js/CXGN/BreedersToolbox/GenotypingTrial.js

   1 /*jslint browser: true, devel: true */
   2
   3 /**
   4
   5 =head1 Trial.js
   6
   7 Display for managing genotyping trials
   8
   9
  10 =head1 AUTHOR
  11
  12 Jeremy D. Edwards <jde22@cornell.edu>
  13
  14 =cut
  15
  16 */
  17
  18
  19 var $j = jQuery.noConflict();
  20
  21 jQuery(document).ready(function ($) {
  22
  23     // defined in CXGN.BreedersToolbox.HTMLSelect
  24     get_select_box("locations", "location_select_div");
  25     get_select_box("breeding_programs", "breeding_program_select_div");
  26     get_select_box("years", "year_select_div");
  27
  28     get_select_box("locations", "igd_location_select_div");
  29     get_select_box("breeding_programs", "igd_breeding_program_select_div");
  30     get_select_box("years", "igd_year_select_div");
  31
  32     $(function() {
  33         $( "#genotyping_trials_accordion" )
  34             .accordion({
  35                 header: "> div > h3",
  36                 collapsible: true,
  37                 active: false,
  38                 heightStyle: "content"
  39             })
  40             .sortable({
  41                 axis: "y",
  42                 handle: "h3",
  43                 stop: function( event, ui ) {
  44                     // IE doesn't register the blur when sorting
  45                     // so trigger focusout handlers to remove .ui-state-focus
  46                     ui.item.children( "h3" ).triggerHandler( "focusout" );
  47                 }
  48             });
  49     });
  50
  51     $('#genotyping_trial_dialog').dialog( {
  52         autoOpen: false,
  53         autoResize:true,
  54         width: 600,
  55         position: ['top', 150],
  56         title: 'Create a genotyping trial',
  57         buttons: [
  58             {
  59                 text: 'OK',
  60                 id: 'genotype_trial_submit_button',
  61                 click: function() {
  62                     submit_genotype_trial();
  63                 },
  64             },
  65             {
  66                 text: 'Cancel',
  67                 id: 'genotype_trial_cancel_button',
  68                 click: function() {
  69                     $('#genotyping_trial_dialog').dialog("close");
  70                 }
  71             }
  72         ]
  73     });
  74
  75     function submit_genotype_trial() {
  76         var breeding_program = $('#breeding_program_select').val();
  77         var year = $('#year_select').val();
  78         var location = $('#location_select').val();
  79         var description = $('#genotyping_trial_description').val();
  80         var name = $('#genotyping_trial_name').val();
  81         var list_id = $('#accession_select_box_list_select').val();
  82
  83         if (name == '') {
  84             alert("A name is required and it should be unique in the database. Please try again.");
  85
  86             return;
  87         }
  88
  89         var l = new CXGN.List();
  90         if (! l.validate(list_id, 'accessions', true)) {
  91             alert('The list contains elements that are not accessions.');
  92
  93             return;
  94         }
  95
  96         var elements = l.getList(list_id);
  97         if (typeof elements == 'undefined' ) {
  98             alert("There are no elements in the list provided.");
  99
 100             return;
 101         }
 102
 103         if (elements.length > 95) {
 104             $('#working').dialog("close");
 105             alert("The list needs to have less than 96 elements (one well is reserved for the BLANK). Please use another list.");
 106
 107             return;
 108         }
 109
 110         $('#working').dialog("open");
 111
 112         $.ajax( {
 113             url: '/ajax/breeders/genotypetrial',
 114             data: { 'location': location, 'breeding_program': breeding_program, 'year': year, 'description': description, 'name': name, 'list_id':list_id },
 115             success : function(response) {
 116                 if (response.error) {
 117                     alert(response.error);
 118                     $('#working').dialog("close");
 119                 }
 120                 else {
 121                     alert(response.message);
 122                     $('#genotyping_trial_dialog').dialog("close");
 123                     $('#working').dialog("close");
 124                     window.location.href = "/breeders/trial/"+response.trial_id;
 125                 }
 126             },
 127             error: function(response) {
 128                 alert('An error occurred trying the create the layout.');
 129                 $('#working').dialog("close");
 130             }
 131         });
 132     }
 133
 134     jQuery('#genotyping_trial_dialog').bind("dialogopen", function displayMenu() {
 135         var l = new CXGN.List();
 136         var html = l.listSelect('accession_select_box', [ 'accessions', 'plots' ]);
 137         $('#accession_select_box_span').html(html);
 138     });
 139
 140     function open_genotyping_trial_dialog () {
 141         $('#genotyping_trial_dialog').dialog("open");
 142     }
 143
 144     $('#create_genotyping_trial_link').click(function () {
 145         open_genotyping_trial_dialog();
 146     });
 147
 148 ///////////////////////////////////////////////////////////////
 149
 150 //    $('#igd_genotyping_trial_dialog').dialog( {
 151 //      autoOpen: false,
 152 //      autoResize:true,
 153 //      width: 600,
 154 //      position: ['top', 150],
 155 //      title: 'Create an IGD genotyping trial',
 156 //      buttons: [
 157 //          {
 158 //              text: 'OK',
 159 //              id: 'genotype_trial_submit_button',
 160 //              click: function() {
 161 //                  submit_igd_genotype_trial();
 162 //              },
 163 //          },
 164 //          {
 165 //              text: 'Cancel',
 166 //              id: 'genotype_trial_cancel_button',
 167 //              click: function() {
 168 //                  $('#igd_genotyping_trial_dialog').dialog("close");
 169 //              }
 170 //          }
 171 //      ]
 172 //    });
 173
 174     $('#add_igd_geno_trial_submit').click(function () {
 175         submit_igd_genotype_trial();
 176     });
 177
 178     function submit_igd_genotype_trial() {
 179         var breeding_program = $('#breeding_program_select').val();
 180         var year = $('#year_select').val();
 181         var location = $('#location_select').val();
 182         var description = $('#genotyping_trial_description').val();
 183         var name = $('#genotyping_trial_name').val();
 184         var list_id = $('#igd_accession_select_box_list_select').val();
 185
 186         //if (name == '') {
 187         //    alert("A name is required and it should be unique in the database. Please try again.");
 188         //    return;
 189         //}
 190            // note: taking name from file
 191
 192         var l = new CXGN.List();
 193         if (! l.validate(list_id, 'accessions', true)) {
 194             alert('The list contains elements that are not accessions.');
 195             return;
 196         }
 197
 198         var elements = l.getList(list_id);
 199         if (typeof elements == 'undefined' ) {
 200             alert("There are no elements in the list provided.");
 201             return;
 202         }
 203
 204         if (elements.length > 95) {
 205             $('#working_modal').modal("show");
 206             alert("The list needs to have less than 96 elements (one well is reserved for the BLANK). Please use another list.");
 207
 208             return;
 209         }
 210
 211         $('#working_modal').modal("show");
 212
 213         $('#upload_igd_genotyping_trials_form').append('<input type="hidden" name="list_id" value="'+list_id+'">');
 214         $('#upload_igd_genotyping_trials_form').append('<input type="hidden" name="year" value="'+year+'">');
 215         $('#upload_igd_genotyping_trials_form').append('<input type="hidden" name="breeding_program" value="'+breeding_program+'">');
 216         $('#upload_igd_genotyping_trials_form').append('<input type="hidden" name="location" value="'+location+'">');
 217
 218     //  $.ajax( {
 219     //      url: '/ajax/breeders/igdgenotypetrial',
 220     //      data: { 'location': location, 'breeding_program': breeding_program, 'year': year, 'description': description, 'name': name, 'list_id':list_id },
 221     //      success : function(response) {
 222     //          if (response.error) {
 223     //              alert(response.error);
 224     //              $('#working').dialog("close");
 225     //          }
 226     //          else {
 227     //              alert(response.message);
 228     //              $('#genotyping_trial_dialog').dialog("close");
 229     //              $('#working').dialog("close");
 230     //              window.location.href = "/breeders/trial/"+response.trial_id;
 231     //          }
 232     //      },
 233     //      error: function(response) {
 234     //          alert('An error occurred trying the create the layout.');
 235     //          $('#working').dialog("close");
 236     //      }
 237     //  });
 238
 239         $("#upload_igd_genotyping_trials_form").submit();
 240
 241
 242     }
 243
 244     $('#upload_igd_genotyping_trials_form').iframePostForm({
 245         json: true,
 246         post: function () {
 247             var uploadedGenotypingFile = $("#igd_genotyping_trial_upload_file").val();
 248             $('#working_modal').modal("show");
 249             if (uploadedGenotypingFile === '') {
 250                 $('#working_modal').modal("hide");
 251                 alert("Please select a file to upload.");
 252                 return;
 253             }
 254         },
 255         complete: function (response) {
 256             //var response_json = JSON.stringify(response);
 257             //alert(response_json);
 258             $('#working_modal').modal("hide");
 259             if (response.error) {
 260                 var error = response.error;
 261                 $('#working_modal').modal("hide");
 262                 // if (response.error) {
 263                 //      $("#upload_genotyping_error_display tbody").html('');
 264                 //      $("#upload_genotyping_error_display tbody").append(response.error_string);
 265
 266
 267                 //      $(function () {
 268                 //          $("#upload_genotyping_error_display").dialog({
 269                 //              modal: true,
 270                 //              autoResize:true,
 271                 //              width: 650,
 272                 //              position: ['top', 250],
 273                 //              title: "Errors in uploaded file",
 274                 //              buttons: {
 275                 //                  Ok: function () {
 276                 //                      $(this).dialog("close");
 277                     //              }
 278                 //              }
 279                 //          });
 280                 //      });
 281                 //      return;
 282                 // }
 283                 if (response.error) {
 284                     alert(error);
 285                     return;
 286                 }
 287                 if (response.success) {
 288                     //$('#genotyping_upload_success_dialog_message').dialog("open");
 289                     //alert("File uploaded successfully");
 290                 }
 291             }
 292             alert("Successfully stored the trial.");
 293             window.location.href = "/breeders/trial/"+response.trial_id;
 294
 295         }
 296     });
 297
 298     $('#igd_genotyping_trial_dialog').on('show.bs.modal', function (e) {
 299         var l = new CXGN.List();
 300         var html = l.listSelect('igd_accession_select_box', [ 'accessions', 'plots' ]);
 301         $('#igd_accession_select_box_span').html(html);
 302     })
 303
 304 //    jQuery('#igd_genotyping_trial_dialog').bind("dialogopen", function displayMenu() {
 305 //      var l = new CXGN.List();
 306 //      var html = l.listSelect('igd_accession_select_box', [ 'accessions', 'plots' ]);
 307 //      $('#igd_accession_select_box_span').html(html);
 308 //    });
 309
 310
 311     function open_igd_genotyping_trial_dialog () {
 312         $('#igd_genotyping_trial_dialog').modal("show");
 313     }
 314
 315     $('#create_igd_genotyping_trial_link').click(function() {
 316         open_igd_genotyping_trial_dialog();
 317     });
 318
 319     $('#delete_layout_data_by_trial_id').click(function() {
 320         var trial_id = get_trial_id();
 321         var yes = confirm("Are you sure you want to delete this experiment with id "+trial_id+" ? This action cannot be undone.");
 322         if (yes) {
 323             jQuery('#working_modal').modal("show");
 324             var html = jQuery('#working_msg').html();
 325             jQuery('#working_msg').html(html+"Deleting genotyping experiment...<br />");
 326             jQuery.ajax( {
 327                 async: false,
 328                 url: '/ajax/breeders/trial/'+trial_id+'/delete/layout',
 329                 success: function(response) {
 330                     if (response.error) {
 331                         jQuery('#working_modal').modal("hide");
 332                         alert(response.error);
 333                     }
 334                     else {
 335                         //Do nothing, as the process continues...
 336                     }
 337                 },
 338                 error: function(response) {
 339                     jQuery('#working_modal').modal("hide");
 340                     alert("An error occurred.");
 341                 }
 342             });
 343             html = jQuery('#working_msg').html();
 344             jQuery('#working_msg').html(html+"Removing the project entry...");
 345             jQuery.ajax( {
 346                 async: false,
 347                 url: '/ajax/breeders/trial/'+trial_id+'/delete/entry',
 348                 success: function(response) {
 349                     if (response.error) {
 350                         jQuery('#working_modal').modal("hide");
 351                         alert(response.error);
 352                     }
 353                     else {
 354                         jQuery('#working_modal').modal("hide");
 355                         alert('The project entry has been deleted.'); // to do: give some idea how many items were deleted.
 356                         window.location.href="/breeders/trial/"+trial_id;
 357                     }
 358                 },
 359                 error: function(response) {
 360                     jQuery('#working_modal').modal("hide");
 361                     alert("An error occurred.");
 362                 }
 363             });
 364
 365         }
 366     });
 367 });