setup.py

   1 from setuptools import setup, dist#, Extension
   2 from distutils.extension import Extension
   3
   4 # We need to have numpy and cython imported before calling cythonize
   5 # cf. https://luminousmen.com/post/resolve-cython-and-numpy-dependencies
   6 # and https://github.com/pypa/pip/issues/5761
   7
   8 dist.Distribution().fetch_build_eggs(['Cython>=0.28', 'numpy>=1.2'])
   9
  10 from Cython.Build import cythonize, build_ext
  11 import numpy
  12 numpy_includes=numpy.get_include()
  13
  14 # setuptools DWIM monkey-patch madness
  15 # http://mail.python.org/pipermail/distutils-sig/2007-September/thread.html#8204
  16 #import sys
  17 #if 'setuptools.extension' in sys.modules:
  18 #        m = sys.modules['setuptools.extension']
  19 #        m.Extension.__dict__ = m._Extension.__dict__
  20
  21 # TODO CHECK THIS OUT http://stackoverflow.com/questions/4056657/what-is-the-easiest-way-to-make-an-optional-c-extension-for-a-python-package
  22 # AND THIS https://groups.google.com/forum/#!topic/cython-users/GAAPYb2X304
  23 # also this: https://docs.python.org/2/extending/building.html
  24 import os
  25
  26 #print("You might want to add additional library path to LD_LIBRARY_PATH (especially if you are not using"
  27 #        " GNU GSL in your system library path) and if import fails. ")
  28 #if("LD_LIBRARY_PATH" in os.environ):
  29 #    print(os.environ['LD_LIBRARY_PATH'].split(':'))
  30
  31
  32
  33 '''
  34 amos_sources = [
  35         'amos/d1mach.f',
  36         'amos/dgamln.f',
  37         'amos/i1mach.f',
  38         'amos/xerror.f',
  39         'amos/zabs.f',
  40         'amos/zacai.f',
  41         'amos/zacon.f',
  42         'amos/zairy.f',
  43         'amos/zasyi.f',
  44         'amos/zbesh.f',
  45         'amos/zbesi.f',
  46         'amos/zbesj.f',
  47         'amos/zbesk.f',
  48         'amos/zbesy.f',
  49         'amos/zbinu.f',
  50         'amos/zbiry.f',
  51         'amos/zbknu.f',
  52         'amos/zbuni.f',
  53         'amos/zbunk.f',
  54         'amos/zdiv.f',
  55         'amos/zexp.f',
  56         'amos/zkscl.f',
  57         'amos/zlog.f',
  58         'amos/zmlri.f',
  59         'amos/zmlt.f',
  60         'amos/zrati.f',
  61         'amos/zs1s2.f',
  62         'amos/zseri.f',
  63         'amos/zshch.f',
  64         'amos/zsqrt.f',
  65         'amos/zuchk.f',
  66         'amos/zunhj.f',
  67         'amos/zuni1.f',
  68         'amos/zuni2.f',
  69         'amos/zunik.f',
  70         'amos/zunk1.f',
  71         'amos/zunk2.f',
  72         'amos/zuoik.f',
  73         'amos/zwrsk.f',
  74         ]
  75
  76 libqpms_sources = [
  77             #'qpms/hexpoints_c.pyx',
  78             'qpms/gaunt.c',#'qpms/gaunt.h','qpms/vectors.h','qpms/translations.h',
  79             # FIXME http://stackoverflow.com/questions/4259170/python-setup-script-extensions-how-do-you-include-a-h-file
  80             'qpms/translations.c',
  81             'qpms/symmetries.c',
  82             'qpms/wigner.c',
  83             'qpms/scatsystem.c',
  84             'qpms/vswf.c', # FIXME many things from vswf.c are not required by this module, but they have many dependencies (following in this list); maybe I want to move all the  "basespec stuff"
  85             'qpms/legendre.c',
  86             'qpms/tmatrices.c',
  87             'qpms/materials.c',
  88             'qpms/error.c',
  89             'qpms/bessel.c',
  90             'qpms/own_zgemm.c',
  91             'qpms/pointgroups.c',
  92             ]
  93 '''
  94
  95 common_libs=['qpms', 'gsl', 'lapacke', 'blas', 'pthread',]
  96
  97 cycommon = Extension('qpms.cycommon',
  98         sources = ['qpms/cycommon.pyx'],
  99         #extra_link_args=['qpms/libqpms.a'],
 100         libraries = common_libs,
 101         include_dirs = [numpy_includes],
 102         )
 103 cytmatrices = Extension('qpms.cytmatrices',
 104         sources = ['qpms/cytmatrices.pyx'],
 105         #extra_link_args=['qpms/libqpms.a', 'amos/libamos.a'],
 106         libraries = common_libs,
 107         include_dirs = [numpy_includes],
 108         )
 109 cywaves = Extension('qpms.cywaves',
 110         sources = ['qpms/cywaves.pyx'],
 111         libraries = common_libs,
 112         include_dirs = [numpy_includes],
 113         )
 114 cytranslations = Extension('qpms.cytranslations',
 115         sources = ['qpms/cytranslations.pyx',
 116             'qpms/translations_python.c',
 117             ],
 118         extra_compile_args=['-std=c99',
 119             '-DQPMS_COMPILE_PYTHON_EXTENSIONS', # This is needed to enable it in translations.h
 120             ],
 121         #extra_link_args=['qpms/libqpms.a', 'amos/libamos.a'],
 122         libraries = common_libs,
 123         include_dirs = [numpy_includes],
 124         )
 125 cybspec = Extension('qpms.cybspec',
 126         sources = ['qpms/cybspec.pyx'],
 127         #extra_link_args=['qpms/libqpms.a'],
 128         libraries = common_libs,
 129         include_dirs = [numpy_includes],
 130         )
 131 cymaterials = Extension('qpms.cymaterials',
 132         sources = ['qpms/cymaterials.pyx'],
 133         #extra_link_args=['qpms/libqpms.a'],
 134         libraries = common_libs,
 135         include_dirs = [numpy_includes],
 136         )
 137 cyquaternions = Extension('qpms.cyquaternions',
 138         sources = ['qpms/cyquaternions.pyx'],
 139         #extra_link_args=['amos/libamos.a', 'qpms/libqpms.a'],
 140         libraries = common_libs,
 141         include_dirs = [numpy_includes],
 142         )
 143 cyewaldtest = Extension('qpms.cyewaldtest',
 144         sources = ['qpms/cyewaldtest.pyx'],
 145         libraries = common_libs,
 146         include_dirs = [numpy_includes],
 147         )
 148
 149 qpms_c = Extension('qpms.qpms_c',
 150         sources = ['qpms/qpms_c.pyx',],
 151         libraries = common_libs,
 152         include_dirs=['amos', 'qpms', numpy_includes],
 153         extra_link_args=['-fopenmp'],
 154         extra_compile_args=['-fopenmp'],
 155         )
 156
 157 setup(name='qpms',
 158         version = "0.2.996",
 159         packages=['qpms'],
 160 #        libraries = [('amos', {'sources': amos_sources} )],
 161         setup_requires=['cython>=0.28','numpy>=1.2','setuptools>=18.0'],
 162         install_requires=['cython>=0.28',
 163             #'quaternion','spherical_functions',
 164             'scipy>=0.18.0', 'sympy>=1.2', 'numpy>=1.2'],
 165         #dependency_links=['https://github.com/moble/quaternion/archive/v2.0.tar.gz','https://github.com/moble/spherical_functions/archive/master.zip'],
 166         ext_modules=cythonize([qpms_c, cywaves, cytranslations, cytmatrices, cycommon, cyquaternions, cybspec, cymaterials, cyewaldtest], include_path=['qpms', 'amos'], gdb_debug=True),
 167         cmdclass = {'build_ext': build_ext},
 168         zip_safe=False
 169         )
 170
 171