
649 * The first version of Parallel will be 20 years on 2022-01-06
651 * HerrComp Intro HPC gnu parallel
652 https://www.youtube.com/watch?v=tcgjKWfgWQY
655 https://qiita.com/toramili/items/44a770cfb9ef1edc9e26
657 * How To Install parallel on Ubuntu 20.04
658 https://installati.one/ubuntu/20.04/parallel/
660 * Distributing embarrassingly parallel tasks GNU Parallel
661 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
668 * Bug fixes and man page updates.
670 News about GNU Parallel:
672 * Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
673 https://www.youtube.com/watch?v=xIpPPZXDKGU
675 * SMACK 12 - Do it faster! Simple ways to use all those cores (and
676 GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk
683 * Don't postpone output until $jobslots jobs have been started.
685 * Bug fixes and man page updates.
687 News about GNU Parallel:
689 * How to Install GNU Parallel using Anaconda | Linux
690 https://www.youtube.com/watch?v=UwDNVP-L0qA
692 * Install GNU Parallel from source code | Linux
693 https://www.youtube.com/watch?v=PIyJH4ben5o
695 * Compiling GNU Parallel on CentOS-7
696 https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/
703 * Bug fixes and man page updates.
705 News about GNU Parallel:
707 * 3 Programs that will Level Up your Bash Game
708 https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291
710 * I Summarized 100+ Command-Line Tools for Data Scientists in 15
712 https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe
714 * Speed up Your Builds by Parallelizing
715 https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing
717 * Bash: GNU Parallel with Curl
718 https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2
725 * --ctag/--ctagstring colors the tag in different colors for each job.
727 * You can use unit prefixes (k, m, g, etc) with -n -N -L.
729 * Bug fixes and man page updates.
731 News about GNU Parallel:
733 * Parallelising jobs with GNU parallel
734 https://blog.ronin.cloud/gnu-parallel/
736 * Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
737 grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html
739 * How to execute commands in parallel in Linux
740 https://net2.com/how-to-execute-commands-in-parallel-in-linux/
747 * --results no longer prints the result to standard output (stdout) as
749 https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
751 * parset supports associative arrays in bash, ksh, zsh.
753 * Online HTML is now generated by Sphinx.
755 * Bug fixes and man page updates.
757 News about GNU Parallel:
759 * Cleaning Up Scanned Documents with Open Source Tools
760 https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b
767 * Bug fixes and man page updates.
769 News about GNU Parallel:
771 * How to use GNU Parallel
772 https://techtipbits.com/linux/how-to-use-gnu-parallel/
774 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
775 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
777 * Use Parallel to split by line
778 https://madflex.de/use-parallel-to-split-by-line/
780 * Optimizing long batch processes or ETL by using buff/cache properly
781 II (parallelizing network operations)
782 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
784 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
791 * --plus includes {%%regexp} and {##regexp}.
793 * Bug fixes and man page updates.
795 News about GNU Parallel:
797 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
798 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
800 * HerrComp Gnu parallel, c++11 threads 2021 04 28
801 https://www.youtube.com/watch?v=wDd9F9nn0qA
803 * Distributing embarrassingly parallel tasks GNU Parallel
804 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
806 * Job Parallelization on Niagara
807 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
809 * Use Parallel to split by line
810 https://madflex.de/use-parallel-to-split-by-line/
812 * m1 multi-core batch convert with gpu parallel + ffmpeg
813 https://www.youtube.com/watch?v=hAuc0YsXv6A
820 * Bug fixes and man page updates.
822 News about GNU Parallel:
824 * Bioinformatics tutorials - linux and shell advanced - parallel
825 https://www.youtube.com/watch?v=5leL8pyl0XA
827 * GNU Parallel for quick gains
828 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
830 * Processing Linux Commands in Parallel
831 https://www.baeldung.com/linux/processing-commands-in-parallel
834 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
836 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
838 * Parallel Grep and Awk
839 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
841 * Getting things done with shell scripting
842 https://doma.dev/blog/get-things-done-with-bash/
847 * Bug fixes and man page updates.
849 News about GNU Parallel:
851 * The very first version of Parallel dated 2002-01-06 was found in an
862 (".PHONY : job$jobnr\n",
866 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
868 open (MAKE, "| make -k -f - -j $processes") || die;
869 print MAKE @makefile;
872 * Introduction to GNU Parallel
873 https://www.youtube.com/watch?v=Kj-6JkAqw-8
875 * Using GNU Parallel with GooseSLURM
876 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
879 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
884 * --filter only run jobs where the filter is true. The filter can
885 contain replacement strings and Perl code such as: '{1} < {2}+1'
887 * --template takes a text file as a template with replacement
888 strings. Then it replaces the replacement strings and saves it
889 under a new filename.
891 * --plus implements {0%} {0#} replacement string for zero padded slot
894 * Warn that you probably mean -d '\r\n' if the first 3 values end in
897 * {= perlexpression =} must return the same value, if run twice on the
900 * Man pages available as .rst-format.
902 * Bug fixes and man page updates.
904 News about GNU Parallel:
906 * A short tutorial on Gnu Parallel
907 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
909 * 5 reasons why I love coding on Linux
910 https://opensource.com/article/21/2/linux-programming
912 * Simple Tutorial to install & use GNU Parallel
913 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
915 * LiDO3 - first contact
916 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
918 * Rill Stage 2-1: Ways of command-line data analysis
919 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
921 * Introduction to GNU Parallel
922 https://blog.knoldus.com/introduction-to-gnu-parallel/
924 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
929 * --memsuspend suspends jobs when there is little memory free. This
930 way you can run jobs in parallel that added up potentially will take
931 up more RAM than is available.
933 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
934 the hostgroup given on the argument when using --hostgroup.
936 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
937 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
938 yyyymmdd() hash($str)
940 * Bug fixes and man page updates.
942 News about GNU Parallel:
944 * Software Engineering For Scientists
945 https://canvas.stanford.edu/courses/133091
947 * Optional Individual Submission 4 Job Handling - GNU Parallel
948 https://www.youtube.com/watch?v=-tX0bFAYAxM
950 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
951 节点https://www.codenong.com/25172209/
954 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
959 * --pipe engine changed making --pipe alpha quality.
961 * --results -.json outputs results as JSON objects on stdout (standard
964 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
965 spawned too quickly, --delay will exponentially increase.
967 * --plus sets {hgrp} that gives the intersection of the hostgroups of
968 the job and the sshlogin that the job is run on.
970 * Bug fixes and man page updates.
972 News about GNU Parallel:
974 * Best practices for accelerating data migrations using AWS Snowball
976 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
978 * Pass the Output of a Command as an Argument for Another
979 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
981 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
982 https://www.youtube.com/watch?v=t_v2Otgt87g
987 * Bug fixes and man page updates.
989 News about GNU Parallel:
991 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
996 * --termseq now works for jobs running remotely.
998 * parsort: Performance optimized for 64-core machines.
1000 * Bug fixes and man page updates.
1002 News about GNU Parallel:
1004 * Juan Sierra Pons has made a testimonial:
1005 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
1007 * 「翻译」在生物信息学中使用 GNU-Parallel
1008 https://cloud.tencent.com/developer/article/1705499
1013 * New CPU detection for GNU/Linux.
1015 * Bug fixes and man page updates.
1017 News about GNU Parallel:
1019 * Aug 21, 2020 - More Unix tools
1020 https://floki.blog/2020/08/more_unix_tools
1025 New in this release:
1027 * Max command line length is changed for MacOS - making this version
1028 beta quality for MacOS.
1030 * Bug fixes and man page updates.
1035 New in this release:
1037 * No new functionality
1039 * Bug fixes and man page updates.
1041 News about GNU Parallel:
1043 * Tips for Running Jobs on your VM
1044 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1046 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
1047 https://www.youtube.com/watch?v=QSFLTEyCKvo
1050 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
1052 * Linux-Fu: Parallel Universe
1053 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
1055 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
1057 * Introducing Parallel into Shell
1058 https://www.petelawson.com/post/parallel-in-shell/
1060 * AV1 encoding parallelization with GNU Parallel
1061 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
1063 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
1064 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
1069 New in this release:
1071 * No new functionality
1073 * Bug fixes and man page updates.
1075 News about GNU Parallel:
1077 * GNU Parallel is used at NERSC:
1078 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
1080 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
1082 * Lab Meeting technical talk
1083 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
1085 * Open Sky Software Website Credits
1086 https://www.openskysoftware.com/site-credits.htm
1088 * Speed up your Python Scripts using Ubuntu and GNU Parallel
1089 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
1091 * Indispensable command-line tools
1092 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
1094 * GNU Parallel for simulations
1095 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
1097 * Introduction to GNU parallel
1098 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
1103 New in this release:
1105 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
1106 is equal to {%} unless the job is being retried. See {%} for
1109 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
1110 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
1111 becomes: '/usr/bin/specialssh user@host'
1113 * While running a job $PARALLEL_SSHHOST is the host part of an
1114 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
1117 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
1118 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
1120 * Bug fixes and man page updates.
1122 News about GNU Parallel:
1124 * Portable Batch System (PBS) & GNU Parallel - Running a Program
1125 Multiple Times in Parallel
1126 https://www.youtube.com/watch?v=6ccbWu6Befo
1128 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
1130 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
1131 .sh scripts with only 1 command
1132 https://www.youtube.com/watch?v=trQuA_wmWjg
1137 This release celebrates GNU Parallel's 10 years as a GNU tool:
1139 > commit ed2dfb1043768154d4e7678e01e10287155fa834
1140 > Author: Ole Tange <ole@tange.dk>
1141 > Date: Thu Apr 22 01:23:00 2010 +0200
1143 > Name change: Parallel is now GNU Parallel.
1144 > Basic structure for sshlogin and sshloginfile.
1146 New in this release:
1148 * parsort makes GNU sort run faster for files with more than 1M lines.
1150 * Bug fixes and man page updates.
1152 News about GNU Parallel:
1154 * Several clusters have updated their documentation of GNU Parallel:
1155 https://www.grid5000.fr/w/GNU_Parallel
1156 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
1157 http://www.hpc.lsu.edu/training/archive/tutorials.php
1159 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
1161 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
1163 * Virtual Workshop: Running Jobs in Parallel on Savio
1164 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
1166 * Free Concurrency with GNU Parallel
1167 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
1172 * Bug fixes and man page updates.
1174 News about GNU Parallel:
1176 * The GNU Parallel course in Copenhagen is cancelled
1177 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
1179 * The GNU Parallel course in Århus is cancelled
1180 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
1182 * The 10 year anniversary may be cancelled, see
1183 https://www.gnu.org/software/parallel/10-years-anniversary.html
1185 * Running shell commands in parallel, via GNU Parallel
1186 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
1188 * Faster nmap scanning with the help of GNU parallel
1189 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
1194 * Bug fixes and man page updates.
1199 * --blocktimeout dur - Time out for reading block when using
1200 --pipe. If it takes longer than dur to read a full block, use the
1201 partial block read so far.
1203 * Bug fixes and man page updates.
1205 News about GNU Parallel:
1207 * GNU Parallel course in Copenhagen
1208 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
1210 * GNU Parallel course in Århus
1211 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
1213 * GNU Parallel pour accélérer vos process sous Linux
1214 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
1216 * How to copy a file to multiple directories in Linux
1217 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
1219 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
1224 * GNU Parallel course in Copenhagen
1225 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
1227 * GNU Parallel course in Århus
1228 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
1230 * GNU Parallel is used in
1231 https://github.com/JeffersonLab/rfw_tsf_extractor
1233 * Bug fixes and man page updates.
1238 * GNU Parallel was presented at Driving IT. Slides:
1239 cloud.prosa.dk/s/drivingit
1241 * Restarting supervisord processes in parallel
1242 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
1244 * Using GNU Parallel to Create Archives Faster
1245 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
1247 * Bug fixes and man page updates.
1252 * --tee will use --output-error=warn-nopipe if supported by tee.
1254 * GNU Parallel will be presented at Driving IT 2019:
1255 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
1257 * UMN Duluth: Job parallelization with task arrays and GNU parallel
1258 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
1260 * Genome updater uses GNU Parallel
1261 https://github.com/pirovc/genome_updater
1263 * Using GNU-Parallel for bioinformatics
1264 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
1266 * Speeding up PostgreSQL ETL pipeline with the help of GODS
1267 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
1269 * Runing linux commands in parallel
1270 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
1272 * Research Computing University of Colorado Boulder contains an intro
1274 https://readthedocs.org/projects/curc/downloads/pdf/latest/
1276 * 如何使用Parallel在Shell中并行执行命令
1277 https://www.myfreax.com/gnu-parallel/
1279 * 如何测试 Amazon Elastic File System
1280 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
1282 * Bug fixes and man page updates.
1287 * --nice is now inherited by the nice level that GNU Parallel is
1288 started at. So 'nice -n10 parallel' will also cause remote jobs to
1289 be run at nice level 10.
1291 * --delay is now accurate to within 10 ms
1293 * GNU Parallel will be presented at Driving IT 2019:
1294 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
1296 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
1297 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
1299 * App Center Cloud Build Machines > Installed Software > Utilities
1300 https://docs.microsoft.com/en-us/appcenter/build/software
1302 * Curryfinger - SNI & Host header spoofing utility
1303 https://dualuse.io/blog/curryfinger/
1306 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
1308 * A meditation on analysing data with Perl in parallel using GNU Parallel
1309 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
1311 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
1312 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
1314 * RMACC Summit GNU Parallel
1315 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
1317 * Introducing Parallel into Shell
1318 https://petelawson.com/post/parallel-in-shell/
1320 * Linux Productivity Tools
1321 https://www.usenix.org/conference/lisa19/presentation/maheshwari
1323 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
1324 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
1326 * Bug fixes and man page updates.
1331 * GNU Parallel will be presented at Driving IT 2019:
1332 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
1334 * Linux Productivity Tools
1335 https://www.usenix.org/conference/lisa19/presentation/maheshwari
1337 * Improve your reconnaissance performance by using GNU Parallel
1338 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
1340 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
1341 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
1343 * Use POLYBAR to change WALLPAPER with GNU Parallel
1344 https://www.youtube.com/watch?v=rjYg-b_eiRU
1346 * Finding the Balance Between Speed & Accuracy During an Internet-wide
1348 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
1350 * GNU Parallel Ryugu released
1351 https://linuxreviews.org/GNU_Parallel_Ryugu_released
1353 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
1354 http://www.7daixie.com/2019071646302396.html
1356 * Bug fixes and man page updates.
1361 * {= uq; =} causes the replacement string to be unquoted. Example:
1362 parallel echo '{=uq;=}.jpg' ::: '*'
1364 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
1366 * Use -J ./profile to read a profile in current dir.
1368 * Speedup of startup by 40%: Find the parent shell differently on
1369 GNU/Linux, cache information about the CPU and which setpgrp method
1370 to use to make GNU Parallel start 40% faster.
1372 * $PARALLEL_SSHLOGIN can be used in the command line.
1374 * Occasionally sane: Simple usage of GNU parallel
1375 https://vfoley.xyz/parallel/
1377 * How to run multiple bash scripts in parallel
1378 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
1380 * Announcing Oracle Solaris 11.4 SRU10
1381 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
1383 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
1385 * Bug fixes and man page updates.
1390 * --shard can now take a column name and optionally a perl
1391 expression. Similar to --group-by and replacement strings.
1393 * Using AWK and R to parse 25tb
1394 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
1396 * Parallel and Visual testing with Behat
1397 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
1399 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
1401 * Bug fixes and man page updates.
1406 * --group-by groups lines depending on value of a column. The value
1409 * How to compress (bzip / gzip) a very large text quickly?
1410 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
1412 * Simple tutorial to install & use GNU Parallel
1413 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
1415 * Introducing Parallel into Shell
1416 https://petelawson.com/post/parallel-in-shell/
1418 * Bug fixes and man page updates.
1423 * Invitation to the 10 years anniversary next year.
1425 * Bug fixes and man page updates.
1430 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
1431 Parallel start no more jobs, but wait for running jobs to finish.
1433 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
1434 GNU Parallel kill all running jobs.
1436 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
1438 * High Throughput Computing on RMACC Summit and Beyond
1439 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
1441 * GNU Parallel Cheat Sheet by cpriest
1442 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
1444 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
1446 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
1448 * Bug fixes and man page updates.
1453 * --shard makes it possible to send input to a the same jobslot based
1454 on the value in one column of the input. It is similar to sharding
1457 * --shellquote --shellquote will shell quote the input twice.
1459 * GNU Parallel is available in Termux
1460 https://github.com/termux/termux-packages/tree/master/packages/parallel
1462 * Linux, command line & MetaCentrum
1463 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
1465 * How to supercharge your bash workflows with GNU parallel
1466 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
1468 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
1470 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
1472 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
1474 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
1476 * Come ridimensionare 10k foto con la riga di comando
1477 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
1479 * 并行处理 – Gnu Parallel:嵌套并行
1480 https://codeday.me/bug/20190122/552902.html
1482 * シェルスクリプトでコマンドを並列実行する方法
1483 https://www.kwbtblog.com/entry/2019/01/12/020423
1485 * Bug fixes and man page updates.
1490 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
1493 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
1495 * Supercomputer Workshop: Feb 1&7
1496 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
1498 * Bug fixes and man page updates.
1503 * Better /proc/cpuinfo parser.
1505 * Simpler job scheduling flow.
1507 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
1508 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
1510 * CONCOCT uses GNU Parallel
1511 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
1513 * If you use SLURM read
1514 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
1517 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
1519 * Bug fixes and man page updates.
1524 * Experimental simpler job flow control.
1526 * 時間がかかるコマンドを GNU parallel で 並列実行する
1527 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
1529 * Bug fixes and man page updates.
1534 * env_parallel.fish: --session support (alpha quality)
1536 * GNU Parallel was cited in: High-throughput sequencing of murine
1537 immunoglobulin heavy chain repertoires using single side unique
1538 molecular identifiers on an Ion Torrent PGM
1539 https://doi.org/10.18632/oncotarget.25493
1541 * GNU parallel in Japanese Wikipedia
1542 https://ja.wikipedia.org/wiki/GNU_parallel
1544 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
1545 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
1547 * Bug fixes and man page updates.
1552 * Minix is supported again.
1554 * Updated graph showing GNU Parallel's overhead per job for each
1555 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1557 * Intro to Computing at CARC includes introduction to GNU Parallel
1558 http://carc.unm.edu/education--training/workshops-and-seminars.html
1560 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
1562 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
1564 * Bug fixes and man page updates.
1569 * parset sets exit code.
1571 * How to install GNU Parallel
1572 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
1574 * Bug fixes and man page updates.
1579 * The quoting engine has been changed. Instead of using \-quoting GNU
1580 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
1581 improve compatibility with different locales. This is a big change
1582 causing this release to be alpha quality.
1584 * The CPU calculation has changed. By default GNU Parallel uses the
1585 number of CPU threads as the number of CPUs. This can be changed to
1586 the number of CPU cores or number of CPU sockets with
1587 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
1589 * The detected number of sockets, cores, and threads can be shown with
1590 --number-of-sockets, --number-of-cores, and --number-of-threads.
1592 * env_parallel now support mksh using env_parallel.mksh.
1594 * GNU Parallel is distributed as part of Snippy
1595 https://github.com/tseemann/snippy
1597 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
1598 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
1600 * Parallel download genomic data with GNU-Parallel
1601 https://digibio.blogspot.com/search/label/GNU-Parallel
1603 * Bug fixes and man page updates.
1608 * Deal better with multibyte chars by forcing LC_ALL=C.
1610 * GNU Parallel was introduced in Pincount Podcast:
1611 https://pincountpodcast.com/episodes/29.html
1613 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
1615 * How to run Linux commands simultaneously with GNU Parallel
1616 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
1618 * Easy parallelization with GNU parallel
1619 http://mpharrigan.com/2016/08/02/parallel.html
1621 * GNU Parallel for mutlithreaded tasks
1622 http://slhogle.github.io/2016/gnu-parallel/
1624 * A GNU Parallel Clustering Demo
1625 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
1627 * 使用 GNU Parallel 提高 Linux 命令行执行效率
1628 https://linux.cn/article-9718-1.html
1630 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
1631 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
1633 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
1635 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
1637 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
1639 * Bug fixes and man page updates.
1644 * --tty allows for more programs accessing /dev/tty in parallel. Some
1645 programs require tty access without using it.
1647 * env_parallel --session will record names in current environment in
1648 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
1649 and can work like --record-env but in a single session.
1651 * 35 day course: Linux shell scripting and text processing for big
1652 data https://comquest.in/training
1654 * How To Use Your Entire CPU In Bash With Parallel
1655 https://bash-prompt.net/guides/parallell-bash/
1657 * An easy way to run parallel jobs on Stampede2
1658 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
1660 * Get more done at the Linux command line with GNU Parallel
1661 https://opensource.com/article/18/5/gnu-parallel
1663 * Save Time with Modern Search Techniques
1664 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
1666 * GNU Parallel: haz más cosas simultáneamente en el terminal
1667 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
1669 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1670 https://www.slideshare.net/koji_matsuda/gnu-parallel
1672 * Bug fixes and man page updates.
1677 * --csv makes GNU Parallel parse the input sources as CSV. When used
1678 with --pipe it only passes full CSV-records.
1680 * Time in --bar is printed as 1d02h03m04s.
1682 * Optimization of --tee: It spawns a process less per value.
1684 * The GNU Parallel 2018 book is now available:
1685 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
1687 * Modern pentest tricks for faster, wider, greater engagement (15)
1688 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
1690 * Running many serial jobs efficiently
1691 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
1693 * GNU Parallel: как сохранить результаты нескольких команд для
1694 переменной? http://fliplinux.com/gnu-parallel-6.html
1696 * Running Multiple Commands in Parallel on a GNU Linux
1697 https://www.youtube.com/watch?v=sHpTywpb4_4
1699 * Klaatu covers the documentation of GNU parallel in episode 12x15
1700 http://gnuworldorder.info/
1702 * Bug fixes and man page updates.
1707 * niceload -p can now take multiple pids separated by comma
1709 * --timeout gives a warning when killing processes
1711 * --embed now uses the same code for all supported shells
1713 * --delay can now take arguments like 1h12m07s
1715 * Parallel. Straight from your command line
1716 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
1718 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
1719 suite Pipeline https://github.com/inpacdb/POAP
1721 * Pi Cluster Parallel Script First Fire
1722 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
1724 * How to Restore MySQL Logical Backup at Maximum Speed
1725 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
1727 * Bug fixes and man page updates.
1732 * --embed makes it possible to embed GNU parallel in a shell
1733 script. This is useful if you need to distribute your script to
1734 someone who does not want to install GNU parallel.
1736 * Parallelize Your Large Batches of Small Jobs
1737 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
1739 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
1740 http://gnuworldorder.info/
1742 * How to use parallel to speed up your work
1743 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
1745 * Transient compute clustering with GNU Parallel and sshfs
1746 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
1748 * Useful Examples of ffmpeg and GNU parallel on the command-line
1749 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
1751 * Data Science at the Command Line (Chapter 8.3)
1752 https://www.datascienceatthecommandline.com/
1754 * Bug fixes and man page updates.
1759 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
1761 * 15分钟神器gnu parallel 入门观止
1762 http://www.ezilin.com/2018/01/15gnu-parallel.html
1764 * How To Run Multiple Commands In Parallel on Linux
1765 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1767 * Bug fixes and man page updates.
1772 * env_parset for ash, dash, ksh, sh, zsh
1774 * Automatically create hostgroups if argument ends in @sshlogin
1776 * Tips for running jobs on your VM
1777 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1779 * Node-local scheduling
1780 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1782 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1784 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1786 * Using GNU Parallel
1787 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1789 * Bug fixes and man page updates.
1794 * Using GNU Parallel to speed up Google Cloud Infrastructure
1796 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1798 * What is gnu parallel
1799 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1801 * Parallel, Scripts, Clusters, & Easy Use
1802 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1804 * Bug fixes and man page updates.
1809 * Initial support for XDG Base Directory $XDG_* environment variables.
1811 * Validating half a million TIFF files. Part
1813 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1815 * Turing data science class: Cluster computing
1816 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1818 * Butlin:Unix for Bioinformatics - advanced tutorial
1819 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1821 * พยายามใช้ CPU ให้ครบทุก CORE
1822 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1824 * Examples on using GNU Parallel
1825 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1827 * Bug fixes and man page updates.
1832 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1833 spawn another job, 1 to not spawn another job, and 2 to kill the
1836 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1839 * Download all of humble bundle books in parallel
1840 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1842 * Bug fixes and man page updates.
1847 * --line-buffer no longer uses tempfiles. This is faster and makes it
1848 possible for a single process to output more data than there is free
1851 * Vote for GNU Parallel's community ads on
1852 http://meta.unix.stackexchange.com/a/4356/2972
1853 http://meta.askubuntu.com/a/16750/22307
1854 http://meta.serverfault.com/a/9040/45704
1856 * Edit images with GNU Parallel and ImageMagick
1857 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1859 * Running Bash Commands in Parallel
1860 https://dzone.com/articles/running-bash-commands-in-parallel-1
1862 * Today I Learned: GNU parallel, plate tectonics
1863 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1865 * GNU Parallel Tutorial
1866 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1868 * Validating half a million TIFF files
1869 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1871 * Blender and GNU Parallel
1872 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1874 * Quick Introduction to GNU Parallel
1875 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1877 * A simple distributed animation render example using GNU Parallel
1878 https://gitlab.com/skororu/scripts
1880 * Do stuff on things, in parallel
1881 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1883 * Bash And GNU Parallel NGS Bidniz
1884 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1886 * Using for loop vs Gnu parallel for BLAST
1887 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1889 * 并行rsync https://gxnotes.com/article/175866.html
1891 * Bug fixes and man page updates.
1896 * Vote for GNU Parallel's community ads on
1897 http://meta.unix.stackexchange.com/a/4356/2972
1898 http://meta.askubuntu.com/a/16750/22307
1899 http://meta.serverfault.com/a/9040/45704
1901 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1902 Search Engine for Massive System Log Data
1903 http://dl.acm.org/citation.cfm?id=3095788
1905 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1906 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1908 * How to play and play with thousands of digitized 78rpm records
1909 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1911 * 并行一个for循环 https://gxnotes.com/article/130363.html
1913 * RFC 8142: GeoJSON Text Sequences
1914 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1916 * Git auto fetch script I run every day
1917 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1919 * cores, cpus and threads
1920 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1922 * Bug fixes and man page updates.
1927 * The command line can now contain \257 (Macron) or UTF characters
1930 * Vote for GNU Parallel's community ads on
1931 http://meta.unix.stackexchange.com/a/4356/2972
1932 http://meta.askubuntu.com/a/16750/22307
1933 http://meta.serverfault.com/a/9040/45704
1935 * Graph for overhead for 1000 jobs has been updated. It remains
1936 steadily at 3.5 ms per job on a 1.7 GHz machine
1937 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1939 * GNU Parallel was cited in: The topology of the directed clique
1940 complex as a network invariant
1941 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1943 * GNU Parallel was cited in: Improving Optical Character Recognition
1944 of Finnish Historical Newspapers with a Combination of Fraktur &
1945 Antiqua Models and Image
1946 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1948 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1949 Tasks with Use of Small Supercomputers
1950 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1952 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1953 Component into a Commercial SMT Platform
1954 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1956 * Tips For Running Jobs On Your VM
1957 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1959 * Speed up ML model development with GNU Parallel
1960 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1962 * Parallelizing a Python Function for the Extremely Lazy
1963 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1966 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1968 * Bug fixes and man page updates.
1973 * --timeout can now use s=second,m=minute,h=hour,d=day.
1975 * --dr is now an alias for --dry-run.
1977 * Vote for GNU Parallel's community ads on
1978 http://meta.unix.stackexchange.com/a/4356/2972
1979 http://meta.askubuntu.com/a/16750/22307
1980 http://meta.serverfault.com/a/9040/45704
1982 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1983 Different Functional States
1984 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1986 * GNU Parallel was cited in: From genotype to phenotype: inferring
1987 relationships between microbial traits and genomic components
1988 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1990 * GNU Parallel was cited in: Designing fecal microbiota transplant
1991 trials that account for differences in donor stool efficacy
1992 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1994 * GNU Parallel was cited in: Assessing the predictability of
1995 anharmonic vibrational modes at the example of hydroxyl groups - ad
1996 hoc construction of localised modes and the influence of structural
1997 solute–solvent motifs
1998 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
2000 * GNU Parallel was cited in: Mapping Environmental Influences on
2002 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
2004 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
2005 Glass Transition in One Dimension
2006 https://arxiv.org/pdf/1704.02257.pdf
2008 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
2009 Multi-Domain Translation Environment
2010 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
2012 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
2013 moderate-resolution reflective solar bands against MODIS Aqua over
2015 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
2017 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
2018 Implementation And Application To Melanoma Classification
2019 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
2021 * GNU Parallel was cited in: Genome-scale detection of positive
2022 selection in 9 primates predicts human-virus evolutionary conflicts
2023 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
2025 * GNU Parallel is used in: Creates a speech dataset for deep learning
2026 https://github.com/jupiter126/Create_Speech_Dataset
2028 * GNU Parallel is used in: Parse and process the demixing secrets
2029 dataset (DSD100) https://github.com/faroit/dsdtools
2031 * First glance at the gnu parallel utility
2032 https://ibiscybernetics.com/blog/2017-04-05.html
2034 * Installing parallel from source
2035 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
2037 * How to run command or code in parallel in bash shell under Linux or
2039 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
2041 * Parallel Serial Jobs Using GNU Parallel
2042 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
2044 * GNU Parallel or How to list millions of S3 objects
2045 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
2047 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
2048 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
2050 * Bug fixes and man page updates.
2055 * --halt supports done in addition to success and fail.
2057 * parset will set variables in parallel in Bash.
2059 * Perl 5.6 on Irix is no longer supported.
2061 * Vote for GNU Parallel's community ads on
2062 http://meta.unix.stackexchange.com/a/4356/2972
2063 http://meta.askubuntu.com/a/16750/22307
2064 http://meta.serverfault.com/a/9040/45704
2066 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
2067 from transcriptomic data using MapReduce
2068 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
2070 * GNU Parallel was cited in: StrAuto: automation and parallelization
2071 of STRUCTURE analysis
2072 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
2074 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
2075 Temporal Bounds for Object Interactions in Egocentric Video
2076 https://128.84.21.199/pdf/1703.09026.pdf
2078 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
2080 * Using GNU Parallel
2081 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
2083 * Find and xargs and parallel
2084 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
2086 * Quick Introduction to GNU Parallel
2087 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
2089 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
2091 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
2093 * Bug fixes and man page updates.
2098 * --rpl can now take arguments by adding '(regexp)' in the replacement
2101 * Vote for GNU Parallel's community ads on
2102 http://meta.unix.stackexchange.com/a/4356/2972
2103 http://meta.askubuntu.com/a/16750/22307
2104 http://meta.serverfault.com/a/9040/45704
2106 * GNU Parallel was cited in: shmlast: An improved implementation of
2107 Conditional Reciprocal Best Hits with LAST and Python
2108 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
2110 * GNU Parallel was cited in: Prediction of relativistic electron flux
2111 in the Earth’s outer radiation belt at geostationary orbit by
2113 https://link.springer.com/article/10.1134/S0016793217010108
2115 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
2116 due to neutron-induced strikes on logic gates
2117 https://arxiv.org/pdf/1612.08239.pdf
2119 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
2120 Calculation of Hybrid Classical and Quantum Free Energies
2121 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
2123 * GNU Parallel was cited in: Learning string distance with smoothing
2124 for OCR spelling correction
2125 https://link.springer.com/article/10.1007/s11042-016-4185-5
2127 * GNU Parallel was cited in: The Breakdown of String Perturbation
2128 Theory for Many External Particles
2129 https://arxiv.org/pdf/1611.08003.pdf
2131 * GNU Parallel was cited in: Operations Research Applications in
2133 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
2135 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
2136 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
2138 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
2139 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
2141 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
2142 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
2144 * GNU parallel と SQL*Loader 組み合わせ実行例
2145 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
2147 * Bug fixes and man page updates.
2152 * env_parallel now supports /bin/sh, ash, dash.
2154 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
2155 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
2156 {} | wc -l' ::: {0..9}
2158 * If --results {replstr} ends in /: save in dir. Otherwise save as
2159 file. Example: parallel --results {} echo {} ::: a b c
2161 * Vote for GNU Parallel's community ads on
2162 http://meta.unix.stackexchange.com/a/4356/2972
2163 http://meta.askubuntu.com/a/16750/22307
2164 http://meta.serverfault.com/a/9040/45704
2166 * GNU Parallel was cited in: Low-delay forwarding with multiple
2167 candidates for VANETs using multi-criteria decision making
2168 http://ieeexplore.ieee.org/document/7835961/
2170 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
2171 Combines Grasping and Vision for Deep Learning
2172 https://arxiv.org/pdf/1702.02103.pdf
2174 * GNU Parallel was cited in: A Bayesian model selection approach for
2175 identifying differentially expressed transcripts from RNA sequencing
2176 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
2178 * GNU Parallel was cited in: The impact of copy number variation on
2179 gout, and the apple genome
2180 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
2182 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
2183 kinetics on unstructured meshes
2184 http://aip.scitation.org/doi/10.1063/1.4975167
2186 * GNU Parallel was cited in: Modeling prediction error improves power
2187 of transcriptome-wide association studies
2188 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
2190 * GNU Parallel was cited in: Proper experimental design requires
2191 randomization/balancing of molecular ecology experiments
2192 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
2194 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
2195 simulations of the magnetization reversal for ns-range clocked
2197 http://aip.scitation.org/doi/full/10.1063/1.4974021
2199 * GNU Parallel was cited in: The University of Edinburgh’s systems
2200 submission to the MT task at IWSLT
2201 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
2203 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
2205 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
2207 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
2209 * Training in GNU Parallel:
2210 https://www.carc.unm.edu/education-outreach/workshops--training/
2212 * Training in GNU Parallel:
2213 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
2215 * Batch Convert Images from PNG to JPEG
2216 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
2218 * Accelerating Oxford Nanopore Basecalling
2219 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
2221 * parallel и imagemagick в loop на bash
2222 https://www.linux.org.ru/forum/development/13190247
2224 * Bug fixes and man page updates.
2234 * sql now uses a temporary credentials file for MySQL to avoid
2237 * --sqlmaster and --sqlworker have been reworked.
2239 * --sqlworker only reads from the DBURL: any command and any arguments
2242 * --sqlmaster +DBURL will append different commands to the DBURL and
2243 not erase the table.
2245 * If --results contain a replacement string, no tree structure with
2246 args will be generated.
2248 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
2250 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
2251 Classification, and Measurement
2252 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
2254 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
2255 Social and Solitary Wild Bees Detects Associations with Eukaryote
2256 Parasites and New Viruses
2257 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
2259 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
2260 of Metric Temporal Logic
2261 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
2263 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
2265 * GNU Parallel as a queuing system:
2266 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
2268 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
2270 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
2271 and https://youtu.be/PlTuJx4VnGw?t=30m16s
2273 * Bug fixes and man page updates.
2278 * --results foo.csv will save output as a CSV-file. Can be directly
2279 imported into R or LibreCalc.
2281 * When using --pipepart a negative --block-size is not interpreted as
2282 a block size but as the number of blocks each jobslot should have.
2284 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
2285 DBURL is prepended with +.
2287 * GNU Parallel was cited in: A cloud-based workflow to quantify
2288 transcript-expression levels in public cancer compendia
2289 http://www.nature.com/articles/srep39259
2291 * GNU Parallel was cited in: Determination of crystal structures of
2292 proteins of unknown identity using a marathon molecular replacement
2293 procedure: Structure of Stenotrophomonas maltophilia
2294 phosphate-binding protein
2295 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
2297 * GNU Parallel was cited in: Large-scale benchmarking reveals false
2298 discoveries and count transformation sensitivity in 16S rRNA gene
2299 amplicon data analysis methods used in microbiome studies
2300 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
2302 * GNU Parallel was cited in: Decomposing Images into Layers via
2304 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
2306 * Transient compute clustering with GNU Parallel and sshfs
2307 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
2309 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
2310 http://www.tecmint.com/linux-image-conversion-tools/
2312 * All's Fair in Love and Distributed Storage
2313 http://cohesity.com/blog/alls-fair-love-distributed-storage/
2315 * How can I use GNU Parallel to run a lot of commands in parallel
2316 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
2318 * 정해영의 블로그 - JEONG Haeyoung's blog
2319 http://blog.genoglobe.com/2016/11/gnu-parallel.html
2321 * 在Linux下将PNG和JPG批量互转的四种方法
2322 http://os.51cto.com/art/201612/524182.htm
2324 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
2326 * Taco Bell Parallel Programming
2327 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
2329 * Bug fixes and man page updates.
2334 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
2337 * GNU Parallel was cited in: An improved implementation of Conditional
2338 Reciprocal Best Hits with LAST and Python
2339 https://pypi.python.org/pypi/shmlast/1.0.3
2341 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
2343 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
2345 * GNU/Parallel – Run multiple commands simultaneously
2346 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
2348 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
2349 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
2351 * Bug fixes and man page updates.
2356 * First command no longer gets stdin as it causes unpredictable issues.
2358 * GNU Parallel was cited in: Efficiently parallelized modeling of
2359 tightly focused, large bandwidth laser pulses
2360 https://arxiv.org/pdf/1609.08146v1.pdf
2362 * How to crunch lots of geodata in parallel
2363 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
2365 * GNU parallel is my new toaster
2366 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
2368 * Bug fixes and man page updates.
2373 * parcat - cat files or fifos in parallel
2375 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
2377 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
2379 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
2380 approach: IRMA, the iterative refinement meta-assembler
2381 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
2383 * Using GNU Parallel and ImageMagick for Conversions
2384 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2386 * Training in GNU Parallel
2387 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
2389 * Chown Ceph OSD data directory using GNU Parallel
2390 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
2392 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
2394 * dDocent: A guide to ddRAD sequencing
2395 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
2397 * SOFTWARE GNU Parallel
2398 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
2400 * Bug fixes and man page updates.
2405 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
2406 monitor progress of less than 100 simultaneous jobs.
2408 * --linebuffer now treats \r as line ending, too.
2410 * Perl changes forces use of floats to be given with leading zero, so
2413 * --xapply renamed to --link.
2415 * Support for pdksh will fade until someone packages it for Ubuntu 16.
2417 * GNU Parallel was cited in: Exome sequencing of geographically
2418 diverse barley landraces and wild relatives gives insights into
2419 environmental adaptation
2420 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
2422 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
2423 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
2425 * Easy parallelization with GNU parallel
2426 http://mpharrigan.com/2016/08/02/parallel.html
2428 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
2430 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
2433 http://www.manitou-mail.org/blog/2016/07/parallel-import/
2435 * Large file batch processing using NodeJs and GNU Parallel
2436 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
2438 * Bug fixes and man page updates.
2443 * env_parallel is now ready for wider testing. It is still beta
2446 * env_parallel is heavily modified for all shells and testing has been
2449 * Selectively choosing what to export using --env now works for
2450 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
2452 * --round-robin now gives more work to a job that processes faster
2453 instead of same amount to all jobs.
2455 * --pipepart works on block devices on GNU/Linux.
2457 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
2458 Introns for Phylogenetics from High-Throughput Sequencing Reads
2459 Using Target Enrichment
2460 http://www.bioone.org/doi/full/10.3732/apps.1600016
2462 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
2463 of STRUCTURE Analysis
2464 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
2466 * GNU Parallel was cited in: Tools and techniques for computational
2468 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
2470 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
2471 correlation analysis of genomic data
2472 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
2474 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
2475 Fine-tuning Query Expansion and Unification Strategies
2476 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
2478 * GNU Parallel was cited in: The Evolution and Fate of
2479 Super-Chandrasekhar Mass White Dwarf Merger Remnants
2480 http://arxiv.org/pdf/1606.02300.pdf
2482 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
2484 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
2486 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
2488 * The iconv slurp misfeature
2489 http://www.openfusion.net/linux/iconv_slurp_misfeature
2491 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
2493 * Bug fixes and man page updates.
2498 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
2499 is not in your path on remote machines.
2501 * If --block is left out, --pipepart will use a block size that will
2502 result in 10 jobs per jobslot.
2504 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
2505 2016-06-06 after 5 months.
2507 * Vote for GNU Parallel's community ad on
2508 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2510 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
2511 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
2512 Switzerland http://www.nature.com/articles/srep27580
2514 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
2515 an Automated Realtime Flare Forecast
2516 https://arxiv.org/pdf/1606.01587.pdf
2518 * Unix parallel: Populating all the USB sticks
2519 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
2521 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
2523 * Combining a large number of VCF files
2524 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
2526 * Useful Scraping Techniques
2527 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
2529 * Tools of the trade
2530 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
2532 * Armslist scraper https://github.com/nprapps/armslist-scraper/
2534 * Bug fixes and man page updates.
2539 * niceload --net pauses the program if the internet connection is
2542 * Vote for GNU Parallel's community ad on
2543 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2545 * Updated speed comparison between versions
2546 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
2548 * GNU Parallel was cited in: Improving computation efficiency by
2549 parallel programming
2550 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
2552 * GNU Parallel was cited in: A supernova feedback implementation for
2553 the astrophysical simulation software Arepo
2554 https://arxiv.org/abs/1604.06071
2556 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
2557 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
2559 * GNU Parallel was cited in: Host-pathogen co-evolution and the
2560 emergence of broadly neutralizing antibodies in chronic infections
2561 https://arxiv.org/abs/1512.06296
2563 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
2564 Evolutionary Processes: a mitochondrial DNA study
2565 https://otago.ourarchive.ac.nz/handle/10523/6340
2567 * GNU Parallel was cited in: The effect of domain modeling on
2568 efficiency of planning: Lessons from the Nomystery domain
2569 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
2571 * GNU Parallel was cited in: Oops, my tests broke the build: An
2572 analysis of Travis CI builds with GitHub
2573 https://peerj.com/preprints/1984/
2575 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
2576 Distinct Set of Genomic Properties Over 40 Million Years of
2577 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
2579 * GNU Parallel was cited in: An Empirical Comparison of Neural
2580 Architectures for Reinforcement Learning in Partially Observable
2582 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
2584 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
2585 Management in Requester-wins Hardware Transactional Memory
2586 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
2588 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
2589 Mutation-Induced Stability Changes with Feature-Based Multiple
2591 http://www.sciencedirect.com/science/article/pii/S0022283616000310
2593 * GNU Parallel was cited in: A new orthology assessment method for
2594 phylogenomic data: Unrooted Phylogenetic Orthology
2595 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
2596 https://github.com/ballesterus/UPhO
2598 * GNU Parallel was cited in: Distinctive Interest Point Selection for
2599 Efficient Near-duplicate Image Retrieval
2600 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
2602 * GNU Parallel was cited in: The Evolution of C Programming Practices:
2603 A Study of the Unix Operating System 1973–2015
2604 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
2605 thumbnail graphs I have ever seen scattered all over the text)
2607 * GNU Parallel was cited in: Data processing pipeline for serial
2608 femtosecond crystallography at SACLA
2609 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
2611 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
2612 Dynamics http://arxiv.org/pdf/1512.01460.pdf
2614 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
2616 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
2618 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
2619 Characterization of IPv6 Network Security Policy
2620 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
2622 * GNU Parallel was cited in: Comprehensive Annotation of the
2623 Parastagonospora nodorum Reference Genome Using Next-Generation
2624 Genomics, Transcriptomics and Proteogenomics
2625 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
2627 * GNU Parallel was cited in: How attention influences perceptual
2628 decision making: Single-trial EEG correlates of drift-diffusion
2629 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
2631 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
2632 Using High-Throughput Sequencing Reads
2633 http://repository.upenn.edu/edissertations/1460/
2635 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
2636 Processing with Associative Transducers
2637 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
2639 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
2640 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
2642 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
2643 Morphological Data Partitions and Lost Branches in the Fossil Tree
2644 of Life http://opus.bath.ac.uk/43955/
2646 * GNU Parallel was cited in: Shannon: An Information-Optimal de
2647 NovoRNA-Seq Assembler
2648 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
2650 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
2651 Estimation for Coastal Ocean Modeling
2652 https://repositories.lib.utexas.edu/handle/2152/32435
2654 * GNU Parallel was cited in: Computational Design of DNA-Binding
2656 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
2658 * GNU Parallel was cited in: Reference genotype and exome data from an
2659 Australian Aboriginal population for health-based research
2660 http://www.nature.com/articles/sdata201623
2662 * GNU Parallel was cited in: Do aye-ayes echolocate?
2663 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
2665 * GNU Parallel was cited in: Functional enrichments of disease
2666 variants across thousands of independent loci in eight diseases
2667 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
2669 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
2670 microbial trait analyzer
2671 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
2673 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
2674 of Ground-Based Doppler Radar Observations Using MapReduce
2676 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
2678 * NCBI blast tutorial
2679 https://github.com/enormandeau/ncbi_blast_tutorial
2681 * Distributed Preservation Made Simple
2682 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
2684 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
2686 * Bug fixes and man page updates.
2691 * :::+ and ::::+ work like ::: and :::: but links this input source to
2692 the previous input source in a --xapply fashion. Contrary to
2693 --xapply values do not wrap: The shortest input source determines
2696 * --line-buffer --keep-order now outputs continously from the oldest
2697 job still running. This is more what you would expect than the
2698 earlier behaviour where --keep-order had no effect with
2701 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
2702 arrays. In csh/tcsh it now supports variables, aliases, and arrays
2703 with no special chars. In pdksh it supports aliases, functions,
2704 variables, and arrays.
2706 * Function exporting on Mac OS X works around old Bash version.
2708 * Better CPU detection on OpenIndiana.
2710 * GNU Parallel was cited in: Automatic Methods for Assisted
2712 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
2714 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
2715 for Natural SUSY with a R-Sneutrino LSP
2716 http://arxiv.org/pdf/1603.06130.pdf
2718 * GNU Parallel was cited in: An Operational Radiometric Landsat
2719 Preprocessing Framework for Large-Area Time Series Applications
2720 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
2722 * A basic demo of how GNU Parallel can speed up execution of commands
2723 https://www.youtube.com/watch?v=kl8LO2jcvMc
2725 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
2727 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
2729 * Parallel Processing with Catmandu
2730 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
2733 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
2735 * Bug fixes and man page updates.
2740 * env_parallel is a function that exports the environment (functions,
2741 aliases, variables, and arrays) to GNU Parallel. Run 'man
2742 env_parallel' for details.
2744 * niceload --prg now searches for substrings if no process with the
2747 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
2748 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
2750 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
2751 Parallel Computations for LargeScale High-Fidelity Database to
2752 Design Aerospace Vehicles
2753 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
2755 * Using ‘Parallel’ in Unix
2756 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
2758 * JPEG Squish uses (and co-distributes) GNU Parallel:
2759 http://dantidswell.co.uk/jpeg-squish/
2761 * Bug fixes and man page updates.
2766 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2767 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2768 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2769 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2771 * Daily Quick Tip: parallel
2772 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2774 * Downloading a list of URLs
2775 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2777 * Using GNU Parallel and ImageMagick for Conversions
2778 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2780 * Running bash commands in parallel
2781 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2783 * parallel processing in PDAL
2784 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2786 * A Million Text Files And A Single Laptop
2787 http://randyzwitch.com/gnu-parallel-medium-data/
2789 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2790 http://www.slideshare.net/koji_matsuda/gnu-parallel
2792 * Bug fixes and man page updates.
2797 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2798 run any jobs so it requires at least one --sqlworker. DBURL must
2801 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2804 * --sqlandworker is a shorthand for --sql and --sqlworker.
2806 * --sqlworker requires the output of a single job to fit in memory.
2808 * --results now also saves a file called 'seq' containing the sequence
2811 * If $PARALLEL_ENV is a file, then that file will be read into
2814 * man parallel_tutorial has been given an overhaul.
2816 * --workdir now accepts replacementstrings.
2818 * GNU Parallel was cited in: Possum - A Framework for
2819 Three-Dimensional Reconstruction of Brain Images from Serial
2820 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2822 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2823 structural MRI features for classification of Mild Cognitive
2824 Impairment and Alzheimer's Disease
2825 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2827 * GNU Parallel was cited in: The Effect of Domain Modeling on
2828 Performance of Planning Algorithms
2829 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2831 * Plotting time tables for jobs run by GNU Parallel
2832 https://github.com/ziotom78/plot_joblog
2834 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2835 analyze the Ebola Genome https://www.biostars.org/p/119397
2837 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2839 * Distributed Log Search Using GNU Parallel
2840 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2842 * Bug fixes and man page updates.
2847 * --transfer is now an alias for --transferfile {}.
2849 * --transferfile works like --transfer, but takes an argument like
2850 --return. This makes it possible to combine transferring files
2851 with multiple input sources: parallel -S server --tf {1} wc {2}
2852 {1} ::: * ::: -l -w -c
2854 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2855 $_=total_jobs() =}' ::: {1..50}
2857 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2859 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2861 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2862 from SDO/HMI Vector Field Inversions
2863 http://arxiv.org/pdf/1511.06500.pdf
2865 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2867 * 使用 GNU parallel 來平行運算
2868 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2870 * Bug fixes and man page updates.
2875 * GNU Parallel packaged for CERN CentOS:
2876 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2878 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2879 I. Design and First-Quarter Discoveries
2880 http://arxiv.org/pdf/1511.02895.pdf
2882 * GNU Parallel was cited in: Contrasting genetic architectures of
2883 schizophrenia and other complex diseases using fast
2884 variance-components analysis
2885 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2887 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2888 using Support Vector Machines
2889 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2891 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2892 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2893 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2895 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2896 Logic Circuits due to Single-Event Transients
2897 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2899 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2900 Using Rhythm Metrics and Neural Networks
2901 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2903 * GNU Parallel was cited in: Stride Search: a general algorithm for
2904 storm detection in high resolution climate data
2905 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2907 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2908 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2910 * GNU Parallel was cited in: Structure and evolutionary history of a
2911 large family of NLR proteins in the zebrafish
2912 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2914 * GNU Parallel was cited in: Evolution of movement strategies under
2915 competitive interactions
2916 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2918 * Automating large numbers of tasks
2919 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2921 * Max out your IOPs with GNU Parallel
2922 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2924 * Bug fixes and man page updates.
2929 * --plus makes it possible to use {##} as a shorthand for
2930 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2931 of jobs to run in total.
2933 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2936 * GNU Parallel is now mostly compatible with lsh
2937 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2938 autossh (http://www.harding.motd.ca/autossh/).
2940 * --workdir ... now also works when run locally.
2942 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2943 regular graph http://arxiv.org/pdf/1509.05933.pdf
2945 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2947 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2949 * GNU Parallel is used in TraitAR:
2950 https://testpypi.python.org/pypi/traitar/0.1.4
2952 * A parallel and fast way to download multiple files
2953 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2955 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2956 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2958 * Bug fixes and man page updates.
2963 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2964 Empirical Bayes Framework
2965 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2967 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2968 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2970 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2971 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2972 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2974 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2975 Résumés of Selected Candidates for a Job?
2976 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2978 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2979 tension during morphogenesis of the Drosophila pupal wing
2980 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2982 * Third-party selling GNU Parallel T-shirts
2983 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2985 * Joys of gnu parallel
2986 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2988 * Crop and resize images with bash and ImageMagick
2989 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2991 * Three Ways to Script Processes in Parallel
2992 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2994 * What It Looks Like to Process 3.5 Million Books
2995 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2997 * Bug fixes and man page updates.
3002 * If $job->skip() is called in {= =} the job will not be run.
3004 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
3005 $_="j" =}' ::: 1 2 3 ::: 4 5 6
3007 * Version of GNU Parallel that uses PostgreSQL as backend
3008 https://github.com/stephen-fralich/parallel-sql/
3010 * SpeedSeq: ultra-fast personal genome analysis and interpretation
3011 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
3013 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
3015 * Who actually reads the code?
3016 http://www.fsf.org/blogs/community/who-actually-reads-the-code
3018 * Introduction to GNU Parallel
3019 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
3021 * ¿Alguien se lee el código?
3022 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
3024 * ¿Quién se lee el código fuente?
3025 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
3027 * Distribution des traitements avec GNU Parallel
3028 http://blog.inovia-conseil.fr/?p=226#4
3030 * Эксперимент по проверке, читают ли код открытых проектов
3031 http://www.opennet.ru/opennews/art.shtml?num=42718
3033 * 多核心主機搭配 GNU parallel
3034 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
3036 * Bug fixes and man page updates.
3041 * If a record fits in a block, --block only reads upto the size of
3042 --block. If not: --block reads a full --block more.
3044 * Due to widely spread distributions still using --tollef even after a
3045 year of being retired following a year of being obsolete, --tollef
3046 now gives an error unless used with --gnu.
3048 * --nice now uses a perl wrapper instead of the nice command.
3050 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
3053 * A parser for GNU Parallel --joblog files:
3054 https://github.com/harryjubb/joblog
3056 * GNU Parallel was cited in: Dynamical formation & scattering of
3057 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
3058 collisions http://arxiv.org/pdf/1507.03593.pdf
3060 * GNU Parallel was cited in: A Fast Compiler for NetKAT
3061 http://arxiv.org/pdf/1506.06378.pdf
3063 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
3065 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
3067 * GNU Parallel was used in: Somatic mutation calling from the matched
3068 tumor-normal exome-sequencing
3069 http://fafner.meb.ki.se/biostatwiki/somac/
3071 * Parallel Processing from the Command Line
3072 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
3074 * Using GNU Parallel to speed up network operations
3075 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
3077 * Crawl faster with "parallel" - but how fast?
3078 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
3080 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
3081 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
3083 * Bug fixes and man page updates.
3088 * --halt has been rewritten completely. You can now combine
3089 percentages with success or fail. See the man page.
3091 * Exit values 102..254 have been removed. 101 means more than 100 jobs
3094 * Killing through --timeout, --memfree, or --halt is now done as a
3097 * --termseq determines which signals are sent when a job is killed.
3099 * An empty argument would previously cause no string to be
3100 inserted. This is now changed to '' being inserted, thus prepending
3101 a space to the output of: parallel echo {} b ::: ''
3103 * $PARALLEL_ENV can now be set to an environment prepending the
3104 command. Used in env_parallel as mentioned in the manpage.
3106 * --retry-failed will retry all failed jobs in a joblog. It will
3107 ignore any command given.
3109 * --ssh and $PARALLEL_SSH can be used to set the command used for
3110 ssh. The command is assumed to behave the same way as ssh.
3112 * --fifo now works in csh, too.
3114 * Q(...) can be used in {= =} to shell quote a string.
3116 * GNU Parallel was cited in: DockBench: An Integrated Informatic
3117 Platform Bridging the Gap between the Robust Validation of Docking
3118 Protocols and Virtual Screening Simulations
3119 http://www.mdpi.com/1420-3049/20/6/9977
3121 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
3123 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
3125 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
3126 scattering and resonance calculations
3127 http://arxiv.org/pdf/1505.07691.pdf
3129 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
3130 framework for analyzing massively parallel DNA sequencing data
3131 http://link.springer.com/article/10.1186/s13742-015-0058-5
3133 * GNU Parallel was cited in: A composite genome approach to identify
3134 phylogenetically informative data from next-generation sequencing
3135 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
3137 * GNU Parallel is used in: taxator-tk
3138 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
3140 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
3142 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
3144 * GNU Parallel is used in: A Fingerprint Identification System
3145 https://curve.carleton.ca/system/files/theses/28733.pdf
3147 * Job ad asking for GNU Parallel experience:
3148 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
3150 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
3152 * Bug fixes and man page updates.
3157 * Security: The security issue for --sshlogin + --fifo/--cat has been
3158 fixed. Thereby all issues with
3159 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
3162 * Security: After further security analysis the issue fixed in
3163 20150422 also fixed the problem for --tmux.
3165 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
3166 coordinated transcriptional regulation in gene expression
3168 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
3170 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
3171 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
3172 Metagenomics and RNA-seq
3173 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
3175 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
3176 of H1N1 influenza provides insight into the mechanism of viral
3177 transcription initiation
3178 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
3180 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
3181 long and error-free DNA reads
3182 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
3184 * GNU Parallel was used (unfortunately with wrong citation) in:
3185 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
3186 for CO2 surface flux inversions
3187 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
3189 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
3190 https://bitbucket.org/srp33/gsoa
3192 * A Quick and Neat :) Orchestrator using GNU Parallel
3193 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
3195 * Execute commands on multiple computers using GNU Parallel (setting
3196 up a cluster on the cheap)
3197 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
3199 * Functions and GNU parallel for effective cluster load management
3200 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
3202 * Use parallel processing to save time importing databases
3203 http://drupalsun.com/node/41854
3205 * Run multiple ssh commands in parallel with GNU Parallel
3206 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
3208 * Importing huge databases faster
3209 https://www.lullabot.com/blog/article/importing-huge-databases-faster
3211 * Parallel? Gnu parallel! https://debian.pro/1834
3213 * Bug fixes and man page updates.
3218 New in this release:
3220 * Security fix. An attacker on the local system could make you
3221 overwrite one of your own files with a single byte. The problem
3222 exist when you use --compress or --tmux or --pipe or --cat or
3223 --fifo. The attacker must figure out the randomly chosen file name
3224 and create a symlink within a time window of 15 ms.
3226 * --shuf will generate all jobs, and shuffle them before running
3227 them. This is useful to get a quick preview of the results before
3228 running the full batch.
3230 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
3232 * GNU Parallel was cited in: Scaling Machine Learning for Target
3233 Prediction in Drug Discovery using Apache Spark
3234 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
3236 * GNU Parallel was cited in: Bayesian inference of protein structure
3237 from chemical shift data https://peerj.com/articles/861/
3239 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
3240 Large-Scale Digital Libraries: Estimating Volume Time Range
3241 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
3243 * GNU Parallel was cited in: Experimental study on the Wind Farm
3244 Substation Cable Installation Problem
3245 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
3247 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
3249 * GNU Parallel was used in: https://github.com/exascience/elprep
3251 * GNU Parallel was used in:
3252 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
3254 * GNU Parallel was used in:
3255 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
3257 * GNU Parallel was used in: Rapid haploid SNP calling
3258 https://github.com/tseemann/snippy
3260 * Pictures and Metadata
3261 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
3263 * Task automation with bash and parallel
3264 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
3266 * How To: Speed Up File Transfers in Linux using RSync with GNU
3268 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
3270 * Mirroring a Git Repository
3271 https://avacariu.me/articles/mirroring-a-git-repository.html
3273 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
3274 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
3277 http://www.zhihu.com/question/29257300
3279 * Bug fixes and man page updates.
3284 New in this release:
3286 * --number-of-cores respects 'taskset' on GNU/Linux.
3288 * --joblog --pipe gives the data send and received in the log.
3290 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
3291 few bugs was fixed to support >2 GB records. It works, but is rather
3294 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
3295 genomic sequence data with the GATK
3296 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
3298 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
3299 Improving metagenomic analysis with high performance classification
3300 and wide taxonomic attachment
3301 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
3303 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
3304 shaped by declining effective population size
3305 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
3307 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
3308 ionization in the warm disk surface
3309 http://arxiv.org/pdf/1503.02659.pdf
3311 * GNU Parallel was cited in: De novo assembly and annotation of the
3312 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
3313 from raw genomic reads and comparative analysis with the yellow
3314 fever mosquito (Aedes aegypti)
3315 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
3317 * GNU Parallel was cited in: A General Approach to Network
3318 Configuration Analysis
3319 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
3321 * GNU Parallel was cited in: Scrimer: designing primers from
3323 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
3325 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
3326 Inspecting Potentially Malicious Traffic in the Cloud
3327 http://sacko.uk/pdf/2015.1.pdf
3329 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
3331 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
3333 * GNU Parallel was used in:
3334 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
3336 * GNU Parallel was used in: https://github.com/martymac/fpart
3338 * GNU Parallel was used in:
3339 https://github.com/hoytak/diabetic-retinopathy-code
3341 * GNU Parallel was used in:
3342 https://github.com/mehmattski/HybSeqPipeline
3344 * GNU Parallel was used in:
3345 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
3347 * Using GNU Parallel on a Raspberry Pi cluster:
3348 http://www.dcglug.org.uk/cluster-progress/
3350 * An introduction to vector tiling and map reduce in postgis:
3351 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
3353 * Running scripts in parallel with GNU Parallel:
3354 http://code.jasonbhill.com/2015/03/
3356 * Mahout: Parallelising the creation of DecisionTrees:
3357 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
3359 * High-Performance Scientific Computing: Running serial jobs in
3361 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
3363 * Parallel cardinality on your laptop
3364 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
3366 * Experiments about a better locate using grep
3367 http://a3nm.net/blog/better_locate.html
3369 * Homework with GNU Parallel:
3370 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
3372 * Parallel - Jobs in Skripten parallelisieren:
3373 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
3375 * GNU Parallel, czyli 100% użycia procesora
3376 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
3378 * Bug fixes and man page updates.
3383 * --tmux has gotten a major overhaul.
3385 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
3386 Performance Stream Parallel Processing
3387 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
3389 * GNU Parallel was cited in: Quantifying properties of hot and dense
3390 QCD matter through systematic model-to-data comparison
3391 http://arxiv.org/pdf/1502.00339.pdf
3393 * GNU Parallel was cited in: Towards Collaborative Exploration and
3394 Analysis of Big Data from Mars: A Noachis Terra Case Study
3395 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
3397 * GNU Parallel was used (unfortunately with wrong citation) in:
3398 Performance and Scaling Comparison Study of RDBMS and NoSQL
3400 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
3402 * GNU Parallel was used (unfortunately without citation) in: Parallel
3403 Implementation of Big Data Pre-Processing Algorithms for Sentiment
3404 Analysis of Social Networking Data
3405 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
3407 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
3408 Ultra-fast personal genome analysis and interpretation
3409 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
3411 * Zip Folders with GNU Parallel
3412 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
3414 * Using GNU Parallel with Freesurfer
3415 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
3417 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
3419 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
3421 * Bug fixes and man page updates.
3426 * Remote jobs now send stderr (standard error) to stderr (standard
3427 error) instead of stdout (standard output).
3429 * Remote execution command is now packed using base64 encoded
3430 bzip2. This means that big environments (app. 100 KB) can be
3431 transferred. This change makes remote execution alpha quality.
3433 * --semaphoretimeout now takes a negative value. This means give up if
3434 the semaphore is not gotten within the timeout.
3436 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
3439 * --no-keep-order will reverse --keep-order.
3441 * Bash's second fix of shellshock caused --env to break again when
3442 exporting functions. This has been fixed again.
3444 * A semibig refactoring of big functions. All non-trivial functions
3445 are now less than 100 lines. The refactoring makes this release beta
3448 * A description of the design decisions for GNU Parallel can be found
3449 in 'man parallel_design'.
3451 * A bug fix in replacement strings caused rewrite of the replacement
3452 function. This makes use of replacement strings alpha quality.
3454 * GNU Parallel was cited in: Improving Energy and Performance with
3455 Spintronics Caches in Multicore Systems
3456 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
3458 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
3459 http://dl.acm.org/citation.cfm?id=2691137
3461 * GNU Parallel was cited in: Distinguishing cause from effect using
3462 observational data: methods and benchmarks
3463 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
3465 * GNU Parallel was cited in: Data Science at the Command Line
3466 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
3468 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
3469 Caused by Excess Heterozygosity in Plant Recombinant Inbred
3470 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
3472 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
3473 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
3475 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
3476 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
3478 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
3479 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
3481 * GNU Parallel was cited in: Frameshift alignment: statistics and
3482 post-genomic applications
3483 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
3485 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
3486 Experiments for Identifying Recommender Differences
3487 http://elehack.net/research/thesis/mde-thesis.pdf
3489 * GNU Parallel was cited in: Speaker Environment Classification Using
3490 Rhythm Metrics in Levantine Arabic Dialect
3491 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
3493 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
3494 http://arxiv.org/pdf/1501.02155.pdf
3496 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
3497 Coherence Protocols for STT-MRAM-based caches
3498 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
3500 * GNU Parallel was cited in: Using Trusted Platform Module for
3501 securing virtual environment access in Cloud
3502 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
3504 * GNU Parallel was cited in: Weakly Supervised Learning for
3505 Compositional Sentiment Recognition
3506 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
3508 * GNU Parallel was cited in: Agility and Performance in Elastic
3509 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
3511 * GNU Parallel was used (unfortunately without citation) in: Large
3512 Scale Author Name Disambiguation in Digital Libraries
3513 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
3515 * GNU Parallel is used in BEDOPS:
3516 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
3518 * Job ad asking for GNU Parallel skills:
3519 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
3521 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
3523 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
3525 * Multithreaded Encryption and Compression
3526 http://www.krazyworks.com/multithreaded-encryption-and-compression/
3528 * GNU Parallel on OSX and Linux
3529 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
3531 * How to build gnu parallel from source on Ubuntu PC?
3532 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
3534 * GNU parallel for openaddr-process-one
3535 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
3537 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
3539 * Software Development Tooling
3540 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
3542 * コマンドを並列に実行するGNU parallelがとても便利
3543 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
3545 * Bug fixes and man page updates.
3550 * Remote systems can be divided into hostgroups (e.g. web and db) by
3551 prepending '@groupname/' to the sshlogin. Multiple groups can be
3552 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
3555 * Remote execution can be restricted to servers that are part of one
3556 or more groups by '@groupname' as an sshlogin. Multiple groups can
3557 be given by separating groups with '+'. E.g. -S @web or -S @db+web
3559 * With --hostgroup you can restrict arguments to certain hostgroups by
3560 appending '@groupname' to the argument. Multiple groups can be
3561 given by separating groups with '+'. E.g. my_web_arg@web
3562 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
3563 developing a prototype for this.
3565 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
3566 Massively Parallel Sequencing Data Analysis using Hadoop
3567 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
3569 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
3570 the Histological Quantification of Whole Slide Images
3571 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
3573 * GNU Parallel was cited in: Exploring a multiprocessor design space
3574 to analyze the impact of using STT-RAM in the memory hierarchy
3575 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
3577 * Command-Line OCR with Tesseract on Mac OS X
3578 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
3580 * Bug fixes and man page updates.
3585 * --env was changed to deal with Bash's new way of exporting a function.
3587 * GNU Parallel was cited in: Exclusion of cosmic rays in
3588 protoplanetary disks. II. Chemical gradients and observational
3589 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
3591 * GNU Parallel was cited in: Application of Machine Learning to
3592 Algorithm Selection for TSP
3593 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
3595 * GNU Parallel was cited in: Performance Models for LTE-Advanced
3597 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
3599 * GNU Parallel was used (unfortunately without citation) in: De Novo
3600 Insertions and Deletions of Predominantly Paternal Origin Are
3601 Associated with Autism Spectrum Disorder
3602 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
3604 * GNU Parallel was determined 'popular' by Statistical Analysis of
3605 Popular Open Source Software Projects and Their Communities
3606 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
3608 * GNU Parallel is demonstrated in: Data Science at the Command Line:
3609 Facing the Future with Time-Tested Tools
3611 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
3612 http://www.openfusion.net/talks/pwp/#24
3614 * GNU Parallel and how to get started with it
3615 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
3617 * Behat/Selenium/Parallel
3618 http://jaffamonkey.com/behat-selenium-parallel/
3620 * Comparing Golang, Scala, Elixir and Ruby for ETL
3621 http://www.dimroc.com/2014/09/29/etl-language-showdown/
3623 * Assemble a list of which of these hosts are up or down
3624 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
3626 * Running commands on many nodes simultaneously
3627 http://opsfun.wordpress.com/2014/03/31/19/
3629 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
3630 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
3632 * Bug fixes and man page updates.
3637 * If the file given as --sshloginfile is changed it will be re-read
3638 when a job finishes though at most once per second. This makes it
3639 possible to add and remove hosts while running.
3641 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
3643 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
3645 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
3646 http://youtu.be/UtXlr19xTh8?t=2h5m0s
3648 * Pleiades Plus uses GNU Parallel
3649 https://github.com/ryanfb/pleiades-plus
3651 * Imagemagick and GNU Parallel
3652 http://deepdish.io/2014/09/15/gnu-parallel/
3654 * GNU Parallel (Sebuah Uji Coba)
3655 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
3657 * GNU Parallel: 并行执行Linux命令
3658 http://blog.csdn.net/xzz_hust/article/details/39183837
3663 * GNU Parallel now uses the same shell it was started from as the
3664 command shell for local jobs. So if GNU Parallel is started from
3665 tcsh it will use tcsh as its shell even if the login $SHELL is
3666 different. For remote jobs the login $SHELL will be used.
3668 * The whole current environment in bash can be copied by using a shell
3669 wrapper function (Search manual for env_parallel).
3671 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
3672 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
3673 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
3674 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
3676 * GNU Parallel now deals correctly with the combination
3677 rsync-3.1.X-client and rsync-2.5.7-server
3679 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
3680 Information Extraction
3681 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
3683 * Comparison of the speed of different GNU Parallel versions:
3684 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
3686 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
3687 the Command Line http://www.oreilly.com/pub/e/3115
3689 * Distributed processing with GNU parallel
3690 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
3692 * A Peek into GNU Parallel
3693 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
3695 * Сборка GNU parallel для CentOS/RHEL
3696 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
3698 * Bug fixes and man page updates.
3703 * {= perl expression =} can be used as replacement string. The
3704 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
3705 the string. This makes replacement strings extremely flexible.
3707 * Positional perl expressions (similar to {2}) are given as {=2 perl
3708 expression=} where 2 is the position.
3710 * One small backwards incompatibility: {1}_{2} will replace {2} with
3711 the empty string if there is only one argument. Previously {2} would
3712 have been left untouched.
3714 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
3715 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
3717 * The parenthesis around {= perl expression =} can be changed with
3720 * --tmux will direct the output to a tmux session instead of
3721 files. Each running jobs will be in its own window.
3723 * --halt 10% will stop spawning new jobs if 10% failed so far.
3725 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
3726 of low depth whole genome data using multidimensional scaling (MDS)
3727 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
3729 * GNU Parallel was cited in: Molecular ferroelectric contributions to
3730 anomalous hysteresis in hybrid perovskite solar cells
3731 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
3733 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
3734 design of C4 grass bioenergy crops
3735 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
3737 * GNU Parallel was cited in: Web-scale Content Reuse Detection
3738 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
3740 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
3741 GNU Parallel: Data Science at the Command Line
3742 http://www.oreilly.com/pub/e/3115
3744 * GNU Parallel all the things!
3745 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
3747 * Shell command composition and dispatch
3748 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
3750 * Parallelising plink (or anything else) the easy way
3751 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
3753 * Easy and cheap cluster building on AWS
3754 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
3756 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
3757 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
3759 * [原] Ubuntu 下使用 parallel 命令的注意事项
3760 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3762 * 简单的并行, 可使用GNU parallel
3763 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3765 * Bug fixes and man page updates.
3770 * --shebang and --shebang-wrap now works on FreeBSD.
3772 * --pipepart works with --header, --regexp, --cat and --fifo.
3774 * ./configure --disable-documentation will not build documentation.
3776 * {%} works as job slot.
3778 * GNU Parallel was cited in: Energy Efficient, High-speed
3779 Communication in WSNs
3780 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3782 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3783 hysteresis in hybrid perovskite solar cells
3784 http://arxiv.org/pdf/1405.5810.pdf
3786 * Processes Paralleling to Speed up Computing and Tasks Execution in
3788 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3790 * Moving / Copying lots of s3 files quickly using gnu parallel
3791 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3793 * Speeding up grep log queries with GNU Parallel
3794 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3796 * Ubuntu - Gnu parallel - It's awesome
3797 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3799 * Export quicklooks with vector overlay using TuiView
3800 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3802 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3804 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3806 * Bug fixes and man page updates.
3811 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3813 * {%} introduced as job slot replacement string. It has known bugs.
3815 * --slotreplace changes slot replacement string.
3817 * GNU Parallel officially in Solaris 11.2beta
3818 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3820 * GNU Parallel was cited in: A Comparison of Antenna Placement
3821 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3823 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3824 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3826 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3828 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3830 * Convert FLAC to MP3 with GNU parallel
3831 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3833 * JD Edwards Business Function Documentation
3834 http://www.azertech.net/content/jd-edwards-business-function-documentation
3836 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3838 * How I start a bioinformatics project
3839 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3841 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3843 * Bug fixes and man page updates.
3848 * --pipepart is a highly efficient alternative to --pipe if the input
3849 is a real file and not a pipe.
3851 * If using --cat or --fifo with --pipe the {} in the command will be
3852 replaced with the name of a physical file and a fifo respectively
3853 containing the block from --pipe. Useful for commands that cannot
3854 read from standard input (stdin).
3856 * --controlmaster has gotten an overhaul and is no longer
3859 * --env is now copied when determining CPUs on remote system. Useful
3860 for copying $PATH if parallel is not in the normal path.
3862 * --results now chops the argument if the argument is longer than the
3863 allowed path length.
3865 * Build now survives if pod2* are not installed.
3867 * The git repository now contains tags of releases.
3869 * GNU Parallel was cited in: Proactive System for Digital Forensic
3871 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3873 * GNU Parallel was cited in: Beyond MAP estimation with the
3874 track-oriented multiple hypothesis tracker
3875 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3877 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3879 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3881 * GNU Parallel was used (unfortunately with improper citation) in:
3882 Perspectives in magnetic resonance: NMR in the post-FFT era
3883 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3885 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3887 * Batch XML validation at the command line.
3888 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3890 * freebayes-parallel uses GNU Parallel
3891 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3893 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3895 * Speeding Up Grep Log Queries with GNU Parallel
3896 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3898 * How to run tbss_2_reg in parallel
3899 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3901 * GNU parallel example: blastn https://asciinema.org/a/8775
3903 * Iterative DNS Brute Forcing
3904 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3906 * Ejecutando comandos en paralelo
3907 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3909 * Ejecutando en paralelo en bash (ejemplo con rsync)
3910 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3912 * Bug fixes and man page updates.
3917 * Offical package for Alpine Linux now exists:
3918 http://alpinelinux.org/apk/main/x86/parallel
3920 * GNU Parallel was cited in: Estimating uncertainties in statistics
3921 computed from direct numerical simulation
3922 http://dx.doi.org/10.1063/1.4866813
3924 * GNU Parallel was cited in: Vehicle routing problems with time
3925 windows and multiple service workers: a systematic comparison
3926 between ACO and GRASP
3927 http://link.springer.com/article/10.1007/s10100-014-0341-z
3929 * GNU Parallel, quick and easy
3930 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3932 * Using Multiple CPU Cores With Command Line Tools
3933 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3935 * Batch convert mp3 CBR to VBR
3936 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3938 * Running Behat in parallel with Selenium grid
3939 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3941 * Git-Mirror per cronjob aktuell halten
3942 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3944 * Пишем многопоточный скрипт на bash
3945 http://dafter.ru/duf/howto/130.html
3947 * 如何利用多核CPU来加速你的Linux命令
3948 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3950 * Bug fixes and man page updates.
3955 * --tollef has been retired.
3957 * --compress has be redesigned due to bugs.
3959 * Format of --eta and --joblog has changed slightly.
3961 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3962 Systems for Forensic Applications
3963 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3965 * GNU Parallel was cited in: Scaleable Code Clone Detection
3966 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3968 * GNU Parallel was cited in: Clone Detection that scales
3969 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3971 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3972 Evolution of Nodes in Networks
3973 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3975 * GNU Parallel was cited in: Aggregate Characterization of User
3976 Behavior in Twitter and Analysis of the Retweet Graph
3977 http://arxiv.org/pdf/1402.2671v1
3979 * GNU Parallel was used (unfortunately without citation) in: Causal
3980 Network Models for Predicting Compound Targets and Driving Pathways
3982 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3984 * GNU Parallel was used (unfortunately without citation) in:
3985 Performance and Energy Efficiency of Common Compression /
3986 Decompression Utilities
3987 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3989 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3990 Bridging Agility and Performance in Elastic Distributed Storage
3991 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3993 * GNU Parallel was recommended (without citation) in: Redesigning the
3994 Specificity of Protein-DNA Interactions with Rosetta
3995 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3997 * GNU Parallel is co-distributed with RepeatExplorer
3998 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
4000 * Convert MP3 to a scrolling spectrum waterfall plot video
4001 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
4003 * PHP wrapper class for the GNU Parallel tool
4004 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
4006 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
4008 * Copias de archivos con rsync y parallel
4009 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
4011 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
4012 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
4014 * Распараллеливаем процессы для ускорения вычислений и выполнения
4015 заданий в Linux http://savepearlharbor.com/?p=210480
4017 * Bug fixes and man page updates.
4022 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
4024 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
4026 * HaploClique uses GNU Parallel
4027 https://github.com/armintoepfer/haploclique
4029 * Scraping NSScreencast
4030 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
4032 * 30 Cool Open Source Software I Discovered in 2013
4033 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
4035 * [Unix] 13. The power of doing things in Parallel
4036 http://leetaey.tistory.com/384
4038 * Parallel the execution of a job that read from stdin
4039 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
4041 * Mon Make à moi (6:38-11:50)
4042 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
4044 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
4045 effizienter in der Shell arbeiten
4046 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
4048 * Summary of GNU Parallel tutorial
4049 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
4051 * Bug fixes and man page updates.
4056 * GNU Parallel now has a motto: For people who live life in the
4059 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
4060 central piece of code, making this release alpha quality.
4062 * --keep-order --(n)onall will sort according to the sshlogin.
4064 * Detect the number of CPUs on DEC Tru64.
4066 * GNU sql: --list-tables for sqlite3.
4068 * GNU Parallel was cited in: Variational Message-Passing: Extension to
4069 Continuous Variables and Applications in Multi-Target Tracking
4070 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
4072 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
4074 https://www.duo.uio.no/handle/10852/37431
4076 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
4078 http://repositorio.ul.pt/handle/10451/9436
4080 * GNU Parallel was cited in: Diacritization, automatic segmentation
4081 and labeling for Levantine Arabic speech
4082 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
4084 * GNU Parallel was cited in: Investigation of emotion classification
4085 using speech rhythm metrics
4086 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
4088 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
4089 and Non-Native Speaking Styles
4090 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
4092 * GNU Parallel was cited in: Evolutionary optimization of wetlands
4094 http://dl.acm.org/citation.cfm?id=2480400
4096 * GNU Parallel was cited (unfortunately with wrong citation) in:
4097 RDBMS vs NoSQL: Performance and Scaling Comparison
4098 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
4100 * GNU Parallel was used (without proper citation) in: Comprehensive
4101 Analysis Pipeline for Discovery of Human Genetic Variation
4102 http://www.google.com/patents/US20130311106
4104 * Encrypt and decrypt in parallel with GPG
4105 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
4107 * Using GNU Parallel to create a SVM classifier
4108 http://ivanyu.me/blog/2013/12/01/parallel/
4110 * Parallel xz compression
4111 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
4113 * Got CPUs to burn? Put 'em to work with GNU parallel
4114 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
4117 http://pastebin.com/JmnB9ffq
4119 * Gnu Parallel for fun and profit
4120 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
4122 * Parallelization of Exploitation
4123 http://rantsideasstuff.com/parallelization-of-exploitation/
4125 * Running assemblies in parallel
4126 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
4128 * Procesando la contabilidad del PP
4129 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
4131 * Mon make à moi (French)
4132 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
4134 * Bug fixes and man page updates.
4139 * A citation notice is printed on stderr only if stderr is a terminal,
4140 the user has not specified --no-notice and the user has not run
4141 --bibtex once. This makes the release alpha quality.
4143 * --compress will compress temporary files. If the output is big and
4144 very compressible this will take up less disk space in $TMPDIR and
4145 possibly be faster due to less disk I/O.
4147 * --compress-program comtrols which program to use for compressing
4150 * --bar show progress as a progress bar compatible with zenity.
4152 * --resume can now be used with --result: Jobs already run will be
4155 * --transfer and --basefile support paths relative to the --workdir by
4156 inserting /./ into the path.
4158 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
4159 http://www.biomedcentral.com/1471-2105/14/334/abstract
4161 * Using GNU parallel
4162 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
4164 * Techlux - GNU - Parallel (German)
4165 https://techlux.de/blog/2013/11/07/gnu-parallel/
4167 * awk, sed, bzip2, grep, wc на всех ядрах
4168 http://vk.com/page-30666517_45528467
4170 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
4171 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
4173 * GNU Parallel (Japanese)
4174 http://jarp.does.notwork.org/diary/201311b.html#20131117
4176 * Bug fixes and man page updates.
4181 * --transfer files with /./ in the path will copy the files relative
4184 * The maximal command length is now cached in a file halfing the
4187 * GNU Parallel was cited in: Investigating speaker gender using rhythm
4188 metrics in Arabic dialects
4189 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
4191 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
4192 lastensuojelun asiakaskertomuksista
4193 https://tampub.uta.fi/handle/10024/84978
4195 * Some Additional Useful Bioinformatics Software
4196 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
4198 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
4199 http://www.youtube.com/watch?v=PpF27eC7Mys
4201 * Using GNU Parallel to roll-your-own Map Reduce!
4202 http://www.rankfocus.com/hello-world/
4204 * Use multiple CPU Cores with your Linux commands
4205 http://www.rankfocus.com/use-cpu-cores-linux-commands/
4207 * Using GNU Parallel at HPC @ Uni.lu
4208 https://hpc.uni.lu/users/use_cases/
4210 * Scaling up with parallelization
4211 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
4213 * How to teach yourself to be a technical tester
4214 http://infiniteundo.com/post/62421363463/qa-toc
4216 * Faster Rasters For All
4217 http://2013.foss4g.org/conf/programme/presentations/52/
4219 * Optimizing translated file downloads
4220 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
4222 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
4223 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
4225 * Best Practices for Amazon EMR
4226 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
4228 * Computing checksums for backup
4229 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
4231 * Un exemplu de utilizare a programului GNU parallel
4232 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
4235 http://www.slideshare.net/drakeguan/part1-23705978
4237 * なんか気持ちよかです Gnu Parallel
4238 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
4240 * Bug fixes and man page updates.
4245 * PDF-files of documentation is now included.
4247 * Cloning at warp speed 100 VMs in 1 minute using one command line
4248 http://www.beebotech.com.au/tag/command-line/
4250 * Calcul Quebec's introduction to GNU Parallel
4251 https://wiki.calculquebec.ca/w/GNU_parallel
4253 * Brincando com o GNU parallel
4254 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
4256 * GNU Parallelで並列処理を行う
4257 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
4259 * Bug fixes and man page updates.
4264 * A tutorial showing much of GNU Parallel's functionality. Spend an
4265 hour walking through the tutorial. Your commandline will love you
4266 for it. man parallel_tutorial
4268 * --line-buffer will buffer output on line basis. --group keeps the
4269 output together for a whole job. --ungroup allows output to mixup
4270 with half a line coming from one job and half a line coming from
4271 another job. --line-buffer fits between these two; it prints a full
4272 line, but will allow for mixing lines of different jobs.
4274 * --record-env records all variables and functions set. Useful to
4275 record the normal environment before using --env _.
4277 * --env _ exports all functions and variables to the remote server
4278 except for the ones recorded.
4280 * New signing key. Due to recommendations from NIST
4281 http://www.keylength.com/en/4/ the signing key was changed from
4282 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
4284 * Agalma: an automated phylogenomics workflow
4285 http://arxiv.org/pdf/1307.6432
4287 * Job ad asking for GNU Parallel expertise
4288 http://seattle.craigslist.org/est/sof/4006079352.html
4290 * Transient Beowulf Clustering with GNU Parallel and SSHfs
4291 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
4293 * Aligning to unique regions
4294 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
4296 * Top 10 scripting tricks for basic bioinformatics
4297 http://students.washington.edu/bowmanjs/wordpress/?p=873
4299 * Using GNU Parallel to speed up and simplify data analyzes
4300 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
4302 * Compression of files in parallel using GNU parallel
4303 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
4305 * Using GNU Parallel with Amazon
4306 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
4308 * Some useful comments on GNU Parallel
4309 https://news.ycombinator.com/item?id=6209767
4311 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
4312 http://drduanehassane.com/blog/sequencing-resources
4314 * TimeMachineっぽいバックアップスクリプト
4315 http://rio.tc/2013/07/timemachine-1.html
4317 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
4318 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
4320 * Bug fixes and man page updates.
4325 * --round-robin with --pipe will write all blocks to already running
4328 * --env can now transfer Bash function for remote execution. That is
4331 * GNU Parallel was used (unfortunately with improper citation) in:
4332 Understanding the Impact of E-Commerce Software on the Adoption of
4333 Structured Data on the Web
4334 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
4336 * GNU Parallel was used (unfortunately with improper citation) in:
4337 CWI at TREC 2012, KBA track and Session Track
4338 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
4340 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
4341 Interactions through Optimal Wall Shaping.
4342 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
4344 * Using GNU parallel to convert images.
4345 http://www.brunokim.com.br/blog/?p=18
4347 * A quick way to parallelize.
4348 http://timotheepoisot.fr/2013/07/08/parallel/
4350 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
4351 http://www.open-open.com/news/view/371301
4353 * Quite a few bug fixes and man page updates.
4358 * --xapply now recycles arguments if an input source has more
4359 arguments than others.
4361 * The sleep time between jobs is now both increased and decreased
4364 * 10 seconds installation check the signature using GnuPG if GnuPG is
4367 * Developer job asking for GNU Parallel expertise.
4368 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
4370 * A small utility program to run youtube-dl in parallel.
4371 https://github.com/dlh/youtube-dl-parallel
4373 * Parallelizing Freesurfer:
4374 http://blog.cogneurostats.com/?p=148
4376 * Bug fixes and man page updates.
4381 * --ctrlc is now default if --pipe is not used; thus making it
4382 possible to kill remotely started jobs simply by pressing Ctrl-C.
4384 * --timeout 200% now means kill jobs that take more than twice the
4385 time of the median run time of a job.
4387 * Jobs are now distributed round robin when having mulitiple
4388 --sshlogin instead of filling up one --sshlogin at a time.
4390 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
4393 * Bug fixes and man page updates.
4398 * 10 seconds installation: wget -O - pi.dk/3 | sh
4400 * HPUX CPU/core detection. Thanks to Javier Tarradas.
4402 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
4404 * --ctrlc will send SIGINT to tasks running on remote computers and
4407 * --load now uses 'ps' to see immediately see the number of running
4408 processes instead of 'uptime' thus making --load react much faster.
4410 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
4411 bugs. Some of these required quite extensive changes making this
4412 release beta quality.
4414 * --retries works with --onall.
4416 * The new --load computation now works on FreeBSD 7.
4418 * --nice works under tcsh.
4420 * GNU Parallel is officially supported in NetBSD.
4421 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
4423 * GNU Parallel is accepted for openSUSE.
4424 http://software.opensuse.org/package/gnu_parallel
4426 * GNU Parallel can be installed under Microsoft Windows (CygWin).
4427 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
4429 * Excuses for not installing GNU Parallel.
4430 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
4432 * Job advert that requires GNU Parallel competence.
4433 http://versium.com/about/careers/
4435 * Parallelizing Batch Jobs for Fun and Profit.
4436 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
4438 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
4439 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
4441 * GNU parallel is used throughout Scrimer.
4442 http://scrimer.readthedocs.org/en/latest/
4444 * GNU Parallel helped making public documents searchable.
4445 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
4447 * Identifying big movie files (German).
4448 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
4450 * Bug fixes and man page updates.
4455 * --resume works with --pipe.
4457 * --resume-failed will go through --joblog, redo the failed jobs and
4458 then continue like --resume.
4460 * Negative positional arguments count from the end: {-1} means the
4461 last argument, {-2} the second to last.
4463 * NetBSD CPU detection.
4465 * --blocksize increases exponentially if it smaller than a full
4468 * Processing n-line records (--pipe -L n) is now much faster.
4470 * --tollef is obsoleted after discussion on the mailing list.
4472 * GNU Parallel is the highest rated tool on:
4473 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
4475 * GNU Parallel was loved during FSFE's #ilovefs campaign.
4476 http://fsfe.org/news/2013/news-20130212-01.en.html
4478 * Using GNU Parallel with s3cmd (Japanese).
4479 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
4481 * Intro to GNU Parallel (Chinese).
4482 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
4484 * Bug fixes and man page updates.
4489 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
4490 will pause secs seconds after starting each ssh. secs can be less
4493 * Official OpenBSD port:
4494 http://ftp.openbsd.org/ports/sysutils/parallel/
4496 * Official DragonFlyBSD package:
4497 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
4499 * Post about niceload in Hungarian:
4500 http://commandline.blog.hu/2013/01/02/niceload
4502 * 自炊スキャンデータをKobo Gloに最適化
4503 http://interstadial.wordpress.com/2013/01/20/
4505 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
4506 http://oshiire.to/archives/1686
4508 * Bug fixes and man page updates.
4513 * --shebang-wrap makes is possible to parallelize scripts by putting
4514 parallel in the shebang line (the first #! line in scripts).
4516 * --delay puts in a delay after starting each job. Useful to avoid
4517 raceconditions and thundering herd problems.
4519 * --results now uses / as separator instead of TAB and thus creates
4520 subdirs. Thanks to Drew Frank.
4522 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
4524 * niceload --sensor allows for negative numbers to signify a lower
4525 number means the limit is lower.
4527 * niceload --prg suspend a named program that is already running.
4529 * niceload multiple --pid suspend process ids that are already running.
4531 * Convertir des images avec find et imagemagick
4532 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
4534 * Bug fixes and man page updates.
4539 * niceload --sensor makes it possible to use a program to control if a
4540 program should be suspended.
4542 * GNU Parallel was part of the justification for Nordic Free Software
4544 https://fsfe.org/news/2012/news-20121112-01.html
4546 * Dateien schneller packen und konvertieren mit GNU parallel
4547 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
4549 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
4550 Camera http://lunokhod.org/?p=774
4552 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
4553 http://www.cs.helsinki.fi/u/josuomel/types2/
4555 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
4556 PCA-based system for Dictionary Learning and Encoding for Robust
4558 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
4559 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
4561 * Mapreduce avec parallel, cat et une redirection
4562 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
4564 * GNU Parallel for Large Batches of Small Jobs
4565 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
4567 * GNU Parallel used in black belt tip (8:50-10:12)
4568 https://aws.amazon.com/apac/awspodcast/episode20/
4570 * Bug fixes and man page updates.
4575 * --results structures output files so they can be imported using
4576 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
4577 select output from some arguments.
4579 * Use --env to transfer environment variables through ssh to remote
4582 * GNU Parallel is accepted for Ubuntu Quantal.
4583 http://packages.ubuntu.com/quantal/parallel
4585 * GNU Parallel was requested for OpenSUSE (go vote!)
4586 https://features.opensuse.org/314461
4588 * Kneth's Korner: Map/Reduce and GNU Parallel
4589 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
4591 * Blog post in Japanese by Siguniang.
4592 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
4593 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
4594 http://www.michaelbach.de/ot/ang_cafewall/index.html
4596 * GNU Parallel, where have you been all my life?
4597 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
4599 * Reference-free ddRADseq analysis tools uses GNU Parallel.
4600 https://github.com/brantp/rtd#readme
4602 * When bash just isn’t quick enough.
4603 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
4605 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
4606 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
4608 * GNU Parallel Notes.
4609 http://xed.ch/help/parallel.html
4611 * Bug fixes and man page updates.
4616 * Due to a bugfix the main flow has changed. Making this release beta
4619 * Parallel Proxy Scraper & Checker Tool
4620 https://www.youtube.com/watch?v=iXCeR_XsP6o
4622 * Bug fixes and man page updates.
4627 * GNU Parallel was presented at Chiang Mai Bar Camp
4628 http://barcampchiangmai.org/
4630 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
4632 * I don't always max out all my CPUs, but when I do, I do it with GNU
4634 http://memegenerator.net/instance/22638454
4636 * Bug fixes and man page updates.
4641 * '-L n --pipe' will use records of n lines. This is useful when
4642 processing data that have fixed records with a fixed number of
4645 * --filter-hosts will remove down hosts. For each remote host: check
4646 that login through ssh works. If not: do not use this host.
4647 Currently you can not put --filter-hosts in a profile, $PARALLEL,
4648 /etc/parallel/config or similar. This is because GNU Parallel uses
4649 GNU Parallel to compute this, so you will get an infinite loop. This
4650 will likely be fixed in a later release.
4652 * --pipe now uses fork() instead of busy wait. The performance should
4653 be better on computers with >10 cores while remaining the same on
4654 computers with few cores.
4656 * GNU Parallel will be represented at Chiang Mai Bar Camp.
4657 http://barcampchiangmai.org/
4659 * Indexing Big Data on Amazon AWS: The Screencast
4660 (Check out his T-shirt at 18:40-21:00).
4661 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
4663 * biotoolbox uses GNU Parallel.
4664 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
4666 * Spiceweasel uses GNU Parallel.
4667 https://github.com/mattray/spiceweasel
4669 * GNU Parallel part of The Administrators Challenge.
4670 http://challenge.twistedrack.com/questions/qs3.php
4672 * Finding Oldest Firefox Code using GNU Parallel.
4673 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
4675 * Bug fixes (quite a few for remote job running) and man page updates.
4680 * Timings in --joblog now with milliseconds.
4682 * Thesis using GNU Parallel (correctly cited; hooray!).
4683 http://scholarworks.sjsu.edu/etd_projects/222/
4686 http://www.perzl.org/aix/index.php?n=Main.Parallel
4688 * Prokka uses GNU Parallel.
4689 http://bioinformatics.net.au/prokka-manual.html
4691 * GNU Parallel was presented at MUUG.
4692 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
4694 * Blog post: Manipulating many or large files with GNU parallel.
4695 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
4697 * Blog post: Running commands in parallel using bash.
4698 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
4700 * Blog post in Hungarian.
4701 http://commandline.blog.hu/2012/05/03/gnu_parallel
4703 * Popularity of GNU Parallel in Debian explodes.
4704 http://qa.debian.org/popcon-graph.php?packages=parallel
4706 * Bug fixes and man page updates.
4711 * A race condition bug caused restructuring of a central piece of the
4712 code. Thus this release of GNU Parallel should be considered beta
4715 * sql --dbsize will now list sizes of all databases if given no
4718 * GNU Parallel is now in Debian Unstable.
4719 apt-get install parallel
4721 * Article: Computational and experimental analyses of
4722 retrotransposon-associated minisatellite DNAs in the soybean genome.
4723 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
4725 * Blog post: GNU parallel - the best thing since sliced bread.
4726 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
4728 * Blog post: GNU Parallel makes everything faster.
4729 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
4731 * Blog post (German): Howto: GNU parallel.
4732 http://d24m.de/2012/04/05/howto-gnu-parallel/
4734 * Blog post: Running in Parallel
4735 http://interactivity.ifactory.com/2012/04/running-in-parallel/
4737 * 20000 watched the first intro video.
4740 * The first 5 have received their GNU Parallel merchandise
4741 https://www.gnu.org/software/parallel/merchandise.html
4743 * Bug fixes and man page updates.
4748 * Parallel Process Database Dumps.
4749 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
4751 * Using GNU Parallel to process images from Mars.
4752 http://lunokhod.org/?p=468
4754 * Using GNU Parallel with bzgrep.
4755 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
4757 * Bug fixes and man page updates.
4762 * --workdir . will use the current working dir. If the current working
4763 dir is beneath your home dir, the value . is treated as the relative
4764 path to your home dir. This means that if your home dir is different
4765 on remote computers (e.g. if your login is different) the relative
4766 path will still be relative to your home dir.
4768 * A texinfo file is now generated from the POD file using pod2texi.
4770 * The bioinformatics article "Fast large-scale clustering of protein
4771 structures using Gauss integrals" mentions GNU Parallel. They forgot
4772 to add the reference. Please remember --bibtex if you use GNU
4773 Parallel in an article.
4774 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4776 * The first supporter received his merchandise. Did you order yours?
4777 https://www.gnu.org/software/parallel/merchandise.html
4779 * How to use GNU Parallel with samtools.
4780 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4782 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4783 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4785 * Converting e-books with Calibre and GNU Parallel.
4786 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4788 * Using GNU Parallel for tailing logfiles from multiple servers.
4789 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4791 * Bug fixes and man page updates.
4796 * --header : uses the first input line as column names and you can
4797 then use {colname} as a replacement string in the command. This also
4798 works with multiple :::'s.
4800 * --header <regexp> matches a header as a regular expression and
4801 repeats the header for each block with --pipe.
4803 * --resume resumes from the last unfinished job. Useful if you stop
4804 GNU Parallel and restart it later with the same arguments.
4806 * niceload now propagates exit status correctly.
4808 * Show your support for GNU Parallel. For a limited time you can get a
4809 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4810 https://www.gnu.org/software/parallel/merchandise.html
4812 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4814 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4815 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4817 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4818 Spinellis. http://www.spinellis.gr/blog/20110911/
4820 * An article on Narwhal which uses GNU Parallel. They forgot to add
4821 the reference. Please remember --bibtex if you use GNU Parallel in
4823 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4825 * Blog post on using GNU Parallel to speed up BLAST queries:
4826 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4828 * Video showing Wake-on-LAN with GNU Parallel.
4829 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4831 * Using GNU Parallel with Solr.
4832 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4834 * First job ad including GNU Parallel:
4835 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4837 * Bug fixes and man page updates.
4842 * --timeout will now kill grandchildren.
4844 * Interview in Hacker Public Radio.
4845 http://hackerpublicradio.org/eps.php?id=0860
4847 * Blog post in Chinese.
4848 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4850 * Bug fixes and man page updates.
4855 * GNU Parallel package for Fedora.
4856 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4858 * Using GNU Parallel with Mozilla cross referencing.
4859 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4861 * Neat flash presentation of GNU Parallel.
4862 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4864 * How to create tar files of dirs in parallel.
4865 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4867 * Article in Admin Network&Security by Ben Martin.
4868 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4870 * Blog post in Polish.
4871 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4873 * Blog post on using GNU Parallel of Mac OS X.
4874 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4876 * Blog post in English by researcher.
4877 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4879 * Blog entry in Chinese.
4880 http://blog.csdn.net/tossense/article/details/6889026
4882 * Blog entry in Japanese on managing many servers.
4883 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4885 * GNU Parallel is now part of ppbs.
4886 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4888 * How to use GNU Parallel with MCX.
4889 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4891 * Bug fixes and man page updates.
4896 * --tag prepends lines with the argument(s). If used with --(n)onall
4897 the line will be prepended with the sshlogin instead.
4899 * --shellquote does not run the command but quotes it using \'s.
4900 Useful for making quoted composed commands.
4902 * --profile can now be repeated merging multiple profiles.
4904 * --bibtex now gives the BibTeX entry.
4905 Thanks to Aleksandr Levchuk for testing.
4907 * Makefile for simple .deb package.
4908 cd packager/debian; make
4910 * sql: --list-databases lists the databases.
4912 * GNU Parallel officially in Fedora 16
4913 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4915 * Blog post on recompression FLAC audio.
4916 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4918 * The most complex use of ::: I have seen so far.
4919 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4921 * Example of using GNU Parallel with sudo.
4922 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4924 * Use wget and gnu parallel to download mp3s at rocket speed.
4925 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4927 * First CV referring to GNU Parallel.
4928 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4930 * Cartwright labs usage of GNU Parallel.
4931 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4933 * Bug fixes and man page updates.
4938 * --timeout implemented so that slow commands can be killed
4940 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4942 * Example of a parallel webcrawler in the man page.
4944 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4945 http://wirtel.be/2011/07/15/rsync_parallel/
4947 * Blog post in Japanese.
4948 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4950 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4951 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4953 * Bug fixes and man page updates.
4958 * niceload: --hard will suspend a program if a limit is reached - as
4959 opposed to just slowing the program down.
4961 * niceload: --soft will slow the program down - as opposed to
4962 suspending the program completely.
4964 * niceload: --run-io will slow down a program if disk io goes above a
4967 * niceload: --run-load will slow down a program if loadaverage goes
4968 above a certain limit.
4970 * niceload: --run-mem will slow down a program if free memory goes
4971 below a certain limit.
4973 * niceload: --run-noswap will slow down a program if the computer is
4976 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4977 defer starting a program until the system is below the limit.
4979 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4981 * niceload got a major rewrite and is now object oriented.
4983 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4984 http://conferences.yapceurope.org/npw2011/talk/3416
4986 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4987 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4989 * 2 blog posts in Japanese. Thanks to Negima.
4990 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4991 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4993 * Blog post for bioinformatics. Thanks to Chris Miller.
4994 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4996 * Bug fixes and man page updates.
5001 * --onall will run all the jobs on all the computers. This is useful
5002 for systemadinistrators having multiple servers.
5004 * --nonall runs like --onall but reads no arguments from stdin
5005 (standard input), so is possible to do:
5006 parallel --nonall -S computer1,computer2 uptime
5008 * Context replace now works with multiple input sources:
5009 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
5011 * --noswap do not start a job on a server that is swapping.
5013 * Article: Parallel processing without Hadoop!
5014 http://www.solutionhacker.com/parallel-processing-without-hadoop/
5016 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
5017 http://www.linux-magazine.es/issue/67/
5019 * First blog post in Korean. Thanks to 민병국.
5020 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
5022 * Blog post in Japanese. Thanks to Naoya Nakazawa.
5023 http://www.sssg.org/blogs/naoya/archives/2003
5025 * Blog post in English. Thanks to Dagon.
5026 http://hekate.homeip.net/2011/05/29/
5028 * Bug fixes and man page updates.
5033 * Multiple ::: can be put on the command line and will be treated
5034 similar to contents from multiple -a's.
5036 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
5037 refer to inputs from the different input sources.
5039 * --xapply is now needed to get xapply's behaviour of reading one line
5040 from each of the input sources.
5042 * Multiple input sources will cause all combinations of arguments from
5043 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
5044 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
5047 * Implemented {//} for the input line with the basename removed (dirname).
5049 * New video showing the new ::: and :::: input sources.
5050 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
5052 * GNU Parallel now has a logo.
5053 http://www.gnu.org/software/parallel/logo.png
5055 * Article about GNU SQL in USENIX Magazine ;login: (print)
5056 http://www.usenix.org/publications/login/2011-04/
5058 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
5059 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
5061 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
5062 http://d.hatena.ne.jp/ichii386/20110426
5064 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
5065 http://www.hollenback.net/index.php/MacportsParallel
5067 * Robert from Echo One discusses using processes instead of threads:
5068 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
5070 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
5071 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
5073 * Short article about using GNU Parallel with lame:
5074 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
5076 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
5077 http://blog.clouder.jp/archives/001140.html
5079 * BBC Research & Development uses GNU Parallel:
5080 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
5082 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
5083 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
5085 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
5086 http://derek.chezmarcotte.ca/?p=286
5088 * Bug fixes and man page updates.
5093 * {#} now works as an alias for $PARALLEL_PID.
5095 * --eta now estimates way more accurately.
5097 * CPU detection code for AIX thanks to Christian Netrwal.
5099 * --joblog contains exitcode.
5101 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
5103 * GNU Parallel was presented at:
5104 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
5105 - OSAA.dk, Aarhus, 2011-04-12
5107 * Blog entry in Japanese. Thanks to Riywo.
5108 http://blog.riywo.com/2011/04/19/022802
5110 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
5111 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
5113 * First example of using GNU Parallel in Hebrew. Thanks to omry.
5116 * Intro video got past 10000 hits.
5117 http://www.youtube.com/watch?v=OpaiGYxkSuQ
5119 * Bug fixes and man page updates.
5124 * --tollef to be switch compatible with Tollef's parallel. This will
5125 cause -l to mean --load, and the argument separator will be --
5128 * --gnu will force GNU Parallel to behave like GNU Parallel even if
5131 * Site wide config file: /etc/parallel/config
5133 This should solve the issue with some packagers renaming GNU
5134 Parallel to gparallel to avoid the naming conflict.
5136 By putting --tollef in the site wide config file you can deinstall
5137 Tollef's parallel and install GNU Parallel instead without any
5138 change for users or scripts. This is useful for packagers that
5139 currently rename GNU Parallel or simply do not distribute GNU
5140 Parallel because the command name conflicts with Tollef's parallel.
5142 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
5143 but insert 0 arguments on the command line. Useful if you just want
5144 to run the same command with the same arguments a number of times.
5146 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
5147 http://pdb.finkproject.org/pdb/package.php/parallel
5149 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
5150 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
5152 * Man page examples translated into Japanese. Thanks to Koshigoe.
5153 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
5155 * GNU Parallel will be presented at:
5156 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
5157 - OSAA.dk, Aarhus, 2011-04-12
5159 * Video of presentation from FSCONS 2010-11-07. The presenter was
5160 _really_ hoarse that day (Something to do with loads of alcohol the
5161 night before). http://vimeo.com/20838834
5163 * Review with examples in German. Thanks to M. Nieberg.
5164 http://kenntwas.de/2011/linux/gnu-parallel/
5166 * A review of the --pipe option in German. Thanks to Mathias Huber.
5167 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
5169 * A small example of grepping maillogs. Thanks to François Maillet.
5170 http://www.francoismaillet.com/blog/?p=399
5172 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
5173 http://blog.jcuff.net/2011/02/on-train-ride-in.html
5175 * Bug fixes and man page updates.
5180 * --pipe splits piped data into blocks. Each block is piped to a
5181 program for processing. The piping and the programs will be run in
5182 parallel. Useful if the data you want to process is data for a
5183 program and not arguments.
5185 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
5186 approximate. It can deviate as much as the size of one record.
5189 * --recstart sets the string matching the start of a
5190 record. Default is "".
5192 * --recend sets the string matching the end of a
5193 record. Default is '\n'. To specify none use --recend "".
5195 If both --recstart and --recend are set, the end of a record must be
5196 followed immediately by a start of a record. This is useful if
5197 either recend or recstart can occur in the middle of a record.
5199 * --remove-rec-sep removes the string matched by --recstart and
5202 * --regexp will make GNU Parallel treat --recstart and --recend as
5203 regular expressions.
5205 * --output-as-files will put the output of the programs into files and
5206 instead of giving the output GNU Parallel will output the name of
5209 * -N if used with --pipe sets the number of records to read.
5211 * New video showing --pipe at
5212 http://www.youtube.com/watch?v=1ntxT-47VPA
5214 * GNU Parallel was presented at FOSDEM.
5216 * Article in USENIX Magazine ;login: (print)
5217 http://www.usenix.org/publications/login/2011-02/
5219 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
5220 https://www.ohloh.net/p/gnu-parallel
5222 * Advanced recursive example. Thanks to Ruarí Ødegaard.
5223 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
5225 * Small example on using GNU Parallel through 0install (German).
5226 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
5228 * Bug fixes and man page updates.
5233 * --joblog makes a simple log of completed jobs.
5235 * -X now spreads arguments between job slots when reaching last
5236 argument. Use -j1 to avoid this.
5238 * People on the email list have voted -j+0 to be the new default
5241 * First review in Polish. Thanks to Patryk Krawaczyński.
5242 http://nfsec.pl/root/2458
5244 * Review in Spanish (in print).
5245 https://www.linux-magazine.es/issue/67/moreinfo.html
5247 * Review in English. Thanks to Brian Gough.
5248 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
5250 * Review in French. Thanks to Denis Dordoigne.
5251 http://linuxfr.org/2010/12/29/27715.html
5253 * Review in Spanish.
5254 http://gufete.net/index.php?entry=entry110116-200022
5256 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
5257 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
5259 * Use case for memcache.
5260 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
5262 * Bug fixes and man page updates.
5267 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
5268 program if the load average is above a certain limit.
5270 * Implemented --tmpdir to buffer standard output and standard error in
5273 * Implemented --load to wait until the load is below a limit before
5274 starting another job on that computer.
5276 * Implemented --nice set the niceness of jobs running both locally and
5279 * Implemented --dry-run to print the job without running it.
5281 * Implemented --tty as the old default of assigning a tty to the first
5282 job causes problems.
5284 * Review with focus on clusters. Thanks to Taylor Gillespie
5285 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
5287 * Review with focus on protein similarity.
5288 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
5290 * Review in Spanish.
5291 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
5293 * Quite a few bug fixes and man page updates.
5298 * Implemented {/} for the input line with the path removed (basename).
5300 * Implemented {/.} for the input line with extension and path removed
5303 * Output from --progress is now sent to standard error instead of
5306 * --eta was broken and counted down from 0. Now fixed.
5308 * Standard output and standard error are flushed after every job so if
5309 standard output does not end with a newline it will still be grouped
5310 with the rest of standard output.
5312 * --command, -c, --file, and -f are now removed as options. They were
5313 never used in practice.
5315 * GetOptionsFromArray rewritten to work with old Perl libraries.
5317 * The file COPYING now contains the GNU General Public License 3
5319 * Major rewrite to make the code more object oriented and easier to
5320 maintain in the future.
5325 * Using -j myfile the number of jobs can be changed while GNU Parallel
5326 is running simply by changing the content of myfile.
5328 * Implemented --profile to use different .parallel/config for
5329 different situations.
5331 * Ugly newlines in $PARALLEL and .parallel/config are no longer
5332 needed. Instead you have to use \ in front of special shell
5335 * --workdir puts the files transferred to remote machines in a
5336 specified directory.
5338 * $PARALLEL_PID is set to the process id of GNU Parallel.
5340 * $PARALLEL_SEQ is set to the sequence number of the job.
5342 * -v now only shows the command to run. Use -v -v to show the
5345 * Slow spawning error is now only a warning.
5347 * If stdin is a tty and input is read from stdin you now get a
5350 * GNU sql: \n and \x0a in arguments is replaced with newline.
5352 * Patch for Debian package and spelling mistakes. Thanks to Rogério
5353 Brito <rbrito at ime dot usp dot br>
5355 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
5356 palardy at gmail dot com>
5358 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
5360 * Pardus package. Thanks to Fethican Coşkuner
5361 <fethicanc at gmail dot com>
5363 * First review in Chinese. Thanks to 曾義峰:
5364 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
5366 * First review in print:
5367 http://www.linux-magazine.com/Issues/2010 Nov 2010
5369 * First review in Spanish:
5370 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
5372 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
5374 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
5376 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
5377 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
5379 * 5000 views of the intro video:
5380 http://www.youtube.com/watch?v=OpaiGYxkSuQ
5382 * As usual a bunch of bugfixes and more usage examples in the man
5385 * GNU Parallel was presented at FSCONS 2010-11-07:
5386 http://www.fscons.org/fs/gnu-parallel Hopefully the
5387 video will be online soon.
5392 * See GNU Parallel live at FSCONS 2010-11-07:
5393 http://www.fscons.org/fs/gnu-parallel
5395 * Untested Debian and xUbuntu packages available through OpenSUSE
5397 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5399 * Using --retries a job will be retried on another computer if it
5400 fails. This is useful if some jobs fail for no apparent reason (such
5401 as network failure).
5403 * BSD xargs -o (open /dev/tty) is now default for the job running in
5404 foreground. Useful for interactive commands like:
5405 ls | parallel -Xuj1 vi
5407 * GNU sql now supports SQLite.
5409 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
5411 * GNU sql now support --list-tables
5413 * Alias for DBURL can contain '?query' part with %-quoting.
5418 * Using --shebang GNU Parallel can be used as the parser for a script.
5419 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
5422 * First community generated bugfixes
5424 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
5425 at altlinux dot org>
5427 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
5428 <sunfreeware at gmail.com>
5430 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
5431 available through OpenSUSE build service:
5432 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5434 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
5435 http://www.andrew-mcfague.com/linux/utilities-linux/
5436 commands-every-serious-nix-user-should-know/#parallel
5438 * First 1000 views of the intro video
5440 * sql - a small script to access sql bases from the command line which
5441 is a handy companion to parallel --colsep
5446 * Counting semaphore functionality: start a job in the background. If
5447 N jobs are already running, wait for one to complete. Examples:
5448 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
5449 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
5451 * With --colsep a table can be used as input. Example:
5452 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
5454 * --trim can remove white space around arguments.
5456 * --sshloginfile '..' means use ~/.parallel/sshloginfile
5458 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
5461 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
5464 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
5466 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
5467 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
5469 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
5470 Thanks to Phil Sung <psung at alum dot mit dot edu>
5475 * Arguments can now be given on the command line. Example:
5476 parallel bzip2 ::: *.txt
5478 * xapply like functionality. Example:
5479 parallel diff {1} {2} :::: filelist1 filelist2
5480 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
5482 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
5484 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
5487 * -L -l -n -s now implies -X unless -m is set
5492 * New video showing the new options.
5493 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
5494 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
5496 * 100% options complete with xargs. All options for xargs can now be
5497 used in GNU Parallel - even the more exotic.
5499 * --basefile for transferring basedata. When running jobs on remote
5500 computers --basefile will transfer files before the first jobs is
5501 run. It can be used to transfer data that remains the same for each
5502 job such as scripts or lookup tables.
5504 * --progress shows progress. To see how many jobs is running on each
5505 server use --progress. It can be turned on even after GNU Parallel
5508 * --eta shows estimated time left in seconds.
5510 * --halt-on-error stops if an error occurs. GNU Parallel will default
5511 to run all jobs - even if some of them fail. With --halt-on-error
5512 GNU Parallel can ignore errors, wait for the currently running jobs
5513 to finish, or stop immediately when an error occurs.
5518 * GNU Parallel now has support for running jobs on remote machines
5520 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
5521 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
5526 * GNU Parallel is now official GNU software