Fix #1629 more by fixing the notification handling

[pulseview.git] / pv / data / decodesignal.cpp

/*
 * This file is part of the PulseView project.
 *
 * Copyright (C) 2017 Soeren Apel <soeren@apelpie.net>
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, see <http://www.gnu.org/licenses/>.
 */

#include <cstring>
#include <forward_list>
#include <limits>

#include <QDebug>

#include "logic.hpp"
#include "logicsegment.hpp"
#include "decodesignal.hpp"
#include "signaldata.hpp"

#include <pv/data/decode/decoder.hpp>
#include <pv/data/decode/row.hpp>
#include <pv/globalsettings.hpp>
#include <pv/session.hpp>

using std::lock_guard;
using std::make_shared;
using std::min;
using std::out_of_range;
using std::shared_ptr;
using std::unique_lock;
using pv::data::decode::AnnotationClass;
using pv::data::decode::DecodeChannel;

namespace pv {
namespace data {

const double DecodeSignal::DecodeMargin = 1.0;
const double DecodeSignal::DecodeThreshold = 0.2;
const int64_t DecodeSignal::DecodeChunkLength = 256 * 1024;


DecodeSignal::DecodeSignal(pv::Session &session) :
        SignalBase(nullptr, SignalBase::DecodeChannel),
        session_(session),
        srd_session_(nullptr),
        logic_mux_data_invalid_(false),
        stack_config_changed_(true),
        current_segment_id_(0)
{
        connect(&session_, SIGNAL(capture_state_changed(int)),
                this, SLOT(on_capture_state_changed(int)));
}

DecodeSignal::~DecodeSignal()
{
        reset_decode(true);
}

const vector< shared_ptr<Decoder> >& DecodeSignal::decoder_stack() const
{
        return stack_;
}

void DecodeSignal::stack_decoder(const srd_decoder *decoder, bool restart_decode)
{
        assert(decoder);

        // Set name if this decoder is the first in the list or the name is unchanged
        const srd_decoder* prev_dec = stack_.empty() ? nullptr : stack_.back()->get_srd_decoder();
        const QString prev_dec_name = prev_dec ? QString::fromUtf8(prev_dec->name) : QString();

        if ((stack_.empty()) || ((stack_.size() > 0) && (name() == prev_dec_name)))
                set_name(QString::fromUtf8(decoder->name));

        const shared_ptr<Decoder> dec = make_shared<Decoder>(decoder, stack_.size());
        stack_.push_back(dec);

        connect(dec.get(), SIGNAL(annotation_visibility_changed()),
                this, SLOT(on_annotation_visibility_changed()));

        // Include the newly created decode channels in the channel lists
        update_channel_list();

        stack_config_changed_ = true;
        auto_assign_signals(dec);
        commit_decoder_channels();

        decoder_stacked((void*)dec.get());

        if (restart_decode)
                begin_decode();
}

void DecodeSignal::remove_decoder(int index)
{
        assert(index >= 0);
        assert(index < (int)stack_.size());

        // Find the decoder in the stack
        auto iter = stack_.begin() + index;
        assert(iter != stack_.end());

        shared_ptr<Decoder> dec = *iter;

        decoder_removed(dec.get());

        // Delete the element
        stack_.erase(iter);

        // Update channels and decoded data
        stack_config_changed_ = true;
        update_channel_list();
        begin_decode();
}

bool DecodeSignal::toggle_decoder_visibility(int index)
{
        auto iter = stack_.cbegin();
        for (int i = 0; i < index; i++, iter++)
                assert(iter != stack_.end());

        shared_ptr<Decoder> dec = *iter;

        // Toggle decoder visibility
        bool state = false;
        if (dec) {
                state = !dec->visible();
                dec->set_visible(state);
        }

        return state;
}

void DecodeSignal::reset_decode(bool shutting_down)
{
        resume_decode();  // Make sure the decode thread isn't blocked by pausing

        if (stack_config_changed_ || shutting_down)
                stop_srd_session();
        else
                terminate_srd_session();

        if (decode_thread_.joinable()) {
                decode_interrupt_ = true;
                decode_input_cond_.notify_one();
                decode_thread_.join();
        }

        if (logic_mux_thread_.joinable()) {
                logic_mux_interrupt_ = true;
                logic_mux_cond_.notify_one();
                logic_mux_thread_.join();
        }

        current_segment_id_ = 0;
        segments_.clear();

        logic_mux_data_.reset();
        logic_mux_data_invalid_ = true;

        if (!error_message_.isEmpty()) {
                error_message_.clear();
                // TODO Emulate noquote()
                qDebug().nospace() << name() << ": Error cleared";
        }

        decode_reset();
}

void DecodeSignal::begin_decode()
{
        if (decode_thread_.joinable()) {
                decode_interrupt_ = true;
                decode_input_cond_.notify_one();
                decode_thread_.join();
        }

        if (logic_mux_thread_.joinable()) {
                logic_mux_interrupt_ = true;
                logic_mux_cond_.notify_one();
                logic_mux_thread_.join();
        }

        reset_decode();

        if (stack_.size() == 0) {
                set_error_message(tr("No decoders"));
                return;
        }

        assert(channels_.size() > 0);

        if (get_assigned_signal_count() == 0) {
                set_error_message(tr("There are no channels assigned to this decoder"));
                return;
        }

        // Make sure that all assigned channels still provide logic data
        // (can happen when a converted signal was assigned but the
        // conversion removed in the meanwhile)
        for (decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal && !(ch.assigned_signal->logic_data() != nullptr))
                        ch.assigned_signal = nullptr;

        // Check that all decoders have the required channels
        for (const shared_ptr<Decoder>& dec : stack_)
                if (!dec->have_required_channels()) {
                        set_error_message(tr("One or more required channels "
                                "have not been specified"));
                        return;
                }

        // Free the logic data and its segment(s) if it needs to be updated
        if (logic_mux_data_invalid_)
                logic_mux_data_.reset();

        if (!logic_mux_data_) {
                const uint32_t ch_count = get_assigned_signal_count();
                logic_mux_unit_size_ = (ch_count + 7) / 8;
                logic_mux_data_ = make_shared<Logic>(ch_count);
        }

        if (get_input_segment_count() == 0)
                set_error_message(tr("No input data"));

        // Make sure the logic output data is complete and up-to-date
        logic_mux_interrupt_ = false;
        logic_mux_thread_ = std::thread(&DecodeSignal::logic_mux_proc, this);

        // Decode the muxed logic data
        decode_interrupt_ = false;
        decode_thread_ = std::thread(&DecodeSignal::decode_proc, this);
}

void DecodeSignal::pause_decode()
{
        decode_paused_ = true;
}

void DecodeSignal::resume_decode()
{
        // Manual unlocking is done before notifying, to avoid waking up the
        // waiting thread only to block again (see notify_one for details)
        decode_pause_mutex_.unlock();
        decode_pause_cond_.notify_one();
        decode_paused_ = false;
}

bool DecodeSignal::is_paused() const
{
        return decode_paused_;
}

const vector<decode::DecodeChannel> DecodeSignal::get_channels() const
{
        return channels_;
}

void DecodeSignal::auto_assign_signals(const shared_ptr<Decoder> dec)
{
        bool new_assignment = false;

        // Disconnect all input signal notifications so we don't have duplicate connections
        disconnect_input_notifiers();

        // Try to auto-select channels that don't have signals assigned yet
        for (decode::DecodeChannel& ch : channels_) {
                // If a decoder is given, auto-assign only its channels
                if (dec && (ch.decoder_ != dec))
                        continue;

                if (ch.assigned_signal)
                        continue;

                QString ch_name = ch.name.toLower();
                ch_name = ch_name.replace(QRegExp("[-_.]"), " ");

                shared_ptr<data::SignalBase> match;
                for (const shared_ptr<data::SignalBase>& s : session_.signalbases()) {
                        if (!s->enabled())
                                continue;

                        QString s_name = s->name().toLower();
                        s_name = s_name.replace(QRegExp("[-_.]"), " ");

                        if (s->logic_data() &&
                                ((ch_name.contains(s_name)) || (s_name.contains(ch_name)))) {
                                if (!match)
                                        match = s;
                                else {
                                        // Only replace an existing match if it matches more characters
                                        int old_unmatched = ch_name.length() - match->name().length();
                                        int new_unmatched = ch_name.length() - s->name().length();
                                        if (abs(new_unmatched) < abs(old_unmatched))
                                                match = s;
                                }
                        }
                }

                // Prevent using a signal more than once as D1 would match e.g. D1 and D10
                bool signal_not_already_used = true;
                for (decode::DecodeChannel& ch : channels_)
                        if (ch.assigned_signal && (ch.assigned_signal == match))
                                signal_not_already_used = false;

                if (match && signal_not_already_used) {
                        ch.assigned_signal = match;
                        new_assignment = true;
                }
        }

        if (new_assignment) {
                // Receive notifications when new sample data is available
                connect_input_notifiers();

                logic_mux_data_invalid_ = true;
                stack_config_changed_ = true;
                commit_decoder_channels();
                channels_updated();
        }
}

void DecodeSignal::assign_signal(const uint16_t channel_id, shared_ptr<const SignalBase> signal)
{
        // Disconnect all input signal notifications so we don't have duplicate connections
        disconnect_input_notifiers();

        for (decode::DecodeChannel& ch : channels_)
                if (ch.id == channel_id) {
                        ch.assigned_signal = signal;
                        logic_mux_data_invalid_ = true;
                }

        // Receive notifications when new sample data is available
        connect_input_notifiers();

        stack_config_changed_ = true;
        commit_decoder_channels();
        channels_updated();
        begin_decode();
}

int DecodeSignal::get_assigned_signal_count() const
{
        // Count all channels that have a signal assigned to them
        return count_if(channels_.begin(), channels_.end(),
                [](decode::DecodeChannel ch) { return ch.assigned_signal.get(); });
}

void DecodeSignal::set_initial_pin_state(const uint16_t channel_id, const int init_state)
{
        for (decode::DecodeChannel& ch : channels_)
                if (ch.id == channel_id)
                        ch.initial_pin_state = init_state;

        stack_config_changed_ = true;
        channels_updated();
        begin_decode();
}

double DecodeSignal::get_samplerate() const
{
        double result = 0;

        // TODO For now, we simply return the first samplerate that we have
        if (segments_.size() > 0)
                result = segments_.front().samplerate;

        return result;
}

const pv::util::Timestamp DecodeSignal::start_time() const
{
        pv::util::Timestamp result;

        // TODO For now, we simply return the first start time that we have
        if (segments_.size() > 0)
                result = segments_.front().start_time;

        return result;
}

int64_t DecodeSignal::get_working_sample_count(uint32_t segment_id) const
{
        // The working sample count is the highest sample number for
        // which all used signals have data available, so go through all
        // channels and use the lowest overall sample count of the segment

        int64_t count = std::numeric_limits<int64_t>::max();
        bool no_signals_assigned = true;

        for (const decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        if (!ch.assigned_signal->logic_data())
                                return 0;

                        no_signals_assigned = false;

                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();
                        if (logic_data->logic_segments().empty())
                                return 0;

                        if (segment_id >= logic_data->logic_segments().size())
                                return 0;

                        const shared_ptr<const LogicSegment> segment = logic_data->logic_segments()[segment_id]->get_shared_ptr();
                        if (segment)
                                count = min(count, (int64_t)segment->get_sample_count());
                }

        return (no_signals_assigned ? 0 : count);
}

int64_t DecodeSignal::get_decoded_sample_count(uint32_t segment_id,
        bool include_processing) const
{
        lock_guard<mutex> decode_lock(output_mutex_);

        int64_t result = 0;

        if (segment_id >= segments_.size())
                return result;

        if (include_processing)
                result = segments_[segment_id].samples_decoded_incl;
        else
                result = segments_[segment_id].samples_decoded_excl;

        return result;
}

vector<Row*> DecodeSignal::get_rows(bool visible_only)
{
        vector<Row*> rows;

        for (const shared_ptr<Decoder>& dec : stack_) {
                assert(dec);
                if (visible_only && !dec->visible())
                        continue;

                for (Row* row : dec->get_rows())
                        rows.push_back(row);
        }

        return rows;
}

vector<const Row*> DecodeSignal::get_rows(bool visible_only) const
{
        vector<const Row*> rows;

        for (const shared_ptr<Decoder>& dec : stack_) {
                assert(dec);
                if (visible_only && !dec->visible())
                        continue;

                for (const Row* row : dec->get_rows())
                        rows.push_back(row);
        }

        return rows;
}


uint64_t DecodeSignal::get_annotation_count(const Row* row, uint32_t segment_id) const
{
        if (segment_id >= segments_.size())
                return 0;

        const DecodeSegment* segment = &(segments_.at(segment_id));

        auto row_it = segment->annotation_rows.find(row);

        const RowData* rd;
        if (row_it == segment->annotation_rows.end())
                return 0;
        else
                rd = &(row_it->second);

        return rd->get_annotation_count();
}

void DecodeSignal::get_annotation_subset(deque<const Annotation*> &dest,
        const Row* row, uint32_t segment_id, uint64_t start_sample,
        uint64_t end_sample) const
{
        lock_guard<mutex> lock(output_mutex_);

        if (segment_id >= segments_.size())
                return;

        const DecodeSegment* segment = &(segments_.at(segment_id));

        auto row_it = segment->annotation_rows.find(row);

        const RowData* rd;
        if (row_it == segment->annotation_rows.end())
                return;
        else
                rd = &(row_it->second);

        rd->get_annotation_subset(dest, start_sample, end_sample);
}

void DecodeSignal::get_annotation_subset(deque<const Annotation*> &dest,
        uint32_t segment_id, uint64_t start_sample, uint64_t end_sample) const
{
        for (const Row* row : get_rows())
                get_annotation_subset(dest, row, segment_id, start_sample, end_sample);
}

uint32_t DecodeSignal::get_binary_data_chunk_count(uint32_t segment_id,
        const Decoder* dec, uint32_t bin_class_id) const
{
        if ((segments_.size() == 0) || (segment_id >= segments_.size()))
                return 0;

        const DecodeSegment *segment = &(segments_[segment_id]);

        for (const DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder == dec) && (bc.info->bin_class_id == bin_class_id))
                        return bc.chunks.size();

        return 0;
}

void DecodeSignal::get_binary_data_chunk(uint32_t segment_id,
        const  Decoder* dec, uint32_t bin_class_id, uint32_t chunk_id,
        const vector<uint8_t> **dest, uint64_t *size)
{
        if (segment_id >= segments_.size())
                return;

        const DecodeSegment *segment = &(segments_[segment_id]);

        for (const DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder == dec) && (bc.info->bin_class_id == bin_class_id)) {
                        if (dest) *dest = &(bc.chunks.at(chunk_id).data);
                        if (size) *size = bc.chunks.at(chunk_id).data.size();
                        return;
                }
}

void DecodeSignal::get_merged_binary_data_chunks_by_sample(uint32_t segment_id,
        const Decoder* dec, uint32_t bin_class_id, uint64_t start_sample,
        uint64_t end_sample, vector<uint8_t> *dest) const
{
        assert(dest != nullptr);

        if (segment_id >= segments_.size())
                return;

        const DecodeSegment *segment = &(segments_[segment_id]);

        const DecodeBinaryClass* bin_class = nullptr;
        for (const DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder == dec) && (bc.info->bin_class_id == bin_class_id))
                        bin_class = &bc;

        // Determine overall size before copying to resize dest vector only once
        uint64_t size = 0;
        uint64_t matches = 0;
        for (const DecodeBinaryDataChunk& chunk : bin_class->chunks)
                if ((chunk.sample >= start_sample) && (chunk.sample < end_sample)) {
                        size += chunk.data.size();
                        matches++;
                }
        dest->resize(size);

        uint64_t offset = 0;
        uint64_t matches2 = 0;
        for (const DecodeBinaryDataChunk& chunk : bin_class->chunks)
                if ((chunk.sample >= start_sample) && (chunk.sample < end_sample)) {
                        memcpy(dest->data() + offset, chunk.data.data(), chunk.data.size());
                        offset += chunk.data.size();
                        matches2++;

                        // Make sure we don't overwrite memory if the array grew in the meanwhile
                        if (matches2 == matches)
                                break;
                }
}

void DecodeSignal::get_merged_binary_data_chunks_by_offset(uint32_t segment_id,
        const Decoder* dec, uint32_t bin_class_id, uint64_t start, uint64_t end,
        vector<uint8_t> *dest) const
{
        assert(dest != nullptr);

        if (segment_id >= segments_.size())
                return;

        const DecodeSegment *segment = &(segments_[segment_id]);

        const DecodeBinaryClass* bin_class = nullptr;
        for (const DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder == dec) && (bc.info->bin_class_id == bin_class_id))
                        bin_class = &bc;

        // Determine overall size before copying to resize dest vector only once
        uint64_t size = 0;
        uint64_t offset = 0;
        for (const DecodeBinaryDataChunk& chunk : bin_class->chunks) {
                if (offset >= start)
                        size += chunk.data.size();
                offset += chunk.data.size();
                if (offset >= end)
                        break;
        }
        dest->resize(size);

        offset = 0;
        uint64_t dest_offset = 0;
        for (const DecodeBinaryDataChunk& chunk : bin_class->chunks) {
                if (offset >= start) {
                        memcpy(dest->data() + dest_offset, chunk.data.data(), chunk.data.size());
                        dest_offset += chunk.data.size();
                }
                offset += chunk.data.size();
                if (offset >= end)
                        break;
        }
}

const DecodeBinaryClass* DecodeSignal::get_binary_data_class(uint32_t segment_id,
        const Decoder* dec, uint32_t bin_class_id) const
{
        if (segment_id >= segments_.size())
                return nullptr;

        const DecodeSegment *segment = &(segments_[segment_id]);

        for (const DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder == dec) && (bc.info->bin_class_id == bin_class_id))
                        return &bc;

        return nullptr;
}

const deque<const Annotation*>* DecodeSignal::get_all_annotations_by_segment(
        uint32_t segment_id) const
{
        if (segment_id >= segments_.size())
                return nullptr;

        const DecodeSegment *segment = &(segments_[segment_id]);

        return &(segment->all_annotations);
}

void DecodeSignal::save_settings(QSettings &settings) const
{
        SignalBase::save_settings(settings);

        settings.setValue("decoders", (int)(stack_.size()));

        // Save decoder stack
        int decoder_idx = 0;
        for (const shared_ptr<Decoder>& decoder : stack_) {
                settings.beginGroup("decoder" + QString::number(decoder_idx++));

                settings.setValue("id", decoder->get_srd_decoder()->id);
                settings.setValue("visible", decoder->visible());

                // Save decoder options
                const map<string, GVariant*>& options = decoder->options();

                settings.setValue("options", (int)options.size());

                // Note: Decoder::options() returns only the options
                // that differ from the default. See binding::Decoder::getter()
                int i = 0;
                for (auto& option : options) {
                        settings.beginGroup("option" + QString::number(i));
                        settings.setValue("name", QString::fromStdString(option.first));
                        GlobalSettings::store_gvariant(settings, option.second);
                        settings.endGroup();
                        i++;
                }

                // Save row properties
                i = 0;
                for (const Row* row : decoder->get_rows()) {
                        settings.beginGroup("row" + QString::number(i));
                        settings.setValue("visible", row->visible());
                        settings.endGroup();
                        i++;
                }

                // Save class properties
                i = 0;
                for (const AnnotationClass* ann_class : decoder->ann_classes()) {
                        settings.beginGroup("ann_class" + QString::number(i));
                        settings.setValue("visible", ann_class->visible());
                        settings.endGroup();
                        i++;
                }

                settings.endGroup();
        }

        // Save channel mapping
        settings.setValue("channels", (int)channels_.size());

        for (unsigned int channel_id = 0; channel_id < channels_.size(); channel_id++) {
                auto channel = find_if(channels_.begin(), channels_.end(),
                        [&](decode::DecodeChannel ch) { return ch.id == channel_id; });

                if (channel == channels_.end()) {
                        qDebug() << "ERROR: Gap in channel index:" << channel_id;
                        continue;
                }

                settings.beginGroup("channel" + QString::number(channel_id));

                settings.setValue("name", channel->name);  // Useful for debugging
                settings.setValue("initial_pin_state", channel->initial_pin_state);

                if (channel->assigned_signal)
                        settings.setValue("assigned_signal_name", channel->assigned_signal->name());

                settings.endGroup();
        }
}

void DecodeSignal::restore_settings(QSettings &settings)
{
        SignalBase::restore_settings(settings);

        // Restore decoder stack
        GSList *dec_list = g_slist_copy((GSList*)srd_decoder_list());

        int decoders = settings.value("decoders").toInt();

        for (int decoder_idx = 0; decoder_idx < decoders; decoder_idx++) {
                settings.beginGroup("decoder" + QString::number(decoder_idx));

                QString id = settings.value("id").toString();

                for (GSList *entry = dec_list; entry; entry = entry->next) {
                        const srd_decoder *dec = (srd_decoder*)entry->data;
                        if (!dec)
                                continue;

                        if (QString::fromUtf8(dec->id) == id) {
                                shared_ptr<Decoder> decoder = make_shared<Decoder>(dec, stack_.size());

                                connect(decoder.get(), SIGNAL(annotation_visibility_changed()),
                                        this, SLOT(on_annotation_visibility_changed()));

                                stack_.push_back(decoder);
                                decoder->set_visible(settings.value("visible", true).toBool());

                                // Restore decoder options that differ from their default
                                int options = settings.value("options").toInt();

                                for (int i = 0; i < options; i++) {
                                        settings.beginGroup("option" + QString::number(i));
                                        QString name = settings.value("name").toString();
                                        GVariant *value = GlobalSettings::restore_gvariant(settings);
                                        decoder->set_option(name.toUtf8(), value);
                                        settings.endGroup();
                                }

                                // Include the newly created decode channels in the channel lists
                                update_channel_list();

                                // Restore row properties
                                int i = 0;
                                for (Row* row : decoder->get_rows()) {
                                        settings.beginGroup("row" + QString::number(i));
                                        row->set_visible(settings.value("visible", true).toBool());
                                        settings.endGroup();
                                        i++;
                                }

                                // Restore class properties
                                i = 0;
                                for (AnnotationClass* ann_class : decoder->ann_classes()) {
                                        settings.beginGroup("ann_class" + QString::number(i));
                                        ann_class->set_visible(settings.value("visible", true).toBool());
                                        settings.endGroup();
                                        i++;
                                }

                                break;
                        }
                }

                settings.endGroup();
                channels_updated();
        }

        // Restore channel mapping
        unsigned int channels = settings.value("channels").toInt();

        const vector< shared_ptr<data::SignalBase> > signalbases =
                session_.signalbases();

        for (unsigned int channel_id = 0; channel_id < channels; channel_id++) {
                auto channel = find_if(channels_.begin(), channels_.end(),
                        [&](decode::DecodeChannel ch) { return ch.id == channel_id; });

                if (channel == channels_.end()) {
                        qDebug() << "ERROR: Non-existant channel index:" << channel_id;
                        continue;
                }

                settings.beginGroup("channel" + QString::number(channel_id));

                QString assigned_signal_name = settings.value("assigned_signal_name").toString();

                for (const shared_ptr<data::SignalBase>& signal : signalbases)
                        if ((signal->name() == assigned_signal_name) && (signal->type() != SignalBase::DecodeChannel))
                                channel->assigned_signal = signal;

                channel->initial_pin_state = settings.value("initial_pin_state").toInt();

                settings.endGroup();
        }

        // Update the internal structures
        stack_config_changed_ = true;
        update_channel_list();
        commit_decoder_channels();

        begin_decode();
}

bool DecodeSignal::all_input_segments_complete(uint32_t segment_id) const
{
        bool all_complete = true;

        for (const decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        if (!ch.assigned_signal->logic_data())
                                continue;

                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();
                        if (logic_data->logic_segments().empty())
                                return false;

                        if (segment_id >= logic_data->logic_segments().size())
                                return false;

                        const shared_ptr<const LogicSegment> segment = logic_data->logic_segments()[segment_id]->get_shared_ptr();
                        if (segment && !segment->is_complete())
                                all_complete = false;
                }

        return all_complete;
}

uint32_t DecodeSignal::get_input_segment_count() const
{
        uint64_t count = std::numeric_limits<uint64_t>::max();
        bool no_signals_assigned = true;

        for (const decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        no_signals_assigned = false;

                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();
                        if (!logic_data || logic_data->logic_segments().empty())
                                return 0;

                        // Find the min value of all segment counts
                        if ((uint64_t)(logic_data->logic_segments().size()) < count)
                                count = logic_data->logic_segments().size();
                }

        return (no_signals_assigned ? 0 : count);
}

double DecodeSignal::get_input_samplerate(uint32_t segment_id) const
{
        double samplerate = 0;

        for (const decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();
                        if (!logic_data || logic_data->logic_segments().empty())
                                continue;

                        try {
                                const shared_ptr<const LogicSegment> segment =
                                        logic_data->logic_segments().at(segment_id)->get_shared_ptr();
                                if (segment)
                                        samplerate = segment->samplerate();
                        } catch (out_of_range&) {
                                // Do nothing
                        }
                        break;
                }

        return samplerate;
}

Decoder* DecodeSignal::get_decoder_by_instance(const srd_decoder *const srd_dec)
{
        for (shared_ptr<Decoder>& d : stack_)
                if (d->get_srd_decoder() == srd_dec)
                        return d.get();

        return nullptr;
}

void DecodeSignal::update_channel_list()
{
        vector<decode::DecodeChannel> prev_channels = channels_;
        channels_.clear();

        uint16_t id = 0;

        // Copy existing entries, create new as needed
        for (shared_ptr<Decoder>& decoder : stack_) {
                const srd_decoder* srd_dec = decoder->get_srd_decoder();
                const GSList *l;

                // Mandatory channels
                for (l = srd_dec->channels; l; l = l->next) {
                        const struct srd_channel *const pdch = (struct srd_channel *)l->data;
                        bool ch_added = false;

                        // Copy but update ID if this channel was in the list before
                        for (decode::DecodeChannel& ch : prev_channels)
                                if (ch.pdch_ == pdch) {
                                        ch.id = id++;
                                        channels_.push_back(ch);
                                        ch_added = true;
                                        break;
                                }

                        if (!ch_added) {
                                // Create new entry without a mapped signal
                                decode::DecodeChannel ch = {id++, 0, false, nullptr,
                                        QString::fromUtf8(pdch->name), QString::fromUtf8(pdch->desc),
                                        SRD_INITIAL_PIN_SAME_AS_SAMPLE0, decoder, pdch};
                                channels_.push_back(ch);
                        }
                }

                // Optional channels
                for (l = srd_dec->opt_channels; l; l = l->next) {
                        const struct srd_channel *const pdch = (struct srd_channel *)l->data;
                        bool ch_added = false;

                        // Copy but update ID if this channel was in the list before
                        for (decode::DecodeChannel& ch : prev_channels)
                                if (ch.pdch_ == pdch) {
                                        ch.id = id++;
                                        channels_.push_back(ch);
                                        ch_added = true;
                                        break;
                                }

                        if (!ch_added) {
                                // Create new entry without a mapped signal
                                decode::DecodeChannel ch = {id++, 0, true, nullptr,
                                        QString::fromUtf8(pdch->name), QString::fromUtf8(pdch->desc),
                                        SRD_INITIAL_PIN_SAME_AS_SAMPLE0, decoder, pdch};
                                channels_.push_back(ch);
                        }
                }
        }

        // Invalidate the logic output data if the channel assignment changed
        if (prev_channels.size() != channels_.size()) {
                // The number of channels changed, there's definitely a difference
                logic_mux_data_invalid_ = true;
        } else {
                // Same number but assignment may still differ, so compare all channels
                for (size_t i = 0; i < channels_.size(); i++) {
                        const decode::DecodeChannel& p_ch = prev_channels[i];
                        const decode::DecodeChannel& ch = channels_[i];

                        if ((p_ch.pdch_ != ch.pdch_) ||
                                (p_ch.assigned_signal != ch.assigned_signal)) {
                                logic_mux_data_invalid_ = true;
                                break;
                        }
                }

        }

        channels_updated();
}

void DecodeSignal::commit_decoder_channels()
{
        // Submit channel list to every decoder, containing only the relevant channels
        for (shared_ptr<Decoder> dec : stack_) {
                vector<decode::DecodeChannel*> channel_list;

                for (decode::DecodeChannel& ch : channels_)
                        if (ch.decoder_ == dec)
                                channel_list.push_back(&ch);

                dec->set_channels(channel_list);
        }

        // Channel bit IDs must be in sync with the channel's apperance in channels_
        int id = 0;
        for (decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal)
                        ch.bit_id = id++;
}

void DecodeSignal::mux_logic_samples(uint32_t segment_id, const int64_t start, const int64_t end)
{
        // Enforce end to be greater than start
        if (end <= start)
                return;

        // Fetch the channel segments and their data
        vector<shared_ptr<const LogicSegment> > segments;
        vector<const uint8_t*> signal_data;
        vector<uint8_t> signal_in_bytepos;
        vector<uint8_t> signal_in_bitpos;

        for (decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();

                        shared_ptr<const LogicSegment> segment;
                        if (segment_id < logic_data->logic_segments().size()) {
                                segment = logic_data->logic_segments().at(segment_id)->get_shared_ptr();
                        } else {
                                qDebug() << "Muxer error for" << name() << ":" << ch.assigned_signal->name() \
                                        << "has no logic segment" << segment_id;
                                logic_mux_interrupt_ = true;
                                return;
                        }

                        if (!segment)
                                return;

                        segments.push_back(segment);

                        uint8_t* data = new uint8_t[(end - start) * segment->unit_size()];
                        segment->get_samples(start, end, data);
                        signal_data.push_back(data);

                        const int bitpos = ch.assigned_signal->logic_bit_index();
                        signal_in_bytepos.push_back(bitpos / 8);
                        signal_in_bitpos.push_back(bitpos % 8);
                }

        shared_ptr<LogicSegment> output_segment;
        try {
                output_segment = logic_mux_data_->logic_segments().at(segment_id);
        } catch (out_of_range&) {
                qDebug() << "Muxer error for" << name() << ": no logic mux segment" \
                        << segment_id << "in mux_logic_samples(), mux segments size is" \
                        << logic_mux_data_->logic_segments().size();
                logic_mux_interrupt_ = true;
                return;
        }

        // Perform the muxing of signal data into the output data
        uint8_t* output = new uint8_t[(end - start) * output_segment->unit_size()];
        unsigned int signal_count = signal_data.size();

        for (int64_t sample_cnt = 0; !logic_mux_interrupt_ && (sample_cnt < (end - start));
                sample_cnt++) {

                int bitpos = 0;
                uint8_t bytepos = 0;

                const int out_sample_pos = sample_cnt * output_segment->unit_size();
                for (unsigned int i = 0; i < output_segment->unit_size(); i++)
                        output[out_sample_pos + i] = 0;

                for (unsigned int i = 0; i < signal_count; i++) {
                        const int in_sample_pos = sample_cnt * segments[i]->unit_size();
                        const uint8_t in_sample = 1 &
                                ((signal_data[i][in_sample_pos + signal_in_bytepos[i]]) >> (signal_in_bitpos[i]));

                        const uint8_t out_sample = output[out_sample_pos + bytepos];

                        output[out_sample_pos + bytepos] = out_sample | (in_sample << bitpos);

                        bitpos++;
                        if (bitpos > 7) {
                                bitpos = 0;
                                bytepos++;
                        }
                }
        }

        output_segment->append_payload(output, (end - start) * output_segment->unit_size());
        delete[] output;

        for (const uint8_t* data : signal_data)
                delete[] data;
}

void DecodeSignal::logic_mux_proc()
{
        uint32_t input_segment_count;
        do {
                input_segment_count = get_input_segment_count();
                if (input_segment_count == 0) {
                        // Wait for input data
                        unique_lock<mutex> logic_mux_lock(logic_mux_mutex_);
                        logic_mux_cond_.wait(logic_mux_lock);
                }
        } while ((!logic_mux_interrupt_) && (input_segment_count == 0));

        if (logic_mux_interrupt_)
                return;

        assert(logic_mux_data_);

        uint32_t segment_id = 0;

        // Create initial logic mux segment
        shared_ptr<LogicSegment> output_segment =
                make_shared<LogicSegment>(*logic_mux_data_, segment_id, logic_mux_unit_size_, 0);
        logic_mux_data_->push_segment(output_segment);

        output_segment->set_samplerate(get_input_samplerate(0));

        // Logic mux data is being updated
        logic_mux_data_invalid_ = false;

        connect_input_segment_notifiers(segment_id);

        uint64_t samples_to_process;
        do {
                do {
                        const uint64_t input_sample_count = get_working_sample_count(segment_id);
                        const uint64_t output_sample_count = output_segment->get_sample_count();

                        samples_to_process =
                                (input_sample_count > output_sample_count) ?
                                (input_sample_count - output_sample_count) : 0;

                        if (samples_to_process > 0) {
                                const uint64_t unit_size = output_segment->unit_size();
                                const uint64_t chunk_sample_count = DecodeChunkLength / unit_size;

                                uint64_t processed_samples = 0;
                                do {
                                        const uint64_t start_sample = output_sample_count + processed_samples;
                                        const uint64_t sample_count =
                                                min(samples_to_process - processed_samples,     chunk_sample_count);

                                        mux_logic_samples(segment_id, start_sample, start_sample + sample_count);
                                        processed_samples += sample_count;

                                        // ...and process the newly muxed logic data
                                        decode_input_cond_.notify_one();
                                } while (!logic_mux_interrupt_ && (processed_samples < samples_to_process));
                        }
                } while (!logic_mux_interrupt_ && (samples_to_process > 0));

                if (!logic_mux_interrupt_) {
                        // samples_to_process is now 0, we've exhausted the currently available input data

                        // If the input segments are complete, we've completed this segment
                        if (all_input_segments_complete(segment_id)) {
                                if (!output_segment->is_complete())
                                        output_segment->set_complete();

                                if (segment_id < get_input_segment_count() - 1) {

                                        disconnect_input_segment_notifiers(segment_id);

                                        // Process next segment
                                        segment_id++;

                                        output_segment =
                                                make_shared<LogicSegment>(*logic_mux_data_, segment_id,
                                                        logic_mux_unit_size_, 0);
                                        logic_mux_data_->push_segment(output_segment);

                                        output_segment->set_samplerate(get_input_samplerate(segment_id));

                                        connect_input_segment_notifiers(segment_id);
                                } else {
                                        // Wait for more input data if we're processing the currently last segment
                                        unique_lock<mutex> logic_mux_lock(logic_mux_mutex_);
                                        logic_mux_cond_.wait(logic_mux_lock);
                                }
                        } else {
                                // Input segments aren't all complete yet but samples_to_process is 0, wait for more input data
                                unique_lock<mutex> logic_mux_lock(logic_mux_mutex_);
                                logic_mux_cond_.wait(logic_mux_lock);
                        }
                }
        } while (!logic_mux_interrupt_);

        disconnect_input_segment_notifiers(segment_id);
}

void DecodeSignal::decode_data(
        const int64_t abs_start_samplenum, const int64_t sample_count,
        const shared_ptr<const LogicSegment> input_segment)
{
        const int64_t unit_size = input_segment->unit_size();
        const int64_t chunk_sample_count = DecodeChunkLength / unit_size;

        for (int64_t i = abs_start_samplenum;
                !decode_interrupt_ && (i < (abs_start_samplenum + sample_count));
                i += chunk_sample_count) {

                const int64_t chunk_end = min(i + chunk_sample_count,
                        abs_start_samplenum + sample_count);

                {
                        lock_guard<mutex> lock(output_mutex_);
                        // Update the sample count showing the samples including currently processed ones
                        segments_.at(current_segment_id_).samples_decoded_incl = chunk_end;
                }

                int64_t data_size = (chunk_end - i) * unit_size;
                uint8_t* chunk = new uint8_t[data_size];
                input_segment->get_samples(i, chunk_end, chunk);

                if (srd_session_send(srd_session_, i, chunk_end, chunk,
                                data_size, unit_size) != SRD_OK) {
                        set_error_message(tr("Decoder reported an error"));
                        decode_interrupt_ = true;
                }

                delete[] chunk;

                {
                        lock_guard<mutex> lock(output_mutex_);
                        // Now that all samples are processed, the exclusive sample count catches up
                        segments_.at(current_segment_id_).samples_decoded_excl = chunk_end;
                }

                // Notify the frontend that we processed some data and
                // possibly have new annotations as well
                new_annotations();

                if (decode_paused_) {
                        unique_lock<mutex> pause_wait_lock(decode_pause_mutex_);
                        decode_pause_cond_.wait(pause_wait_lock);
                }
        }
}

void DecodeSignal::decode_proc()
{
        current_segment_id_ = 0;

        // If there is no input data available yet, wait until it is or we're interrupted
        do {
                if (logic_mux_data_->logic_segments().size() == 0) {
                        // Wait for input data
                        unique_lock<mutex> input_wait_lock(input_mutex_);
                        decode_input_cond_.wait(input_wait_lock);
                }
        } while ((!decode_interrupt_) && (logic_mux_data_->logic_segments().size() == 0));

        if (decode_interrupt_)
                return;

        shared_ptr<const LogicSegment> input_segment = logic_mux_data_->logic_segments().front()->get_shared_ptr();
        if (!input_segment)
                return;

        // Create the initial segment and set its sample rate so that we can pass it to SRD
        create_decode_segment();
        segments_.at(current_segment_id_).samplerate = input_segment->samplerate();
        segments_.at(current_segment_id_).start_time = input_segment->start_time();

        start_srd_session();

        uint64_t samples_to_process = 0;
        uint64_t abs_start_samplenum = 0;
        do {
                // Keep processing new samples until we exhaust the input data
                do {
                        samples_to_process = input_segment->get_sample_count() - abs_start_samplenum;

                        if (samples_to_process > 0) {
                                decode_data(abs_start_samplenum, samples_to_process, input_segment);
                                abs_start_samplenum += samples_to_process;
                        }
                } while (!decode_interrupt_ && (samples_to_process > 0));

                if (!decode_interrupt_) {
                        // samples_to_process is now 0, we've exhausted the currently available input data

                        // If the input segment is complete, we've exhausted this segment
                        if (input_segment->is_complete()) {
                                if (current_segment_id_ < (logic_mux_data_->logic_segments().size() - 1)) {
                                        // Process next segment
                                        current_segment_id_++;

                                        try {
                                                input_segment = logic_mux_data_->logic_segments().at(current_segment_id_);
                                        } catch (out_of_range&) {
                                                qDebug() << "Decode error for" << name() << ": no logic mux segment" \
                                                        << current_segment_id_ << "in decode_proc(), mux segments size is" \
                                                        << logic_mux_data_->logic_segments().size();
                                                decode_interrupt_ = true;
                                                return;
                                        }
                                        abs_start_samplenum = 0;

                                        // Create the next segment and set its metadata
                                        create_decode_segment();
                                        segments_.at(current_segment_id_).samplerate = input_segment->samplerate();
                                        segments_.at(current_segment_id_).start_time = input_segment->start_time();

                                        // Reset decoder state but keep the decoder stack intact
                                        terminate_srd_session();
                                } else {
                                        // All segments have been processed
                                        if (!decode_interrupt_)
                                                decode_finished();

                                        // Wait for more input data
                                        unique_lock<mutex> input_wait_lock(input_mutex_);
                                        decode_input_cond_.wait(input_wait_lock);
                                }
                        } else {
                                // Input segment isn't complete yet but samples_to_process is 0, wait for more input data
                                unique_lock<mutex> input_wait_lock(input_mutex_);
                                decode_input_cond_.wait(input_wait_lock);
                        }

                }
        } while (!decode_interrupt_);
}

void DecodeSignal::start_srd_session()
{
        // If there were stack changes, the session has been destroyed by now, so if
        // it hasn't been destroyed, we can just reset and re-use it
        if (srd_session_) {
                // When a decoder stack was created before, re-use it
                // for the next stream of input data, after terminating
                // potentially still executing operations, and resetting
                // internal state. Skip the rather expensive (teardown
                // and) construction of another decoder stack.

                // TODO Reduce redundancy, use a common code path for
                // the meta/start sequence?
                terminate_srd_session();

                // Metadata is cleared also, so re-set it
                uint64_t samplerate = 0;
                if (segments_.size() > 0)
                        samplerate = segments_.at(current_segment_id_).samplerate;
                if (samplerate)
                        srd_session_metadata_set(srd_session_, SRD_CONF_SAMPLERATE,
                                g_variant_new_uint64(samplerate));
                for (const shared_ptr<Decoder>& dec : stack_)
                        dec->apply_all_options();
                srd_session_start(srd_session_);

                return;
        }

        // Create the session
        srd_session_new(&srd_session_);
        assert(srd_session_);

        // Create the decoders
        srd_decoder_inst *prev_di = nullptr;
        for (const shared_ptr<Decoder>& dec : stack_) {
                srd_decoder_inst *const di = dec->create_decoder_inst(srd_session_);

                if (!di) {
                        set_error_message(tr("Failed to create decoder instance"));
                        srd_session_destroy(srd_session_);
                        srd_session_ = nullptr;
                        return;
                }

                if (prev_di)
                        srd_inst_stack(srd_session_, prev_di, di);

                prev_di = di;
        }

        // Start the session
        if (segments_.size() > 0)
                srd_session_metadata_set(srd_session_, SRD_CONF_SAMPLERATE,
                        g_variant_new_uint64(segments_.at(current_segment_id_).samplerate));

        srd_pd_output_callback_add(srd_session_, SRD_OUTPUT_ANN,
                DecodeSignal::annotation_callback, this);

        srd_pd_output_callback_add(srd_session_, SRD_OUTPUT_BINARY,
                DecodeSignal::binary_callback, this);

        srd_session_start(srd_session_);

        // We just recreated the srd session, so all stack changes are applied now
        stack_config_changed_ = false;
}

void DecodeSignal::terminate_srd_session()
{
        // Call the "terminate and reset" routine for the decoder stack
        // (if available). This does not harm those stacks which already
        // have completed their operation, and reduces response time for
        // those stacks which still are processing data while the
        // application no longer wants them to.
        if (srd_session_) {
                srd_session_terminate_reset(srd_session_);

                // Metadata is cleared also, so re-set it
                uint64_t samplerate = 0;
                if (segments_.size() > 0)
                        samplerate = segments_.at(current_segment_id_).samplerate;
                if (samplerate)
                        srd_session_metadata_set(srd_session_, SRD_CONF_SAMPLERATE,
                                g_variant_new_uint64(samplerate));
                for (const shared_ptr<Decoder>& dec : stack_)
                        dec->apply_all_options();
        }
}

void DecodeSignal::stop_srd_session()
{
        if (srd_session_) {
                // Destroy the session
                srd_session_destroy(srd_session_);
                srd_session_ = nullptr;

                // Mark the decoder instances as non-existant since they were deleted
                for (const shared_ptr<Decoder>& dec : stack_)
                        dec->invalidate_decoder_inst();
        }
}

void DecodeSignal::connect_input_notifiers()
{
        // Connect the currently used signals to our slot
        for (decode::DecodeChannel& ch : channels_) {
                if (!ch.assigned_signal)
                        continue;
                const data::SignalBase *signal = ch.assigned_signal.get();
                connect(signal, SIGNAL(samples_cleared()),
                        this, SLOT(on_data_cleared()));
                connect(signal, SIGNAL(samples_added(uint64_t, uint64_t, uint64_t)),
                        this, SLOT(on_data_received()));
        }
}

void DecodeSignal::disconnect_input_notifiers()
{
        // Disconnect the notification slot from the previous set of signals
        for (decode::DecodeChannel& ch : channels_) {
                if (!ch.assigned_signal)
                        continue;
                const data::SignalBase *signal = ch.assigned_signal.get();
                disconnect(signal, nullptr, this, SLOT(on_data_cleared()));
                disconnect(signal, nullptr, this, SLOT(on_data_received()));
        }
}

void DecodeSignal::connect_input_segment_notifiers(uint32_t segment_id)
{
        for (decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();

                        shared_ptr<const LogicSegment> segment;
                        if (segment_id < logic_data->logic_segments().size()) {
                                segment = logic_data->logic_segments().at(segment_id)->get_shared_ptr();
                        } else {
                                qWarning() << "Signal" << name() << ":" << ch.assigned_signal->name() \
                                        << "has no logic segment, can't connect notifier" << segment_id;
                                continue;
                        }

                        if (!segment)
                                continue;

                        connect(segment.get(), SIGNAL(completed()), this, SLOT(on_input_segment_completed()));
                }
}

void DecodeSignal::disconnect_input_segment_notifiers(uint32_t segment_id)
{
        for (decode::DecodeChannel& ch : channels_)
                if (ch.assigned_signal) {
                        const shared_ptr<Logic> logic_data = ch.assigned_signal->logic_data();

                        shared_ptr<const LogicSegment> segment;
                        if (segment_id < logic_data->logic_segments().size()) {
                                segment = logic_data->logic_segments().at(segment_id)->get_shared_ptr();
                        } else {
                                continue;
                        }

                        if (!segment)
                                continue;

                        disconnect(segment.get(), SIGNAL(completed()), this, SLOT(on_input_segment_completed()));
                }
}

void DecodeSignal::create_decode_segment()
{
        // Create annotation segment
        segments_.emplace_back();

        // Add annotation classes
        for (const shared_ptr<Decoder>& dec : stack_)
                for (Row* row : dec->get_rows())
                        segments_.back().annotation_rows.emplace(row, RowData(row));

        // Prepare our binary output classes
        for (const shared_ptr<Decoder>& dec : stack_) {
                uint32_t n = dec->get_binary_class_count();

                for (uint32_t i = 0; i < n; i++)
                        segments_.back().binary_classes.push_back(
                                {dec.get(), dec->get_binary_class(i), deque<DecodeBinaryDataChunk>()});
        }
}

void DecodeSignal::annotation_callback(srd_proto_data *pdata, void *decode_signal)
{
        assert(pdata);
        assert(decode_signal);

        DecodeSignal *const ds = (DecodeSignal*)decode_signal;
        assert(ds);

        if (ds->decode_interrupt_)
                return;

        if (ds->segments_.empty())
                return;

        lock_guard<mutex> lock(ds->output_mutex_);

        // Get the decoder and the annotation data
        assert(pdata->pdo);
        assert(pdata->pdo->di);
        const srd_decoder *const srd_dec = pdata->pdo->di->decoder;
        assert(srd_dec);

        const srd_proto_data_annotation *const pda = (const srd_proto_data_annotation*)pdata->data;
        assert(pda);

        // Find the row
        Decoder* dec = ds->get_decoder_by_instance(srd_dec);
        assert(dec);

        AnnotationClass* ann_class = dec->get_ann_class_by_id(pda->ann_class);
        if (!ann_class) {
                qWarning() << "Decoder" << ds->display_name() << "wanted to add annotation" <<
                        "with class ID" << pda->ann_class << "but there are only" <<
                        dec->ann_classes().size() << "known classes";
                return;
        }

        const Row* row = ann_class->row;

        if (!row)
                row = dec->get_row_by_id(0);

        RowData& row_data = ds->segments_[ds->current_segment_id_].annotation_rows.at(row);

        // Add the annotation to the row
        const Annotation* ann = row_data.emplace_annotation(pdata);

        // We insert the annotation into the global annotation list in a way so that
        // the annotation list is sorted by start sample and length. Otherwise, we'd
        // have to sort the model, which is expensive
        deque<const Annotation*>& all_annotations =
                ds->segments_[ds->current_segment_id_].all_annotations;

        if (all_annotations.empty()) {
                all_annotations.emplace_back(ann);
        } else {
                const uint64_t new_ann_len = (pdata->end_sample - pdata->start_sample);
                bool ann_has_earlier_start = (pdata->start_sample < all_annotations.back()->start_sample());
                bool ann_is_longer = (new_ann_len >
                        (all_annotations.back()->end_sample() - all_annotations.back()->start_sample()));

                if (ann_has_earlier_start && ann_is_longer) {
                        bool ann_has_same_start;
                        auto it = all_annotations.end();

                        do {
                                it--;
                                ann_has_earlier_start = (pdata->start_sample < (*it)->start_sample());
                                ann_has_same_start = (pdata->start_sample == (*it)->start_sample());
                                ann_is_longer = (new_ann_len > (*it)->length());
                        } while ((ann_has_earlier_start || (ann_has_same_start && ann_is_longer)) && (it != all_annotations.begin()));

                        // Allow inserting at the front
                        if (it != all_annotations.begin())
                                it++;

                        all_annotations.emplace(it, ann);
                } else
                        all_annotations.emplace_back(ann);
        }

        // When emplace_annotation() inserts instead of appends an annotation,
        // the pointers in all_annotations that follow the inserted annotation and
        // point to annotations for this row are off by one and must be updated
        if (&(row_data.annotations().back()) != ann) {
                // Search backwards until we find the annotation we just added
                auto row_it = row_data.annotations().end();
                auto all_it = all_annotations.end();
                do {
                        all_it--;
                        if ((*all_it)->row_data() == &row_data)
                                row_it--;
                } while (&(*row_it) != ann);

                // Update the annotation addresses for this row's annotations until the end
                do {
                        if ((*all_it)->row_data() == &row_data) {
                                *all_it = &(*row_it);
                                row_it++;
                        }
                        all_it++;
                } while (all_it != all_annotations.end());
        }
}

void DecodeSignal::binary_callback(srd_proto_data *pdata, void *decode_signal)
{
        assert(pdata);
        assert(decode_signal);

        DecodeSignal *const ds = (DecodeSignal*)decode_signal;
        assert(ds);

        if (ds->decode_interrupt_)
                return;

        // Get the decoder and the binary data
        assert(pdata->pdo);
        assert(pdata->pdo->di);
        const srd_decoder *const srd_dec = pdata->pdo->di->decoder;
        assert(srd_dec);

        const srd_proto_data_binary *const pdb = (const srd_proto_data_binary*)pdata->data;
        assert(pdb);

        // Find the matching DecodeBinaryClass
        DecodeSegment* segment = &(ds->segments_.at(ds->current_segment_id_));

        DecodeBinaryClass* bin_class = nullptr;
        for (DecodeBinaryClass& bc : segment->binary_classes)
                if ((bc.decoder->get_srd_decoder() == srd_dec) &&
                        (bc.info->bin_class_id == (uint32_t)pdb->bin_class))
                        bin_class = &bc;

        if (!bin_class) {
                qWarning() << "Could not find valid DecodeBinaryClass in segment" <<
                                ds->current_segment_id_ << "for binary class ID" << pdb->bin_class <<
                                ", segment only knows" << segment->binary_classes.size() << "classes";
                return;
        }

        // Add the data chunk
        bin_class->chunks.emplace_back();
        DecodeBinaryDataChunk* chunk = &(bin_class->chunks.back());

        chunk->sample = pdata->start_sample;
        chunk->data.resize(pdb->size);
        memcpy(chunk->data.data(), pdb->data, pdb->size);

        Decoder* dec = ds->get_decoder_by_instance(srd_dec);

        ds->new_binary_data(ds->current_segment_id_, (void*)dec, pdb->bin_class);
}

void DecodeSignal::on_capture_state_changed(int state)
{
        // If a new acquisition was started, we need to start decoding from scratch
        if (state == Session::Running) {
                logic_mux_data_invalid_ = true;
                begin_decode();
        }
}

void DecodeSignal::on_data_cleared()
{
        reset_decode();
}

void DecodeSignal::on_data_received()
{
        // If we detected a lack of input data when trying to start decoding,
        // we have set an error message. Only try again if we now have data
        // to work with
        if ((!error_message_.isEmpty()) && (get_input_segment_count() == 0))
                return;
        else {
                error_message_.clear();
                // TODO Emulate noquote()
                qDebug().nospace() << name() << ": Error cleared";
        }

        if (!logic_mux_thread_.joinable())
                begin_decode();
        else
                logic_mux_cond_.notify_one();
}

void DecodeSignal::on_input_segment_completed()
{
        if (!logic_mux_thread_.joinable())
                logic_mux_cond_.notify_one();
}

void DecodeSignal::on_annotation_visibility_changed()
{
        annotation_visibility_changed();
}

} // namespace data
} // namespace pv