js/CXGN/BreedersToolbox/AddTrial.js

   1 /*jslint browser: true, devel: true */
   2
   3 /**
   4
   5 =head1 AddTrial.js
   6
   7 Dialogs for adding trials
   8
   9
  10 =head1 AUTHOR
  11
  12 Jeremy D. Edwards <jde22@cornell.edu>
  13
  14 =cut
  15
  16 */
  17
  18
  19 var $j = jQuery.noConflict();
  20
  21 jQuery(document).ready(function ($) {
  22
  23     var list = new CXGN.List();
  24
  25     var design_json;
  26
  27     function save_project_info(name, year, desc) {
  28         alert('data = ' + name + ' ' + year + ' ' + desc);
  29         $.ajax({
  30             type: 'GET',
  31             async: false,
  32             url: '/ajax/breeders/project/insert',
  33             data: {
  34                 'project_name': name,
  35                 'project_description': desc,
  36                 'year': year
  37             },
  38             success: function (response) {
  39                 if (response.error) {
  40                     alert(response.error);
  41                 } else {
  42                     alert('The trial information was saved.');
  43                 }
  44             },
  45             error: function () {
  46                 alert('An error occurred. sorry');
  47             }
  48         });
  49     }
  50
  51     var stock_list_id;
  52     var stock_list;
  53     var check_stock_list_id;
  54     var check_stock_list;
  55     var crbd_check_stock_list_id;
  56     var crbd_check_stock_list;
  57     var unrep_stock_list_id;
  58     var unrep_stock_list;
  59     var rep_stock_list_id;
  60     var rep_stock_list;
  61     var seedlot_list_id;
  62     var seedlot_list;
  63     var accession_list_seedlot_hash = {};
  64     var checks_list_seedlot_hash = {};
  65     var crbd_checks_list_seedlot_hash = {};
  66     var unrep_list_seedlot_hash = {};
  67     var rep_list_seedlot_hash = {};
  68
  69     $(document).on('focusout', '#select_list_list_select', function() {
  70         if ($('#select_list_list_select').val()) {
  71             stock_list_id = $('#select_list_list_select').val();
  72             stock_list = JSON.stringify(list.getList(stock_list_id));
  73             verify_stock_list(stock_list);
  74             if(stock_list && seedlot_list){
  75                 verify_seedlot_list(stock_list, seedlot_list, 'stock_list');
  76             } else {
  77                 accession_list_seedlot_hash = {};
  78             }
  79         }
  80     });
  81
  82     $(document).on('focusout', '#list_of_checks_section_list_select', function() {
  83         if ($('#list_of_checks_section_list_select').val()) {
  84             check_stock_list_id = $('#list_of_checks_section_list_select').val();
  85             check_stock_list = JSON.stringify(list.getList(check_stock_list_id));
  86             verify_stock_list(check_stock_list);
  87             if(check_stock_list && seedlot_list){
  88                 verify_seedlot_list(check_stock_list, seedlot_list, 'check_stock_list');
  89             } else {
  90                 checks_list_seedlot_hash = {};
  91             }
  92         }
  93     });
  94
  95     $(document).on('focusout', '#crbd_list_of_checks_section_list_select', function() {
  96         if ($('#crbd_list_of_checks_section_list_select').val()) {
  97             crbd_check_stock_list_id = $('#crbd_list_of_checks_section_list_select').val();
  98             crbd_check_stock_list = JSON.stringify(list.getList(crbd_check_stock_list_id));
  99             verify_stock_list(crbd_check_stock_list);
 100             if(crbd_check_stock_list && seedlot_list){
 101                 verify_seedlot_list(crbd_check_stock_list, seedlot_list, 'crbd_check_stock_list');
 102             } else {
 103                 crbd_checks_list_seedlot_hash = {};
 104             }
 105         }
 106     });
 107
 108     $(document).on('focusout', '#list_of_unrep_accession_list_select', function() {
 109         if ($('#list_of_unrep_accession_list_select').val()) {
 110             unrep_stock_list_id = $('#list_of_unrep_accession_list_select').val();
 111             unrep_stock_list = JSON.stringify(list.getList(unrep_stock_list_id));
 112             verify_stock_list(unrep_stock_list);
 113             if(unrep_stock_list && seedlot_list){
 114                 verify_seedlot_list(unrep_stock_list, seedlot_list, 'unrep_stock_list');
 115             } else {
 116                 unrep_list_seedlot_hash = {};
 117             }
 118         }
 119     });
 120
 121     $(document).on('focusout', '#list_of_rep_accession_list_select', function() {
 122         if ($('#list_of_rep_accession_list_select').val()) {
 123             rep_stock_list_id = $('#list_of_rep_accession_list_select').val();
 124             rep_stock_list = JSON.stringify(list.getList(rep_stock_list_id));
 125             verify_stock_list(rep_stock_list);
 126             if(rep_stock_list && seedlot_list){
 127                 verify_seedlot_list(rep_stock_list, seedlot_list, 'rep_stock_list');
 128             } else {
 129                 rep_list_seedlot_hash = {};
 130             }
 131         }
 132     });
 133
 134     $(document).on('focusout', '#select_seedlot_list_list_select', function() {
 135         if ($('#select_seedlot_list_list_select').val() != '') {
 136             seedlot_list_id = $('#select_seedlot_list_list_select').val();
 137             seedlot_list = JSON.stringify(list.getList(seedlot_list_id));
 138             if(stock_list && seedlot_list){
 139                 verify_seedlot_list(stock_list, seedlot_list, 'stock_list');
 140             } else {
 141                 alert('Please make sure to select an accession list above!');
 142             }
 143             if(check_stock_list && seedlot_list){
 144                 verify_seedlot_list(check_stock_list, seedlot_list, 'check_stock_list');
 145             }
 146             if(crbd_check_stock_list && seedlot_list){
 147                 verify_seedlot_list(crbd_check_stock_list, seedlot_list, 'crbd_check_stock_list');
 148             }
 149             if(unrep_stock_list && seedlot_list){
 150                 verify_seedlot_list(unrep_stock_list, seedlot_list, 'unrep_stock_list');
 151             }
 152             if(rep_stock_list && seedlot_list){
 153                 verify_seedlot_list(rep_stock_list, seedlot_list, 'rep_stock_list');
 154             }
 155         } else {
 156             seedlot_list = undefined;
 157             seedlot_list_verified = 1;
 158             if (stock_list){
 159                 verify_stock_list(stock_list);
 160             }
 161             accession_list_seedlot_hash = {};
 162             checks_list_seedlot_hash = {};
 163             crbd_checks_list_seedlot_hash = {};
 164             unrep_list_seedlot_hash = {};
 165             rep_list_seedlot_hash = {};
 166         }
 167     });
 168
 169     $(document).on('click', 'button[name="convert_accessions_to_seedlots"]', function(){
 170         if (!stock_list_id){
 171             alert('Please first select a list of accessions above!');
 172         } else {
 173             var list = new CXGN.List();
 174             list.seedlotSearch(stock_list_id);
 175         }
 176     });
 177
 178     var stock_list_verified = 0;
 179     function verify_stock_list(stock_list) {
 180         $.ajax({
 181             type: 'POST',
 182             timeout: 3000000,
 183             url: '/ajax/trial/verify_stock_list',
 184             beforeSend: function(){
 185                 jQuery('#working_modal').modal('show');
 186             },
 187             dataType: "json",
 188             data: {
 189                 'stock_list': stock_list,
 190             },
 191             success: function (response) {
 192                 //console.log(response);
 193                 jQuery('#working_modal').modal('hide');
 194                 if (response.error) {
 195                     alert(response.error);
 196                     stock_list_verified = 0;
 197                 }
 198                 if (response.success){
 199                     stock_list_verified = 1;
 200                 }
 201             },
 202             error: function () {
 203                 jQuery('#working_modal').modal('hide');
 204                 alert('An error occurred. sorry');
 205                 stock_list_verified = 0;
 206             }
 207         });
 208     }
 209
 210     var seedlot_list_verified = 1;
 211     function verify_seedlot_list(stock_list, seedlot_list, type) {
 212         $.ajax({
 213             type: 'POST',
 214             timeout: 3000000,
 215             url: '/ajax/trial/verify_seedlot_list',
 216             beforeSend: function(){
 217                 jQuery('#working_modal').modal('show');
 218             },
 219             dataType: "json",
 220             data: {
 221                 'stock_list': stock_list,
 222                 'seedlot_list': seedlot_list,
 223             },
 224             success: function (response) {
 225                 console.log(response);
 226                 jQuery('#working_modal').modal('hide');
 227                 if (response.error) {
 228                     alert(response.error);
 229                     seedlot_list_verified = 0;
 230                 }
 231                 if (response.success){
 232                     seedlot_list_verified = 1;
 233                     if (type == 'stock_list'){
 234                         accession_list_seedlot_hash = response.seedlot_hash;
 235                     }
 236                     if (type = 'check_stock_list'){
 237                         checks_list_seedlot_hash = response.seedlot_hash;
 238                     }
 239                     if (type == 'crbd_check_stock_list'){
 240                         crbd_checks_list_seedlot_hash = response.seedlot_hash;
 241                     }
 242                     if (type == 'unrep_stock_list'){
 243                         unrep_list_seedlot_hash = response.seedlot_hash;
 244                     }
 245                     if (type == 'rep_stock_list'){
 246                         rep_list_seedlot_hash = response.seedlot_hash;
 247                     }
 248                 }
 249             },
 250             error: function () {
 251                 jQuery('#working_modal').modal('hide');
 252                 alert('An error occurred. sorry');
 253                 seedlot_list_verified = 0;
 254             }
 255         });
 256     }
 257
 258     var num_plants_per_plot = 0;
 259     var num_subplots_per_plot = 0;
 260     function generate_experimental_design() {
 261         var name = $('#new_trial_name').val();
 262         var year = $('#add_project_year').val();
 263         var desc = $('#add_project_description').val();
 264         var trial_location = $('#add_project_location').val();
 265         var block_number = $('#block_number').val();
 266         //alert(block_number);
 267         var row_number= $('#row_number').val();
 268         var row_number_per_block=$('#row_number_per_block').val();
 269         var col_number_per_block=$('#col_number_per_block').val();
 270         var col_number=$('#col_number').val();
 271        // alert(row_number);
 272         var stock_list_id = $('#select_list_list_select').val();
 273         var control_list_id = $('#list_of_checks_section_list_select').val();
 274         var control_list_id_crbd = $('#crbd_list_of_checks_section_list_select').val();
 275
 276         var control_list_crbd;
 277         if (control_list_id_crbd != ""){
 278             control_list_crbd = JSON.stringify(list.getList(control_list_id_crbd));
 279         }
 280         var stock_list;
 281         var stock_list_array;
 282         if (stock_list_id != "") {
 283             stock_list_array = list.getList(stock_list_id);
 284             stock_list = JSON.stringify(stock_list_array);
 285         }
 286         var control_list;
 287         if (control_list_id != "") {
 288             control_list = JSON.stringify(list.getList(control_list_id));
 289         }
 290
 291         var design_type = $('#select_design_method').val();
 292         if (design_type == "") {
 293             var design_type = $('#select_multi-design_method').val();
 294         }
 295
 296         var rep_count = $('#rep_count').val();
 297         var block_size = $('#block_size').val();
 298         var max_block_size = $('#max_block_size').val();
 299         var plot_prefix = $('#plot_prefix').val();
 300         var start_number = $('#start_number').val();
 301         var increment = $('#increment').val();
 302         var fieldmap_col_number = $('#fieldMap_col_number').val();
 303         var fieldmap_row_number = $('#fieldMap_row_number').val();
 304         var plot_layout_format = $('#plot_layout_format').val();
 305         var replicated_accession_list_id = $('#list_of_rep_accession_list_select').val();
 306         var unreplicated_accession_list_id = $('#list_of_unrep_accession_list_select').val();
 307         var row_in_design_number = $('#no_of_row_in_design').val();
 308         var col_in_design_number = $('#no_of_col_in_design').val();
 309         var no_of_rep_times = $('#no_of_rep_times').val();
 310         var no_of_block_sequence = $('#no_of_block_sequence').val();
 311         var no_of_sub_block_sequence = $('#no_of_sub_block_sequence').val();
 312         var num_seed_per_plot = $('#num_seed_per_plot').val();
 313
 314         var seedlot_hash_combined = {};
 315         seedlot_hash_combined = extend_obj(accession_list_seedlot_hash, checks_list_seedlot_hash);
 316         seedlot_hash_combined = extend_obj(seedlot_hash_combined, crbd_checks_list_seedlot_hash);
 317         seedlot_hash_combined = extend_obj(seedlot_hash_combined, unrep_list_seedlot_hash);
 318         seedlot_hash_combined = extend_obj(seedlot_hash_combined, rep_list_seedlot_hash);
 319         if (!jQuery.isEmptyObject(seedlot_hash_combined)){
 320             if (num_seed_per_plot == ''){
 321                 alert('Number of seeds per plot is required if you have selected a seedlot list!');
 322                 return;
 323             }
 324         }
 325
 326         var unreplicated_accession_list;
 327         if (unreplicated_accession_list_id != "") {
 328             unreplicated_accession_list = JSON.stringify(list.getList(unreplicated_accession_list_id));
 329         }
 330
 331         var replicated_accession_list;
 332         if (replicated_accession_list_id != "") {
 333             replicated_accession_list = JSON.stringify(list.getList(replicated_accession_list_id));
 334         }
 335
 336         var treatments = []
 337         if (design_type == 'splitplot'){
 338             for(var i=1; i<5; i++){
 339                 var treatment_value = $('#create_trial_with_treatment_name_input'+i).val();
 340                 if(treatment_value != ''){
 341                     treatments.push(treatment_value);
 342                 }
 343             }
 344             //console.log(treatments);
 345             var num_plants_per_treatment = $('#num_plants_per_treatment').val();
 346             num_plants_per_plot = 0;
 347             if (num_plants_per_treatment){
 348                 num_plants_per_plot = num_plants_per_treatment*treatments.length;
 349             }
 350             num_subplots_per_plot = treatments.length;
 351         }
 352
 353         var greenhouse_num_plants = [];
 354         if (stock_list_id != "" && design_type == 'greenhouse') {
 355             for (var i=0; i<stock_list_array.length; i++) {
 356                 var value = jQuery("input#greenhouse_num_plants_input_" + i).val();
 357                 if (value == '') {
 358                     value = 1;
 359                 }
 360                 greenhouse_num_plants.push(value);
 361             }
 362             //console.log(greenhouse_num_plants);
 363         }
 364
 365         //alert(design_type);
 366
 367         $.ajax({
 368             type: 'POST',
 369             timeout: 3000000,
 370             url: '/ajax/trial/generate_experimental_design',
 371             dataType: "json",
 372             beforeSend: function() {
 373                 $('#working_modal').modal("show");
 374             },
 375             data: {
 376                 'project_name': name,
 377                 'project_description': desc,
 378                 'year': year,
 379                 'trial_location': trial_location,
 380                 'stock_list': stock_list,
 381                 'control_list': control_list,
 382                 'control_list_crbd': control_list_crbd,
 383                 'design_type': design_type,
 384                 'rep_count': rep_count,
 385                 'block_number': block_number,
 386                 'row_number': row_number,
 387                 'row_number_per_block': row_number_per_block,
 388                 'col_number_per_block': col_number_per_block,
 389                 'col_number': col_number,
 390                 'block_size': block_size,
 391                 'max_block_size': max_block_size,
 392                 'plot_prefix': plot_prefix,
 393                 'start_number': start_number,
 394                 'increment': increment,
 395                 'greenhouse_num_plants': JSON.stringify(greenhouse_num_plants),
 396                 'fieldmap_col_number': fieldmap_col_number,
 397                 'fieldmap_row_number': fieldmap_row_number,
 398                 'plot_layout_format': plot_layout_format,
 399                 'treatments':treatments,
 400                 'num_plants_per_plot':num_plants_per_plot,
 401                 'row_in_design_number': row_in_design_number,
 402                 'col_in_design_number': col_in_design_number,
 403                 'no_of_rep_times': no_of_rep_times,
 404                 'no_of_block_sequence': no_of_block_sequence,
 405                 'unreplicated_accession_list': unreplicated_accession_list,
 406                 'replicated_accession_list': replicated_accession_list,
 407                 'no_of_sub_block_sequence': no_of_sub_block_sequence,
 408                 'seedlot_hash': JSON.stringify(seedlot_hash_combined),
 409                 'num_seed_per_plot': num_seed_per_plot,
 410             },
 411             success: function (response) {
 412                 $('#working_modal').modal("hide");
 413                 if (response.error) {
 414                     alert(response.error);
 415                 } else {
 416
 417                     $('#trial_design_information').html(response.design_info_view_html);
 418                     var layout_view = JSON.parse(response.design_layout_view_html);
 419                     //console.log(layout_view);
 420                     var layout_html = '';
 421                     for (var i=0; i<layout_view.length; i++) {
 422                         //console.log(layout_view[i]);
 423                         layout_html += layout_view[i] + '<br>';
 424                     }
 425                     $('#trial_design_view_layout_return').html(layout_html);
 426                     //$('#trial_design_view_layout_return').html(response.design_layout_view_html);
 427
 428                     $('#working_modal').modal("hide");
 429                     $('#trial_design_confirm').modal("show");
 430                     design_json = response.design_json;
 431                 }
 432             },
 433             error: function () {
 434                 $('#working_modal').modal("hide");
 435                 alert('An error occurred. sorry.');
 436             }
 437        });
 438     }
 439
 440     //When the user submits the form, input validation happens here before proceeding to design generation
 441     $(document).on('click', '#new_trial_submit', function () {
 442         var name = $('#new_trial_name').val();
 443         var year = $('#add_project_year').val();
 444         var desc = $('textarea#add_project_description').val();
 445         var method_to_use = $('.format_type:checked').val();
 446         if (name == '') {
 447             alert('Trial name required');
 448             return;
 449         }
 450         if (year === '' || desc === '') {
 451             alert('Year and description are required.');
 452             return;
 453         }
 454         if (stock_list_verified == 1 && seedlot_list_verified == 1){
 455             if (method_to_use == "empty") {
 456                 alert('adding a project');
 457                 save_project_info(name, year, desc);
 458             }
 459             if (method_to_use == "create_with_design_tool") {
 460                 generate_experimental_design();
 461             }
 462         } else {
 463             alert('Accession list or seedlot list is not valid!');
 464             return;
 465         }
 466     });
 467
 468     $(document).on('change', '#select_design_method', function () {
 469         //$("#add_project_dialog").dialog("option", "height","auto");
 470
 471         var design_method = $("#select_design_method").val();
 472         if (design_method == "CRD") {
 473             $("#trial_design_more_info").show();
 474             $("#trial_multi-design_more_info").show();
 475             $("#FieldMap").show();
 476             $("#prephelp").hide();
 477             //$("#fieldmap_options").show();
 478             //$("#add_project_dialog").dialog("option", "height","auto");
 479             $("#show_list_of_accession_section").show();
 480             $("#show_list_of_unrep_accession").hide();
 481             $("#show_list_of_rep_accession").hide();
 482             $("#show_no_of_row_in_design").hide();
 483             $("#show_no_of_col_in_design").hide();
 484             $("#show_no_of_rep_times").hide();
 485             $("#show_no_of_block_sequence").hide();
 486             $("#show_no_of_sub_block_sequence").hide();
 487             $("#show_list_of_checks_section").hide();
 488             $("#crbd_show_list_of_checks_section").show();
 489             $("#rep_count_section").show();
 490             $("#block_number_section").hide();
 491             $("#block_size_section").hide();
 492             $("#max_block_section").hide();
 493             $("#row_number_section").hide();
 494             $("#row_number_per_block_section").hide();
 495             $("#col_number_per_block_section").hide();
 496             $("#col_number_section").hide();
 497             $("#row_number_per_block_section").hide();
 498             $("#other_parameter_section").hide();
 499             $("#design_info").show();
 500             $("#greenhouse_num_plants_per_accession_section").hide();
 501             $('#greenhouse_default_num_plants_per_accession').hide();
 502             $("#create_trial_with_treatment_section").hide();
 503             $("#num_plants_per_plot_section").hide();
 504         } else if (design_method == "RCBD") {
 505             $("#trial_design_more_info").show();
 506             $("#trial_multi-design_more_info").show();
 507             $("#FieldMap").show();
 508             $("#prephelp").hide();
 509             //$("#add_project_dialog").dialog("option", "height","auto");
 510             $("#show_list_of_accession_section").show();
 511             $("#show_list_of_unrep_accession").hide();
 512             $("#show_list_of_rep_accession").hide();
 513             $("#show_no_of_row_in_design").hide();
 514             $("#show_no_of_col_in_design").hide();
 515             $("#show_no_of_rep_times").hide();
 516             $("#show_no_of_block_sequence").hide();
 517             $("#show_no_of_sub_block_sequence").hide();
 518             $("#crbd_show_list_of_checks_section").show();
 519             $("#show_list_of_checks_section").hide();
 520             $("#rep_count_section").hide();
 521             $("#block_number_section").show();
 522             $("#block_size_section").hide();
 523             $("#max_block_size_section").hide();
 524             $("#row_number_section").hide();
 525             $("#row_number_per_block_section").hide();
 526             $("#col_number_per_block_section").hide();
 527             $("#col_number_section").hide();
 528             $("#row_number_per_block_section").hide();
 529             $("#other_parameter_section").hide();
 530             $("#design_info").show();
 531             $("#greenhouse_num_plants_per_accession_section").hide();
 532             $('#greenhouse_default_num_plants_per_accession').hide();
 533             $("#create_trial_with_treatment_section").hide();
 534             $("#num_plants_per_plot_section").hide();
 535         } else if (design_method == "Alpha") {
 536             $("#FieldMap").show();
 537             $("#prephelp").hide();
 538             $("#trial_design_more_info").show();
 539             $("#trial_multi-design_more_info").show();
 540             //$("#add_project_dialog").dialog("option", "height","auto");
 541             $("#show_list_of_accession_section").show();
 542             $("#show_list_of_unrep_accession").hide();
 543             $("#show_list_of_rep_accession").hide();
 544             $("#show_no_of_row_in_design").hide();
 545             $("#show_no_of_col_in_design").hide();
 546             $("#show_no_of_rep_times").hide();
 547             $("#show_no_of_block_sequence").hide();
 548             $("#show_no_of_sub_block_sequence").hide();
 549             $("#crbd_show_list_of_checks_section").show();
 550             $("#show_list_of_checks_section").hide();
 551             $("#rep_count_section").show();
 552             $("#block_number_section").hide();
 553             $("#block_size_section").show();
 554             $("#max_block_size_section").hide();
 555             $("#row_number_section").hide();
 556             $("#row_number_per_block_section").hide();
 557             $("#col_number_per_block_section").hide();
 558             $("#col_number_section").hide();
 559             $("#row_number_per_block_section").hide();
 560             $("#other_parameter_section").hide();
 561             $("#design_info").show();
 562             $("#greenhouse_num_plants_per_accession_section").hide();
 563             $('#greenhouse_default_num_plants_per_accession').hide();
 564             $("#create_trial_with_treatment_section").hide();
 565             $("#num_plants_per_plot_section").hide();
 566         } else if (design_method == "Lattice") {
 567             $("#FieldMap").show();
 568             $("#prephelp").hide();
 569             $("#trial_design_more_info").show();
 570             $("#trial_multi-design_more_info").show();
 571             $("#crbd_show_list_of_checks_section").show();
 572             $("#show_list_of_accession_section").show();
 573             $("#show_list_of_unrep_accession").hide();
 574             $("#show_list_of_rep_accession").hide();
 575             $("#show_no_of_row_in_design").hide();
 576             $("#show_no_of_col_in_design").hide();
 577             $("#show_no_of_rep_times").hide();
 578             $("#show_no_of_block_sequence").hide();
 579             $("#show_no_of_sub_block_sequence").hide();
 580             $("#show_list_of_checks_section").hide();
 581             $("#rep_count_section").show();
 582             $("#block_number_section").hide();
 583             $("#block_size_section").hide();
 584             $("#max_block_size_section").hide();
 585             $("#row_number_section").hide();
 586             $("#row_number_per_block_section").hide();
 587             $("#col_number_per_block_section").hide();
 588             $("#col_number_section").hide();
 589             $("#row_number_per_block_section").hide();
 590             $("#other_parameter_section").hide();
 591             $("#design_info").show();
 592             $("#greenhouse_num_plants_per_accession_section").hide();
 593             $('#greenhouse_default_num_plants_per_accession').hide();
 594             $("#create_trial_with_treatment_section").hide();
 595             $("#num_plants_per_plot_section").hide();
 596         } else if (design_method == "Augmented") {
 597             $("#FieldMap").hide();
 598             $("#prephelp").hide();
 599             $("#trial_design_more_info").show();
 600             $("#trial_multi-design_more_info").show();
 601             //$("#add_project_dialog").dialog("option", "height","auto");
 602             $("#show_list_of_checks_section").show();
 603             $("#crbd_show_list_of_checks_section").hide();
 604             $("#show_list_of_accession_section").show();
 605             $("#show_list_of_unrep_accession").hide();
 606             $("#show_list_of_rep_accession").hide();
 607             $("#show_no_of_row_in_design").hide();
 608             $("#show_no_of_col_in_design").hide();
 609             $("#show_no_of_rep_times").hide();
 610             $("#show_no_of_block_sequence").hide();
 611             $("#show_no_of_sub_block_sequence").hide();
 612             $("#rep_count_section").hide();
 613             $("#block_number_section").hide();
 614             $("#block_size_section").hide();
 615             $("#max_block_size_section").show();
 616             $("#row_number_section").hide();
 617             $("#row_number_per_block_section").hide();
 618             $("#col_number_per_block_section").hide();
 619             $("#col_number_section").hide();
 620             $("#row_number_per_block_section").hide();
 621             $("#other_parameter_section").hide();
 622             $("#design_info").show();
 623             $("#greenhouse_num_plants_per_accession_section").hide();
 624             $('#greenhouse_default_num_plants_per_accession').hide();
 625             $("#create_trial_with_treatment_section").hide();
 626             $("#num_plants_per_plot_section").hide();
 627         } else if (design_method == "") {
 628             $("#FieldMap").hide();
 629             $("#prephelp").hide();
 630             //$("#add_project_dialog").dialog("option", "height","auto");
 631             $("#show_list_of_checks_section").hide();
 632             $("#crbd_show_list_of_checks_section").hide();
 633             $("#show_list_of_accession_section").hide();
 634             $("#show_list_of_unrep_accession").hide();
 635             $("#show_list_of_rep_accession").hide();
 636             $("#show_no_of_row_in_design").hide();
 637             $("#show_no_of_col_in_design").hide();
 638             $("#show_no_of_rep_times").hide();
 639             $("#show_no_of_block_sequence").hide();
 640             $("#show_no_of_sub_block_sequence").hide();
 641             $("#trial_design_more_info").hide();
 642             $("#trial_multi-design_more_info").hide();
 643             $("#rep_count_section").hide();
 644             $("#block_number_section").hide();
 645             $("#block_size_section").hide();
 646             $("#max_block_size_section").hide();
 647             $("#row_number_section").hide();
 648             $("#row_number_per_block_section").hide();
 649             $("#col_number_per_block_section").hide();
 650             $("#col_number_section").hide();
 651             $("#row_number_per_block_section").show();
 652             $("#other_parameter_section").hide();
 653             $("#other_parameter_section2").hide();
 654             $("#design_info").show();
 655             $("#greenhouse_num_plants_per_accession_section").hide();
 656             $('#greenhouse_default_num_plants_per_accession').hide();
 657             $("#create_trial_with_treatment_section").hide();
 658             $("#num_plants_per_plot_section").hide();
 659         }
 660
 661         else if (design_method == "MAD") {
 662             $("#FieldMap").hide();
 663             $("#prephelp").hide();
 664             $("#trial_design_more_info").show();
 665             $("#trial_multi-design_more_info").show();
 666             //$("#add_project_dialog").dialog("option", "height","auto");
 667             $("#show_list_of_checks_section").show();
 668             $("#crbd_show_list_of_checks_section").hide();
 669             $("#show_list_of_accession_section").show();
 670             $("#show_list_of_unrep_accession").hide();
 671             $("#show_list_of_rep_accession").hide();
 672             $("#show_no_of_row_in_design").hide();
 673             $("#show_no_of_col_in_design").hide();
 674             $("#show_no_of_rep_times").hide();
 675             $("#show_no_of_block_sequence").hide();
 676             $("#show_no_of_sub_block_sequence").hide();
 677             $("#rep_count_section").hide();
 678             $("#row_number_section").show();
 679             $("#block_number_section").hide();
 680             $("#block_size_section").hide();
 681             $("#row_number_per_block_section").show();
 682             $("#col_number_per_block_section").show();
 683             $("#col_number_section").show();
 684             $("#max_block_size_section").hide();
 685             $("#row_number_per_block_section").show();
 686             $("#other_parameter_section").show();
 687             $("#design_info").show();
 688
 689             $("#show_other_parameter_options").click(function () {
 690                 if ($('#show_other_parameter_options').is(':checked')) {
 691                     $("#other_parameter_options").show();
 692                     //$("#add_project_dialog").dialog("option", "height","auto");
 693                 }
 694                 else {
 695                     $("#other_parameter_options").hide();
 696                     //$("#add_project_dialog").dialog("option", "height","auto");
 697                 }
 698             });
 699             $("#greenhouse_num_plants_per_accession_section").hide();
 700             $('#greenhouse_default_num_plants_per_accession').hide();
 701             $("#create_trial_with_treatment_section").hide();
 702             $("#num_plants_per_plot_section").hide();
 703         }
 704
 705         else if (design_method == 'greenhouse') {
 706             $("#FieldMap").hide();
 707             $("#prephelp").hide();
 708             $("#trial_design_more_info").show();
 709             $("#trial_multi-design_more_info").show();
 710             $("#show_list_of_checks_section").hide();
 711             $("#crbd_show_list_of_checks_section").hide();
 712             $("#show_list_of_accession_section").show();
 713             $("#show_list_of_unrep_accession").hide();
 714             $("#show_list_of_rep_accession").hide();
 715             $("#show_no_of_row_in_design").hide();
 716             $("#show_no_of_col_in_design").hide();
 717             $("#show_no_of_rep_times").hide();
 718             $("#show_no_of_block_sequence").hide();
 719             $("#show_no_of_sub_block_sequence").hide();
 720             $("#rep_count_section").hide();
 721             $("#block_number_section").hide();
 722             $("#block_size_section").hide();
 723             $("#max_block_section").hide();
 724             $("#row_number_section").hide();
 725             $("#row_number_per_block_section").hide();
 726             $("#col_number_per_block_section").hide();
 727             $("#col_number_section").hide();
 728             $("#row_number_per_block_section").hide();
 729             $("#other_parameter_section").hide();
 730             $("#design_info").hide();
 731             $('#greenhouse_default_num_plants_per_accession').show();
 732             $("#greenhouse_num_plants_per_accession_section").show();
 733             $('#greenhouse_default_num_plants_per_accession').show();
 734             $("#create_trial_with_treatment_section").hide();
 735             $("#num_plants_per_plot_section").hide();
 736             greenhouse_show_num_plants_section();
 737         }
 738
 739         else if (design_method == 'splitplot') {
 740             $("#FieldMap").show();
 741             $("#prephelp").hide();
 742             $("#trial_design_more_info").show();
 743             $("#trial_multi-design_more_info").show();
 744             $("#show_list_of_checks_section").hide();
 745             $("#crbd_show_list_of_checks_section").hide();
 746             $("#show_list_of_accession_section").show();
 747             $("#show_list_of_unrep_accession").hide();
 748             $("#show_list_of_rep_accession").hide();
 749             $("#show_no_of_row_in_design").hide();
 750             $("#show_no_of_col_in_design").hide();
 751             $("#show_no_of_rep_times").hide();
 752             $("#show_no_of_block_sequence").hide();
 753             $("#show_no_of_sub_block_sequence").hide();
 754             $("#rep_count_section").hide();
 755             $("#block_number_section").show();
 756             $("#block_size_section").hide();
 757             $("#max_block_section").hide();
 758             $("#row_number_section").hide();
 759             $("#row_number_per_block_section").hide();
 760             $("#col_number_per_block_section").hide();
 761             $("#col_number_section").hide();
 762             $("#row_number_per_block_section").hide();
 763             $("#other_parameter_section").hide();
 764             $("#design_info").show();
 765             $('#greenhouse_default_num_plants_per_accession').hide();
 766             $("#greenhouse_num_plants_per_accession_section").hide();
 767             $('#greenhouse_default_num_plants_per_accession').hide();
 768             $("#create_trial_with_treatment_section").show();
 769             $("#num_plants_per_plot_section").show();
 770         }
 771         else if (design_method == 'p-rep') {
 772             $("#FieldMap").hide();
 773             $("#trial_design_more_info").show();
 774             $("#trial_multi-design_more_info").show();
 775             $("#prephelp").show();
 776             $("#show_list_of_accession_section").hide();
 777             $("#show_list_of_checks_section").hide();
 778             $("#show_list_of_unrep_accession").show();
 779             $("#show_list_of_rep_accession").show();
 780             $("#show_no_of_row_in_design").show();
 781             $("#show_no_of_col_in_design").show();
 782             $("#show_no_of_rep_times").show();
 783             $("#show_no_of_block_sequence").show();
 784             $("#show_no_of_sub_block_sequence").show();
 785             $("#crbd_show_list_of_checks_section").hide();
 786             $("#rep_count_section").hide();
 787             $("#block_number_section").hide();
 788             $("#block_size_section").hide();
 789             $("#max_block_section").hide();
 790             $("#row_number_section").hide();
 791             $("#row_number_per_block_section").hide();
 792             $("#col_number_per_block_section").hide();
 793             $("#col_number_section").hide();
 794             $("#row_number_per_block_section").hide();
 795             $("#other_parameter_section").hide();
 796             $("#design_info").hide();
 797             $('#greenhouse_default_num_plants_per_accession').hide();
 798             $("#greenhouse_num_plants_per_accession_section").hide();
 799             $('#greenhouse_default_num_plants_per_accession').hide();
 800             $("#create_trial_with_treatment_section").hide();
 801             $("#num_plants_per_plot_section").hide();
 802         }
 803
 804         else {
 805             alert("Unsupported design method");
 806         }
 807     });
 808
 809     jQuery(document).on('change', '#select_list_list_select', function() {
 810         if (jQuery("#select_design_method").val() == 'greenhouse') {
 811             greenhouse_show_num_plants_section();
 812         }
 813     });
 814     jQuery(document).on('keyup', '#greenhouse_default_num_plants_per_accession_val', function() {
 815         if (jQuery("#select_design_method").val() == 'greenhouse') {
 816             greenhouse_show_num_plants_section();
 817         }
 818     });
 819
 820     jQuery(document).on('keyup', '#greenhouse_default_num_plants_per_accession_val', function() {
 821         if (jQuery("#select_design_method").val() == 'greenhouse') {
 822             greenhouse_show_num_plants_section();
 823         }
 824     });
 825
 826     $("#show_plot_naming_options").click(function () {
 827         if ($('#show_plot_naming_options').is(':checked')) {
 828             $("#plot_naming_options").show();
 829             //$("#add_project_dialog").dialog("option", "height","auto");
 830         }
 831         else {
 832             $("#plot_naming_options").hide();
 833             //$("#add_project_dialog").dialog("option", "height","auto");
 834         }
 835     });
 836
 837     $("#show_field_map_options").click(function () {
 838       if ($('#show_field_map_options').is(':checked')) {
 839         $("#field_map_options").show();
 840       }
 841       else {
 842         $("#field_map_options").hide();
 843       }
 844     });
 845
 846     function save_experimental_design(design_json) {
 847         var list = new CXGN.List();
 848         var name = jQuery('#new_trial_name').val();
 849         var year = jQuery('#add_project_year').val();
 850         var desc = jQuery('#add_project_description').val();
 851         var trial_location = jQuery('#add_project_location').val();
 852         var block_number = jQuery('#block_number').val();
 853         var stock_list_id = jQuery('#select_list_list_select').val();
 854         var control_list_id = jQuery('#list_of_checks_section_list_select').val();
 855         var stock_list;
 856         if (stock_list_id != "") {
 857             stock_list_array = list.getList(stock_list_id);
 858             stock_list = JSON.stringify(list.getList(stock_list_id));
 859         }
 860         var control_list;
 861         if (control_list_id != "") {
 862            control_list = JSON.stringify(list.getList(control_list_id));
 863         }
 864         var design_type = jQuery('#select_design_method').val();
 865         if (design_type == "") {
 866             var design_type = jQuery('#select_multi-design_method').val();
 867         }
 868         var greenhouse_num_plants = [];
 869         if (stock_list_id != "" && design_type == 'greenhouse') {
 870             for (var i=0; i<stock_list_array.length; i++) {
 871                 var value = jQuery("input#greenhouse_num_plants_input_" + i).val();
 872                 if (value == '') {
 873                     value = 1;
 874                 }
 875                 greenhouse_num_plants.push(value);
 876             }
 877             //console.log(greenhouse_num_plants);
 878         }
 879
 880         //alert(design_type);
 881
 882         var rep_count = jQuery('#rep_count').val();
 883         var block_size = jQuery('#block_size').val();
 884         var max_block_size = jQuery('#max_block_size').val();
 885         var plot_prefix = jQuery('#plot_prefix').val();
 886         var start_number = jQuery('#start_number').val();
 887         var increment = jQuery('#increment').val();
 888         var breeding_program_name = jQuery('#select_breeding_program').val();
 889         var fieldmap_col_number = jQuery('#fieldMap_col_number').val();
 890         var fieldmap_row_number = jQuery('#fieldMap_row_number').val();
 891         var plot_layout_format = jQuery('#plot_layout_format').val();
 892         var trial_type = jQuery('#add_project_type').val();
 893
 894         jQuery.ajax({
 895            type: 'POST',
 896            timeout: 3000000,
 897            url: '/ajax/trial/save_experimental_design',
 898            dataType: "json",
 899            beforeSend: function() {
 900                jQuery('#working_modal').modal("show");
 901            },
 902            data: {
 903                 'project_name': name,
 904                 'project_description': desc,
 905                 //'trial_name': trial_name,
 906                 'year': year,
 907                 'trial_type': trial_type,
 908                 'trial_location': trial_location,
 909                 'stock_list': stock_list,
 910                 'control_list': control_list,
 911                 'design_type': design_type,
 912                 'rep_count': rep_count,
 913                 'block_number': block_number,
 914                 'block_size': block_size,
 915                 'max_block_size': max_block_size,
 916                 'plot_prefix': plot_prefix,
 917                 'start_number': start_number,
 918                 'increment': increment,
 919                 'design_json': design_json,
 920                 'breeding_program_name': breeding_program_name,
 921                 'greenhouse_num_plants': JSON.stringify(greenhouse_num_plants),
 922                 'fieldmap_col_number': fieldmap_col_number,
 923                 'fieldmap_row_number': fieldmap_row_number,
 924                 'plot_layout_format': plot_layout_format,
 925                 'has_plant_entries': num_plants_per_plot,
 926                 'has_subplot_entries': num_subplots_per_plot,
 927             },
 928             success: function (response) {
 929                 if (response.error) {
 930                     jQuery('#working_modal').modal("hide");
 931                     alert(response.error);
 932                     jQuery('#trial_design_confirm').modal("hide");
 933                 } else {
 934                     //alert('Trial design saved');
 935                     jQuery('#working_modal').modal("hide");
 936                     jQuery('#trial_saved_dialog_message').modal("show");
 937                 }
 938             },
 939             error: function () {
 940                 jQuery('#trial_saving_dialog').dialog("close");
 941                 alert('An error occurred saving the trial.');
 942                 jQuery('#trial_design_confirm').dialog("close");
 943             }
 944         });
 945     }
 946
 947     jQuery('#new_trial_confirm_submit').click(function () {
 948             save_experimental_design(design_json);
 949     });
 950
 951     $('#view_trial_layout_button').click(function () {
 952         $('#trial_design_view_layout').modal("show");
 953     });
 954
 955     $('#redo_trial_layout_button').click(function () {
 956         generate_experimental_design();
 957         $('#trial_design_view_layout').modal("show");
 958     });
 959
 960     function open_project_dialog() {
 961         $('#add_project_dialog').modal("show");
 962
 963         //add lists to the list select and list of checks select dropdowns.
 964     document.getElementById("select_list").innerHTML = list.listSelect("select_list", [ 'accessions' ], '', 'refresh');
 965     document.getElementById("select_seedlot_list").innerHTML = list.listSelect("select_seedlot_list", [ 'seedlots' ], 'none', 'refresh');
 966     document.getElementById("list_of_checks_section").innerHTML = list.listSelect("list_of_checks_section", [ 'accessions' ], '', 'refresh');
 967
 968     //add lists to the list select and list of checks select dropdowns for CRBD.
 969     document.getElementById("crbd_list_of_checks_section").innerHTML = list.listSelect("crbd_list_of_checks_section", [ 'accessions' ], "select optional check list", 'refresh');
 970     document.getElementById("list_of_unrep_accession").innerHTML = list.listSelect("list_of_unrep_accession", [ 'accessions' ], "Required: e.g. 200", 'refresh');
 971     document.getElementById("list_of_rep_accession").innerHTML = list.listSelect("list_of_rep_accession", [ 'accessions' ], "Required: e.g. 119", 'refresh');
 972
 973         //add a blank line to location select dropdown that dissappears when dropdown is opened
 974         $("#add_project_location").prepend("<option value=''></option>").val('');
 975         $("#add_project_location").one('mousedown', function () {
 976             $("option:first", this).remove();
 977         });
 978
 979         //add a blank line to list select dropdown that dissappears when dropdown is opened
 980         $("#select_list_list_select").prepend("<option value=''></option>").val('');
 981         $("#select_list_list_select").one('mousedown', function () {
 982             $("option:first", this).remove();
 983         });
 984
 985     //add a blank line to list select dropdown that dissappears when dropdown is opened
 986         $("#select_seedlot_list_list_select").prepend("<option value=''></option>").val('');
 987         $("#select_seedlot_list_list_select").one('mousedown', function () {
 988             $("option:first", this).remove();
 989         });
 990
 991
 992         //add a blank line to list of checks select dropdown that dissappears when dropdown is opened
 993         $("#list_of_checks_section_list_select").prepend("<option value=''></option>").val('');
 994         $("#list_of_checks_section_list_select").one('mousedown', function () {
 995             $("option:first", this).remove();
 996         });
 997
 998   $("#crbd_list_of_checks_section_list_select").prepend("<option value=''></option>").val('');
 999   $("#crbd_list_of_checks_section_list_select").one('mousedown', function () {
1000             $("option:first", this).remove();
1001   });
1002
1003         //add a blank line to design method select dropdown that dissappears when dropdown is opened
1004         $("#select_design_method").prepend("<option value=''></option>").val('');
1005         $("#select_design_method").one('mousedown', function () {
1006             $("option:first", this).remove();
1007             $("#trial_design_more_info").show();
1008             //$("#add_project_dialog").dialog("option", "height","auto");
1009             //trigger design method change events in case the first one is selected after removal of the first blank select item
1010             $("#select_design_method").change();
1011         });
1012
1013         //reset previous selections
1014         $("#select_design_method").change();
1015
1016         var method_to_use = $('.format_type:checked').val();
1017         if (method_to_use == "empty") {
1018             $("#trial_design_info").hide();
1019             $("#trial_design_more_info").hide();
1020             $("#get_file_upload_data").hide();
1021         }
1022         if (method_to_use == "create_with_upload") {
1023             $("#get_file_upload_data").show();
1024             $("#trial_design_info").hide();
1025             $("#trial_design_more_info").hide();
1026         } else {
1027             $("#get_file_upload_data").hide();
1028         }
1029         if (method_to_use == "create_with_design_tool") {
1030             $("#trial_design_info").show();
1031         } else {
1032             $("trial_design_info").hide();
1033         }
1034     }
1035
1036      $('#add_project_link').click(function () {
1037          get_select_box('years', 'add_project_year', {'auto_generate': 1 });
1038          get_select_box('trial_types', 'add_project_type', {'empty':1} );
1039          open_project_dialog();
1040      });
1041
1042     jQuery('button[name="new_trial_add_treatments"]').click(function(){
1043         jQuery('#trial_design_add_treatments').modal('show');
1044     });
1045
1046     jQuery('#new_trial_add_treatments_continue').click(function(){
1047         var treatment_name = jQuery('#new_treatment_name').val();
1048         var html = "";
1049         var design_array = JSON.parse(design_json);
1050         for (var i=0; i<design_array.length; i++){
1051             html += "<table class='table table-hover'><thead><tr><th>plot_name</th><th>accession</th><th>plot_number</th><th>block_number</th><th>rep_number</th><th>is_a_control</th><th>row_number</th><th>col_number</th><th class='table-success'>"+treatment_name+" [Select all <input type='checkbox' name='add_trial_treatment_select_all' />]</th></tr></thead><tbody>";
1052             var design_hash = JSON.parse(design_array[i]);
1053             //console.log(design_hash);
1054             for (var key in design_hash){
1055                 if (key != 'treatments'){
1056                     var plot_obj = design_hash[key];
1057                     html += "<tr><td>"+plot_obj.plot_name+"</td><td>"+plot_obj.stock_name+"</td><td>"+plot_obj.plot_number+"</td><td>"+plot_obj.block_number+"</td><td>"+plot_obj.rep_number+"</td><td>"+plot_obj.is_a_control+"</td><td>"+plot_obj.row_number+"</td><td>"+plot_obj.col_number+"</td><td><input data-plot_name='"+plot_obj.plot_name+"' data-trial_index='"+i+"' data-trial_treatment='"+treatment_name+"'  data-plant_names='"+JSON.stringify(plot_obj.plant_names)+"' data-subplot_names='"+JSON.stringify(plot_obj.subplots_names)+"' type='checkbox' name='add_trial_treatment_input'/></td></tr>";
1058                 }
1059             }
1060             html += "</tbody></table>";
1061         }
1062         html += "<br/><br/>";
1063         jQuery('#trial_design_add_treatment_select_html').html(html);
1064         jQuery('#trial_design_add_treatment_select').modal('show');
1065     });
1066
1067     jQuery(document).on('change', 'input[name="add_trial_treatment_select_all"]', function(){
1068         if(jQuery(this).is(":checked")){
1069             jQuery('input[name="add_trial_treatment_input"]').each(function(){
1070                 jQuery(this).prop("checked", true);
1071             });
1072         } else {
1073             jQuery('input[name="add_trial_treatment_input"]').each(function(){
1074                 jQuery(this).prop("checked", false);
1075             });
1076         }
1077     });
1078
1079     jQuery('#new_trial_add_treatments_submit').click(function(){
1080         var trial_treatments = [];
1081         jQuery('input[name="add_trial_treatment_input"]').each(function() {
1082             if (this.checked){
1083                 var plot_name = jQuery(this).data('plot_name');
1084                 var plant_names = jQuery(this).data('plant_names');
1085                 var subplot_names = jQuery(this).data('subplot_names');
1086                 var trial_index = jQuery(this).data('trial_index');
1087                 var trial_treatment = jQuery(this).data('trial_treatment');
1088                 if (trial_index in trial_treatments){
1089                     var trial = trial_treatments[trial_index];
1090                     if (trial_treatment in trial){
1091                         trial[trial_treatment].push(plot_name);
1092                     } else {
1093                         trial[trial_treatment] = [plot_name];
1094                     }
1095                     if (plant_names != 'undefined'){
1096                         for(var i=0; i<plant_names.length; i++){
1097                             trial[trial_treatment].push(plant_names[i]);
1098                         }
1099                     }
1100                     if (subplot_names != 'undefined'){
1101                         for(var i=0; i<subplot_names.length; i++){
1102                             trial[trial_treatment].push(subplot_names[i]);
1103                         }
1104                     }
1105                     trial_treatments[trial_index] = trial;
1106                 } else {
1107                     obj = {};
1108                     obj[trial_treatment] = [plot_name];
1109                     if (plant_names != 'undefined'){
1110                         for(var i=0; i<plant_names.length; i++){
1111                             obj[trial_treatment].push(plant_names[i]);
1112                         }
1113                     }
1114                     if (subplot_names != 'undefined'){
1115                         for(var i=0; i<subplot_names.length; i++){
1116                             obj[trial_treatment].push(subplot_names[i]);
1117                         }
1118                     }
1119                     trial_treatments[trial_index] = obj;
1120                 }
1121             }
1122         });
1123
1124         var new_design_array = [];
1125         var design_array = JSON.parse(design_json);
1126         for (var i=0; i<design_array.length; i++){
1127             var design_hash = JSON.parse(design_array[i]);
1128             if ('treatments' in design_hash){
1129                 treatment_obj = design_hash['treatments'];
1130                 new_treatments = trial_treatments[i];
1131                 for (var key in new_treatments){
1132                     treatment_obj[key] = new_treatments[key];
1133                 }
1134                 design_hash['treatments'] = treatment_obj;
1135             } else {
1136                 design_hash['treatments'] = trial_treatments[i];
1137             }
1138             new_design_array[i] = JSON.stringify(design_hash);
1139         }
1140         design_json = JSON.stringify(new_design_array);
1141
1142         var html = '';
1143         for (var i=0; i<new_design_array.length; i++){
1144             var design_hash = JSON.parse(new_design_array[i]);
1145             var treatments = design_hash['treatments'];
1146             //html += "Trial "+i+"<br/>";
1147             for (var key in treatments){
1148                 html += "Treatment: <b>"+key+"</b> Plots: ";
1149                 var plot_array = treatments[key];
1150                 html += plot_array.join(', ') + "<br/>";
1151             }
1152         }
1153         jQuery('#trial_design_confirm_treatments').html(html);
1154         jQuery('#trial_design_add_treatment_select').modal('hide');
1155         jQuery('#trial_design_add_treatments').modal('hide');
1156     });
1157
1158 });
1159
1160 function greenhouse_show_num_plants_section(){
1161     var list = new CXGN.List();
1162     var stock_list_id = jQuery('#select_list_list_select').val();
1163     var default_num = jQuery('#greenhouse_default_num_plants_per_accession_val').val();
1164     if (stock_list_id != "") {
1165         stock_list = list.getList(stock_list_id);
1166         //console.log(stock_list);
1167         var html = '<form class="form-horizontal">';
1168         for (var i=0; i<stock_list.length; i++){
1169             html = html + '<div class="form-group"><label class="col-sm-9 control-label">' + stock_list[i] + ': </label><div class="col-sm-3"><input class="form-control" id="greenhouse_num_plants_input_' + i + '" type="text" placeholder="'+default_num+'" value="'+default_num+'" /></div></div>';
1170         }
1171         html = html + '</form>';
1172         jQuery("#greenhouse_num_plants_per_accession").empty().html(html);
1173     }
1174 }
1175
1176 function extend_obj(obj, src) {
1177     for (var key in src) {
1178         if (src.hasOwnProperty(key)) obj[key] = src[key];
1179     }
1180     return obj;
1181 }