js/CXGN/BreedersToolbox/Crosses.js

   1 /*jslint browser: true, devel: true */
   2
   3 /**
   4
   5 =head1 Crosses.js
   6
   7 Dialogs for adding and uploading crosses
   8
   9 =head1 AUTHOR
  10
  11 Jeremy D. Edwards <jde22@cornell.edu>
  12
  13 =cut
  14
  15 */
  16
  17 var $j = jQuery.noConflict();
  18
  19 jQuery(document).ready(function($) {
  20
  21     $('#program').change(function(){
  22         get_select_box('folders', 'add_cross_folder_select_div', {
  23             'name': 'add_cross_folder_id',
  24             'id': 'add_cross_folder_id',
  25             'folder_for_crosses' : true,
  26             'empty': 1,
  27             'breeding_program_id': jQuery('#program').val()
  28         });
  29     });
  30
  31     $("#create_cross_link").click(function() {
  32
  33         $("#cross_type_info").click(function() {
  34             $("#cross_type_dialog").modal("show");
  35         });
  36
  37         get_select_box('folders', 'add_cross_folder_select_div', {
  38             'name': 'add_cross_folder_id',
  39             'id': 'add_cross_folder_id',
  40             'folder_for_crosses' : true,
  41             'empty': 1,
  42             'breeding_program_id': jQuery('#program').val()
  43         });
  44
  45         var lo = new CXGN.List();
  46         $('#polycross_accession_list').html(lo.listSelect('polycross_accessions', ['accessions'], 'select'));
  47         $('#reciprocal_accession_list').html(lo.listSelect('reciprocal_accessions', ['accessions'], 'select'));
  48         $('#maternal_accession_list').html(lo.listSelect('maternal_accessions', ['accessions'], 'select'));
  49         $('#paternal_accession_list').html(lo.listSelect('paternal_accessions', ['accessions'], 'select'));
  50
  51         $("#create_cross").modal("show");
  52
  53         $("#cross_type").change(function() { // show cross_type specific inputs depending on cross type selected
  54             $("#get_maternal_parent").toggle($("#cross_type").val() == "biparental");
  55             $("#get_paternal_parent").toggle($("#cross_type").val() == "biparental");
  56             $("#get_selfed_parent").toggle($("#cross_type").val() == "self");
  57             $("#get_open_maternal_parent").toggle($("#cross_type").val() == "open");
  58             $("#get_open_paternal_population").toggle($("#cross_type").val() == "open");
  59             $("#get_bulk_maternal_population").toggle($("#cross_type").val() == "bulk");
  60             $("#get_bulk_paternal_parent").toggle($("#cross_type").val() == "bulk");
  61             $("#get_bulk_selfed_population").toggle($("#cross_type").val() == "bulk_self");
  62             $("#get_bulk_open_maternal_population").toggle($("#cross_type").val() == "bulk_open");
  63             $("#get_bulk_open_paternal_population").toggle($("#cross_type").val() == "bulk_open");
  64             $("#get_doubled_haploid_parent").toggle($("#cross_type").val() == "doubled_haploid");
  65             $("#polycross_accessions").toggle($("#cross_type").val() == "polycross");
  66             $("#reciprocal_accessions").toggle($("#cross_type").val() == "reciprocal");
  67             $("#maternal_accessions").toggle($("#cross_type").val() == "multicross");
  68             $("#paternal_accessions").toggle($("#cross_type").val() == "multicross");
  69         });
  70
  71         $('input[id*="_parent"]').autocomplete({
  72             source: '/ajax/stock/accession_autocomplete'
  73         });
  74
  75         $('input[id*="_population"]').autocomplete({
  76             source: '/ajax/stock/stock_autocomplete'
  77         });
  78
  79         $("#flower_number_checkbox").change(function() {
  80             $("#get_flower_number").toggle(this.checked); // show if it is checked, otherwise hide
  81         });
  82
  83         $("#fruit_number_checkbox").change(function() {
  84             $("#get_fruit_number").toggle(this.checked); // show if it is checked, otherwise hide
  85         });
  86
  87         $("#use_folders_checkbox").change(function() {
  88             $("#folder_section").toggle(this.checked); // show if it is checked, otherwise hide
  89         });
  90
  91         $("#seed_number_checkbox").change(function() {
  92             $("#get_seed_number").toggle(this.checked); // show if it is checked, otherwise hide
  93         });
  94
  95         $("#create_progeny_checkbox").change(function() {
  96             $("#create_progeny_number").toggle(this.checked); // show if it is checked, otherwise hide
  97             $("#use_prefix_suffix").toggle(this.checked); // show if it is checked, otherwise hide
  98             $("#get_prefix_suffix").toggle(this.checked); // show if it is checked, otherwise hide
  99         });
 100
 101         $("#use_prefix_suffix_checkbox").change(function() {
 102             $("#get_prefix_suffix").toggle(this.checked); // show if it is checked, otherwise hide
 103         });
 104
 105         //    $("#data_access_checkbox").change(function() {
 106         //        $("#show_visible_to_role_selection").toggle(this.checked); // show if it is checked, otherwise hide
 107         //    });
 108
 109     });
 110
 111     $('#create_cross_submit').click(function() {
 112
 113         var crossType = $("#cross_type").val();
 114         if (!crossType) {
 115             alert("No type was selected, please select a type before saving a cross/crosses");
 116             return;
 117         }
 118
 119         var crossName = $("#cross_name").val();
 120         crossName = crossName.trim();
 121         if (!crossName) {
 122             alert("A cross name is required");
 123             return;
 124         }
 125
 126         var breeding_program_id = $("#program").val();
 127         if (!breeding_program_id) {
 128             alert("A breeding program is required");
 129             return;
 130         }
 131
 132         var visibleToRole = $("#visible_to_role").val();
 133         var location = $("#location").val();
 134         var folder_name = $("#add_cross_folder_name").val();
 135         var folder_id;
 136         if (folder_name) {  // get id if folder with this name already exisits
 137             folder_id = $('#add_cross_folder_id option').filter(function () { return $(this).html() == folder_name; }).val();
 138         }
 139         else {
 140             folder_id = $("#add_cross_folder_id").val();
 141         }
 142         add_cross(crossType, crossName, breeding_program_id, visibleToRole, location, folder_name, folder_id);
 143
 144     });
 145
 146     $('#cross_upload_breeding_program').change(function(){
 147         get_select_box('folders', 'cross_folder_select_div', {
 148             'name': 'upload_folder_id',
 149             'id': 'upload_folder_id',
 150             'folder_for_crosses': true,
 151             'empty': 1,
 152             'breeding_program_id': jQuery('#cross_upload_breeding_program').val()
 153         });
 154     });
 155
 156     $("#upload_crosses_link").click(function() {
 157
 158         $("#cross_upload_spreadsheet_format_info").click(function() {
 159             $("#cross_upload_spreadsheet_info_dialog").modal("show");
 160         });
 161
 162         get_select_box('folders', 'cross_folder_select_div', {
 163             'name': 'upload_folder_id',
 164             'id': 'upload_folder_id',
 165             'folder_for_crosses': true,
 166             'empty': 1,
 167             'breeding_program_id': jQuery('#cross_upload_breeding_program').val()
 168         });
 169         $("#upload_crosses_dialog").modal("show");
 170     });
 171
 172     $("#upload_crosses_submit").click(function() {
 173         $("#upload_crosses_dialog").modal("hide");
 174         upload_crosses_file();
 175     });
 176
 177     $('#upload_crosses_form').iframePostForm({
 178         json: true,
 179         post: function() {
 180             var uploadFile = $("#crosses_upload_file").val();
 181             if (uploadFile === '') {
 182                 alert("No file selected");
 183             }
 184             jQuery("#working_modal").modal("show");
 185         },
 186         complete: function(response) {
 187             jQuery("#working_modal").modal("hide");
 188             if (response.error_string) {
 189                 $("#upload_cross_error_display tbody").html('');
 190                 $("#upload_cross_error_display tbody").append(response.error_string);
 191                 $("#upload_cross_error_display").modal("show");
 192
 193                 return;
 194             }
 195             if (response.error) {
 196                 alert(response.error);
 197                 return;
 198             }
 199             if (response.success) {
 200                 $('#cross_saved_dialog_message').modal("show");
 201             }
 202         }
 203     });
 204
 205     jQuery("#refresh_crosstree_button").click(function() {
 206         jQuery.ajax({
 207             url: '/ajax/breeders/get_crosses_with_folders',
 208             beforeSend: function() {
 209                 jQuery("#working_modal").modal("show");
 210             },
 211             success: function(response) {
 212                 jQuery("#working_modal").modal("hide");
 213                 location.reload();
 214             },
 215             error: function(response) {
 216                 jQuery("#working_modal").modal("hide");
 217                 alert('An error occurred refreshing crosses jstree html');
 218             }
 219         });
 220     });
 221
 222     function add_cross(crossType, crossName, breeding_program_id, visibleToRole, location, folder_name, folder_id) {
 223
 224         var progenyNumber = $("#progeny_number").val();
 225         var flowerNumber = $("#flower_number").val();
 226         var fruitNumber = $("#fruit_number").val();
 227         var seedNumber = $("#seed_number").val();
 228         var prefix = $("#prefix").val();
 229         var suffix = $("#suffix").val();
 230         var maternal;
 231         var paternal;
 232         var maternal_parents;
 233         var paternal_parents;
 234
 235         switch (crossType) {
 236             case 'biparental':
 237                 maternal = $("#maternal_parent").val();
 238                 paternal = $("#paternal_parent").val();
 239                 break;
 240             case 'self':
 241                 var selfedParent = $("#selfed_parent").val();
 242                 maternal = selfedParent;
 243                 paternal = selfedParent;
 244                 break;
 245             case 'open':
 246                 maternal = $("#open_maternal_parent").val();
 247                 paternal = $("#open_paternal_population").val();
 248                 break;
 249             case 'bulk':
 250                 maternal = $("#bulk_maternal_population").val();
 251                 paternal = $("#bulk_paternal_parent").val();
 252                 break;
 253             case 'bulk_self':
 254                 var bulkedSelfedPopulation = $("#bulk_selfed_population").val();
 255                 maternal = bulkedSelfedPopulation;
 256                 paternal = bulkedSelfedPopulation;
 257                 break;
 258             case 'bulk_open':
 259                 maternal = $("#bulk_open_maternal_population").val();
 260                 paternal = $("#bulk_open_paternal_population").val();
 261                 break;
 262             case 'doubled_haploid':
 263                 var doubledHaploidParent = $("#doubled_haploid_parent").val();
 264                 maternal = doubledHaploidParent;
 265                 paternal = doubledHaploidParent;
 266                 break;
 267             case 'polycross':
 268                 maternal_parents = get_accession_names('polycross_accessions_list_select');
 269                 if (!Array.isArray(maternal_parents)) { alert(maternal_parents); return; }
 270                 break;
 271             case 'reciprocal':
 272                 maternal_parents = get_accession_names('reciprocal_accessions_list_select');
 273                 if (!Array.isArray(maternal_parents)) { alert(maternal_parents); return; }
 274                 break;
 275             case 'multicross':
 276                 maternal_parents = get_accession_names('maternal_accessions_list_select');
 277                 if (!Array.isArray(maternal_parents)) { alert(maternal_parents); return; }
 278                 paternal_parents = get_accession_names('paternal_accessions_list_select');
 279                 if (!Array.isArray(paternal_parents)) { alert(paternal_parents); return; }
 280                 break;
 281         }
 282
 283         $.ajax({
 284             url: '/ajax/cross/add_cross',
 285             timeout: 3000000,
 286             dataType: "json",
 287             type: 'POST',
 288             data: 'cross_name=' + crossName + '&cross_type=' + crossType + '&maternal=' + maternal + '&paternal=' + paternal + '&maternal_parents=' + maternal_parents + '&paternal_parents=' + paternal_parents + '&progeny_number=' + progenyNumber + '&flower_number=' + flowerNumber + '&fruit_number=' + fruitNumber + '&seed_number=' + seedNumber + '&prefix=' + prefix + '&suffix=' + suffix + '&visible_to_role' + visibleToRole + '&breeding_program_id=' + breeding_program_id + '&location=' + location + '&folder_name=' + folder_name + '&folder_id=' + folder_id,
 289             beforeSend: function() {
 290                 jQuery("#create_cross").modal("hide");
 291                 jQuery("#working_modal").modal("show");
 292             },
 293             error: function(response) {
 294                 alert("An error occurred. Please try again later!" + JSON.stringify(response));
 295             },
 296             parseerror: function(response) {
 297                 alert("A parse error occurred. Please try again." + response);
 298             },
 299             success: function(response) {
 300                 jQuery("#working_modal").modal("hide");
 301                 if (response.error) {
 302                     alert(response.error);
 303                 } else {
 304                     $('#cross_saved_dialog_message').modal("show");
 305                 }
 306             },
 307         });
 308
 309     }
 310
 311     function upload_crosses_file() {
 312         var uploadFile = $("#crosses_upload_file").val();
 313         $('#upload_crosses_form').attr("action", "/ajax/cross/upload_crosses_file");
 314         if (uploadFile === '') {
 315             alert("Please select a file");
 316             return;
 317         }
 318         $("#upload_crosses_form").submit();
 319     }
 320
 321     function get_accession_names(accession_select_id) {
 322
 323         var accession_list_id = $('#' + accession_select_id).val();
 324         var lo = new CXGN.List();
 325         var accession_validation = 1;
 326         if (accession_list_id) {
 327             accession_validation = lo.validate(accession_list_id, 'accessions', true);
 328         }
 329
 330         if (!accession_list_id) {
 331             //alert("You need to select an accession list!");
 332             return "You need to select an accession list!";
 333         }
 334
 335         if (accession_validation != 1) {
 336             //alert("The accession list did not pass validation. Please correct the list and try again");
 337             return "The accession list did not pass validation. Please correct the list and try again";
 338         }
 339
 340         var list_data = lo.getListData(accession_list_id);
 341         var accessions = list_data.elements;
 342         var names = [];
 343         for (i = 0; i < accessions.length; i++) {
 344             names.push(accessions[i][1]);
 345         }
 346         return names;
 347     }
 348 });