js/CXGN/AJAX/Ontology.js

   1
   2 /**
   3 * @class Ontology
   4 * Function used for printing ontology annotations
   5 * and helper functions for populating the menus of the associate_ontology tool
   6 * @author Naama Menda <nm249@cornell.edu>
   7 *
   8 */
   9
  10 JSAN.use('jquery');
  11 JSAN.use('jqueryui');
  12 JSAN.use('popup');
  13 JSAN.use('CXGN.Phenome.Tools');
  14
  15 var Ontology = {
  16     submitCvtermForm: function(cvterm_add_uri, ontology_url) {
  17         var onto_html = this.displayOntologies( "ontology" , ontology_url);
  18         //make an AJAX request with the form params
  19         var object_id = jQuery('#object_id').val();
  20         var relationship = jQuery('#relationship_select').val();
  21         var evidence_code = jQuery('#evidence_code_select').val();
  22         var evidence_description = jQuery('#evidence_description_select').val();
  23         var evidence_with = jQuery('#evidence_with_select').val();
  24         var reference = jQuery('#reference_select').val();
  25         var term_name =  jQuery('#term_name').val();
  26         jQuery.ajax({
  27                 url: "/ajax/locus/associate_ontology" ,
  28                     type: 'POST',
  29                     dataType: "json",
  30                     async: false,
  31             data: {
  32                 'term_name': term_name,
  33                 'object_id': object_id,
  34                 'relationship': relationship,
  35                 'evidence_code': evidence_code,
  36                 'evidence_description': evidence_description,
  37                 'evidence_with': evidence_with,
  38                 'reference': reference ,
  39             },
  40             success: function(response) {
  41                 var error = response.error;
  42                 if (error) { alert(error) ; }
  43             },
  44             error: function () {
  45                 alert('Error submitting ontology term');
  46             }
  47
  48         } );
  49         Tools.toggleContent('associate_cvterm_form', 'locus_ontology')
  50         jQuery("#ontology").html( this.displayOntologies( "ontology" , ontology_url) );
  51     },
  52
  53     displayOntologies: function(div_id, url) {
  54         //alternate show the annotation and the detailed evidence
  55         jQuery(function() {
  56                 jQuery("#ontology_show_details").show()
  57                 jQuery("#ontology_show_details input").click(function() {
  58                         if( this.checked ) {
  59                             jQuery("#ontology .evidence").show();
  60                             jQuery(this).addClass('active');
  61                         } else {
  62                             jQuery("#ontology .evidence").hide();
  63                             jQuery(this).removeClass('active');
  64                         }
  65                     });
  66             });
  67         jQuery.ajax( { url: url , dataType: "json",
  68                     success: function(response) {
  69                     var json = response;
  70                     jQuery("#"+div_id).html(response.html);
  71                     if ( response.error ) { alert(x.error) ; }
  72                     if (response.html ) {
  73                         jQuery("#ontology_show_details input").first()[0].disabled = false;
  74                         jQuery("#ontology .evidence").hide();
  75                     } else { jQuery('#ontology_show_details').hide(); }
  76                 }
  77             });
  78     },
  79
  80
  81     ////
  82     //Make an ajax request for finding the available objects for ontology evidence
  83     //(relationships, evidence codes, evidence description
  84     populateEvidence: function(div_id, uri, dummy_option) {
  85         jQuery.ajax({ url: uri , method:"GET" ,
  86                     async: false,
  87                     success: function(response) {
  88                     var error = response.error;
  89                     if (error) { alert(error) ; }
  90                     var select = jQuery('#'+div_id);
  91                     ////
  92                     var arraykeys=[];
  93                     for(var k in response) {arraykeys.push(k); }
  94                     arraykeys.sort();
  95                     var outputarray=[];
  96                     for(var i=0; i<arraykeys.length; i++) {
  97                         outputarray[arraykeys[i]]=response[arraykeys[i]];
  98                     }
  99                     ////
 100                     var options = '';
 101                     if (!dummy_option) dummy_option = '--Please select one--';
 102                     options += '<option value="">' + dummy_option + '</option>';
 103                     for ( var j in outputarray) {
 104                         if ( !(isNaN(outputarray[j])) ) {
 105                             options += '<option value="' + outputarray[j] + '">' + j + '</option>';
 106                         }
 107                     }
 108                     jQuery("#"+div_id).html(options);
 109                 }
 110             });
 111     },
 112     getEvidenceWith: function() {
 113     },
 114     getReference: function() {
 115     },
 116
 117 }