js/CXGN/BreedersToolbox/AddTrial.js

   1 /*jslint browser: true, devel: true */
   2
   3 /**
   4
   5 =head1 AddTrial.js
   6
   7 Dialogs for adding trials
   8
   9
  10 =head1 AUTHOR
  11
  12 Jeremy D. Edwards <jde22@cornell.edu>
  13
  14 =cut
  15
  16 */
  17
  18
  19 var $j = jQuery.noConflict();
  20
  21 jQuery(document).ready(function ($) {
  22
  23     var list = new CXGN.List();
  24
  25     var design_json;
  26
  27     function save_project_info(name, year, desc) {
  28         alert('data = ' + name + ' ' + year + ' ' + desc);
  29         $.ajax({
  30             type: 'GET',
  31             async: false,
  32             url: '/ajax/breeders/project/insert',
  33             data: {
  34                 'project_name': name,
  35                 'project_description': desc,
  36                 'year': year
  37             },
  38             success: function (response) {
  39                 if (response.error) {
  40                     alert(response.error);
  41                 } else {
  42                     alert('The trial information was saved.');
  43                 }
  44             },
  45             error: function () {
  46                 alert('An error occurred. sorry');
  47             }
  48         });
  49     }
  50
  51     $(document).on('focusout', '#select_list_list_select', function() {
  52         if ($('#select_list_list_select').val()) {
  53             var stock_list_id = $('#select_list_list_select').val();
  54             var stock_list = JSON.stringify(list.getList(stock_list_id));
  55             verify_stock_list(stock_list);
  56         }
  57     });
  58
  59     $(document).on('focusout', '#list_of_checks_section_list_select', function() {
  60         if ($('#list_of_checks_section_list_select').val()) {
  61             var stock_list_id = $('#list_of_checks_section_list_select').val();
  62             var stock_list = JSON.stringify(list.getList(stock_list_id));
  63             verify_stock_list(stock_list);
  64         }
  65     });
  66
  67     $(document).on('focusout', '#crbd_list_of_checks_section_list_select', function() {
  68         if ($('#crbd_list_of_checks_section_list_select').val()) {
  69             var stock_list_id = $('#crbd_list_of_checks_section_list_select').val();
  70             var stock_list = JSON.stringify(list.getList(stock_list_id));
  71             verify_stock_list(stock_list);
  72         }
  73     });
  74
  75     $(document).on('focusout', '#list_of_unrep_accession_list_select', function() {
  76         if ($('#list_of_unrep_accession_list_select').val()) {
  77             var stock_list_id = $('#list_of_unrep_accession_list_select').val();
  78             var stock_list = JSON.stringify(list.getList(stock_list_id));
  79             verify_stock_list(stock_list);
  80         }
  81     });
  82
  83     $(document).on('focusout', '#list_of_rep_accession_list_select', function() {
  84         if ($('#list_of_rep_accession_list_select').val()) {
  85             var stock_list_id = $('#list_of_rep_accession_list_select').val();
  86             var stock_list = JSON.stringify(list.getList(stock_list_id));
  87             verify_stock_list(stock_list);
  88         }
  89     });
  90
  91     var stock_list_verified = 0;
  92     function verify_stock_list(stock_list) {
  93         $.ajax({
  94             type: 'POST',
  95             timeout: 3000000,
  96             url: '/ajax/trial/verify_stock_list',
  97             beforeSend: function(){
  98                 jQuery('#working_modal').modal('show');
  99             },
 100             dataType: "json",
 101             data: {
 102                 'stock_list': stock_list,
 103             },
 104             success: function (response) {
 105                 //console.log(response);
 106                 jQuery('#working_modal').modal('hide');
 107                 if (response.error) {
 108                     alert(response.error);
 109                     stock_list_verified = 0;
 110                 }
 111                 if (response.success){
 112                     stock_list_verified = 1;
 113                 }
 114             },
 115             error: function () {
 116                 jQuery('#working_modal').modal('hide');
 117                 alert('An error occurred. sorry');
 118                 stock_list_verified = 0;
 119             }
 120        });
 121     }
 122
 123     var num_plants_per_plot = 0;
 124     var num_subplots_per_plot = 0;
 125     function generate_experimental_design() {
 126         var name = $('#new_trial_name').val();
 127         var year = $('#add_project_year').val();
 128         var desc = $('#add_project_description').val();
 129         var trial_location = $('#add_project_location').val();
 130         var block_number = $('#block_number').val();
 131         //alert(block_number);
 132         var row_number= $('#row_number').val();
 133         var row_number_per_block=$('#row_number_per_block').val();
 134         var col_number_per_block=$('#col_number_per_block').val();
 135         var col_number=$('#col_number').val();
 136        // alert(row_number);
 137         var stock_list_id = $('#select_list_list_select').val();
 138         var control_list_id = $('#list_of_checks_section_list_select').val();
 139         var control_list_id_crbd = $('#crbd_list_of_checks_section_list_select').val();
 140
 141         var control_list_crbd;
 142         if (control_list_id_crbd != ""){
 143             control_list_crbd = JSON.stringify(list.getList(control_list_id_crbd));
 144         }
 145         var stock_list;
 146         if (stock_list_id != "") {
 147             stock_list_array = list.getList(stock_list_id);
 148             stock_list = JSON.stringify(list.getList(stock_list_id));
 149         }
 150         var control_list;
 151         if (control_list_id != "") {
 152             control_list = JSON.stringify(list.getList(control_list_id));
 153         }
 154
 155         var design_type = $('#select_design_method').val();
 156         if (design_type == "") {
 157             var design_type = $('#select_multi-design_method').val();
 158         }
 159
 160         var rep_count = $('#rep_count').val();
 161         var block_size = $('#block_size').val();
 162         var max_block_size = $('#max_block_size').val();
 163         var plot_prefix = $('#plot_prefix').val();
 164         var start_number = $('#start_number').val();
 165         var increment = $('#increment').val();
 166         var fieldmap_col_number = $('#fieldMap_col_number').val();
 167         var fieldmap_row_number = $('#fieldMap_row_number').val();
 168         var plot_layout_format = $('#plot_layout_format').val();
 169         var replicated_accession_list_id = $('#list_of_rep_accession_list_select').val();
 170         var unreplicated_accession_list_id = $('#list_of_unrep_accession_list_select').val();
 171         var row_in_design_number = $('#no_of_row_in_design').val();
 172         var col_in_design_number = $('#no_of_col_in_design').val();
 173         var no_of_rep_times = $('#no_of_rep_times').val();
 174         var no_of_block_sequence = $('#no_of_block_sequence').val();
 175         var no_of_sub_block_sequence = $('#no_of_sub_block_sequence').val();
 176
 177         var unreplicated_accession_list;
 178         if (unreplicated_accession_list_id != "") {
 179             unreplicated_accession_list = JSON.stringify(list.getList(unreplicated_accession_list_id));
 180         }
 181
 182         var replicated_accession_list;
 183         if (replicated_accession_list_id != "") {
 184             replicated_accession_list = JSON.stringify(list.getList(replicated_accession_list_id));
 185         }
 186
 187         var treatments = []
 188         if (design_type == 'splitplot'){
 189             for(var i=1; i<5; i++){
 190                 var treatment_value = $('#create_trial_with_treatment_name_input'+i).val();
 191                 if(treatment_value != ''){
 192                     treatments.push(treatment_value);
 193                 }
 194             }
 195             //console.log(treatments);
 196             var num_plants_per_treatment = $('#num_plants_per_treatment').val();
 197             num_plants_per_plot = 0;
 198             if (num_plants_per_treatment){
 199                 num_plants_per_plot = num_plants_per_treatment*treatments.length;
 200             }
 201             num_subplots_per_plot = treatments.length;
 202         }
 203
 204         var greenhouse_num_plants = [];
 205         if (stock_list_id != "" && design_type == 'greenhouse') {
 206             for (var i=0; i<stock_list_array.length; i++) {
 207                 var value = jQuery("input#greenhouse_num_plants_input_" + i).val();
 208                 if (value == '') {
 209                     value = 1;
 210                 }
 211                 greenhouse_num_plants.push(value);
 212             }
 213             //console.log(greenhouse_num_plants);
 214         }
 215
 216         //alert(design_type);
 217
 218         $.ajax({
 219             type: 'POST',
 220             timeout: 3000000,
 221             url: '/ajax/trial/generate_experimental_design',
 222             dataType: "json",
 223             beforeSend: function() {
 224                 $('#working_modal').modal("show");
 225             },
 226             data: {
 227                 'project_name': name,
 228                 'project_description': desc,
 229                 'year': year,
 230                 'trial_location': trial_location,
 231                 'stock_list': stock_list,
 232                 'control_list': control_list,
 233                 'control_list_crbd': control_list_crbd,
 234                 'design_type': design_type,
 235                 'rep_count': rep_count,
 236                 'block_number': block_number,
 237                 'row_number': row_number,
 238                 'row_number_per_block': row_number_per_block,
 239                 'col_number_per_block': col_number_per_block,
 240                 'col_number': col_number,
 241                 'block_size': block_size,
 242                 'max_block_size': max_block_size,
 243                 'plot_prefix': plot_prefix,
 244                 'start_number': start_number,
 245                 'increment': increment,
 246                 'greenhouse_num_plants': JSON.stringify(greenhouse_num_plants),
 247                 'fieldmap_col_number': fieldmap_col_number,
 248                 'fieldmap_row_number': fieldmap_row_number,
 249                 'plot_layout_format': plot_layout_format,
 250                 'treatments':treatments,
 251                 'num_plants_per_plot':num_plants_per_plot,
 252                 'row_in_design_number': row_in_design_number,
 253                 'col_in_design_number': col_in_design_number,
 254                 'no_of_rep_times': no_of_rep_times,
 255                 'no_of_block_sequence': no_of_block_sequence,
 256                 'unreplicated_accession_list': unreplicated_accession_list,
 257                 'replicated_accession_list': replicated_accession_list,
 258                 'no_of_sub_block_sequence': no_of_sub_block_sequence,
 259             },
 260             success: function (response) {
 261                 $('#working_modal').modal("hide");
 262                 if (response.error) {
 263                     alert(response.error);
 264                 } else {
 265
 266                     $('#trial_design_information').html(response.design_info_view_html);
 267                     var layout_view = JSON.parse(response.design_layout_view_html);
 268                     //console.log(layout_view);
 269                     var layout_html = '';
 270                     for (var i=0; i<layout_view.length; i++) {
 271                         //console.log(layout_view[i]);
 272                         layout_html += layout_view[i] + '<br>';
 273                     }
 274                     $('#trial_design_view_layout_return').html(layout_html);
 275                     //$('#trial_design_view_layout_return').html(response.design_layout_view_html);
 276
 277                     $('#working_modal').modal("hide");
 278                     $('#trial_design_confirm').modal("show");
 279                     design_json = response.design_json;
 280                 }
 281             },
 282             error: function () {
 283                 $('#working_modal').modal("hide");
 284                 alert('An error occurred. sorry.');
 285             }
 286        });
 287     }
 288
 289     //When the user submits the form, input validation happens here before proceeding to design generation
 290     $(document).on('click', '#new_trial_submit', function () {
 291         var name = $('#new_trial_name').val();
 292         var year = $('#add_project_year').val();
 293         var desc = $('textarea#add_project_description').val();
 294         var method_to_use = $('.format_type:checked').val();
 295         if (name == '') {
 296             alert('Trial name required');
 297             return;
 298         }
 299         if (year === '' || desc === '') {
 300             alert('Year and description are required.');
 301             return;
 302         }
 303         if (stock_list_verified == 1){
 304             if (method_to_use == "empty") {
 305                 alert('adding a project');
 306                 save_project_info(name, year, desc);
 307             }
 308             if (method_to_use == "create_with_design_tool") {
 309                 generate_experimental_design();
 310             }
 311         } else {
 312             alert('Accession list is not valid!');
 313             return;
 314         }
 315     });
 316
 317     $(document).on('change', '#select_design_method', function () {
 318         //$("#add_project_dialog").dialog("option", "height","auto");
 319
 320         var design_method = $("#select_design_method").val();
 321         if (design_method == "CRD") {
 322             $("#trial_design_more_info").show();
 323             $("#trial_multi-design_more_info").show();
 324             $("#FieldMap").show();
 325             $("#prephelp").hide();
 326             //$("#fieldmap_options").show();
 327             //$("#add_project_dialog").dialog("option", "height","auto");
 328             $("#show_list_of_accession_section").show();
 329             $("#show_list_of_unrep_accession").hide();
 330             $("#show_list_of_rep_accession").hide();
 331             $("#show_no_of_row_in_design").hide();
 332             $("#show_no_of_col_in_design").hide();
 333             $("#show_no_of_rep_times").hide();
 334             $("#show_no_of_block_sequence").hide();
 335             $("#show_no_of_sub_block_sequence").hide();
 336             $("#show_list_of_checks_section").hide();
 337             $("#crbd_show_list_of_checks_section").show();
 338             $("#rep_count_section").show();
 339             $("#block_number_section").hide();
 340             $("#block_size_section").hide();
 341             $("#max_block_section").hide();
 342             $("#row_number_section").hide();
 343             $("#row_number_per_block_section").hide();
 344             $("#col_number_per_block_section").hide();
 345             $("#col_number_section").hide();
 346             $("#row_number_per_block_section").hide();
 347             $("#other_parameter_section").hide();
 348             $("#design_info").show();
 349             $("#greenhouse_num_plants_per_accession_section").hide();
 350             $('#greenhouse_default_num_plants_per_accession').hide();
 351             $("#create_trial_with_treatment_section").hide();
 352             $("#num_plants_per_plot_section").hide();
 353         } else if (design_method == "RCBD") {
 354             $("#trial_design_more_info").show();
 355             $("#trial_multi-design_more_info").show();
 356             $("#FieldMap").show();
 357             $("#prephelp").hide();
 358             //$("#add_project_dialog").dialog("option", "height","auto");
 359             $("#show_list_of_accession_section").show();
 360             $("#show_list_of_unrep_accession").hide();
 361             $("#show_list_of_rep_accession").hide();
 362             $("#show_no_of_row_in_design").hide();
 363             $("#show_no_of_col_in_design").hide();
 364             $("#show_no_of_rep_times").hide();
 365             $("#show_no_of_block_sequence").hide();
 366             $("#show_no_of_sub_block_sequence").hide();
 367             $("#crbd_show_list_of_checks_section").show();
 368             $("#show_list_of_checks_section").hide();
 369             $("#rep_count_section").hide();
 370             $("#block_number_section").show();
 371             $("#block_size_section").hide();
 372             $("#max_block_size_section").hide();
 373             $("#row_number_section").hide();
 374             $("#row_number_per_block_section").hide();
 375             $("#col_number_per_block_section").hide();
 376             $("#col_number_section").hide();
 377             $("#row_number_per_block_section").hide();
 378             $("#other_parameter_section").hide();
 379             $("#design_info").show();
 380             $("#greenhouse_num_plants_per_accession_section").hide();
 381             $('#greenhouse_default_num_plants_per_accession').hide();
 382             $("#create_trial_with_treatment_section").hide();
 383             $("#num_plants_per_plot_section").hide();
 384         } else if (design_method == "Alpha") {
 385             $("#FieldMap").show();
 386             $("#prephelp").hide();
 387             $("#trial_design_more_info").show();
 388             $("#trial_multi-design_more_info").show();
 389             //$("#add_project_dialog").dialog("option", "height","auto");
 390             $("#show_list_of_accession_section").show();
 391             $("#show_list_of_unrep_accession").hide();
 392             $("#show_list_of_rep_accession").hide();
 393             $("#show_no_of_row_in_design").hide();
 394             $("#show_no_of_col_in_design").hide();
 395             $("#show_no_of_rep_times").hide();
 396             $("#show_no_of_block_sequence").hide();
 397             $("#show_no_of_sub_block_sequence").hide();
 398             $("#crbd_show_list_of_checks_section").show();
 399             $("#show_list_of_checks_section").hide();
 400             $("#rep_count_section").show();
 401             $("#block_number_section").hide();
 402             $("#block_size_section").show();
 403             $("#max_block_size_section").hide();
 404             $("#row_number_section").hide();
 405             $("#row_number_per_block_section").hide();
 406             $("#col_number_per_block_section").hide();
 407             $("#col_number_section").hide();
 408             $("#row_number_per_block_section").hide();
 409             $("#other_parameter_section").hide();
 410             $("#design_info").show();
 411             $("#greenhouse_num_plants_per_accession_section").hide();
 412             $('#greenhouse_default_num_plants_per_accession').hide();
 413             $("#create_trial_with_treatment_section").hide();
 414             $("#num_plants_per_plot_section").hide();
 415         } else if (design_method == "Lattice") {
 416             $("#FieldMap").show();
 417             $("#prephelp").hide();
 418             $("#trial_design_more_info").show();
 419             $("#trial_multi-design_more_info").show();
 420             $("#crbd_show_list_of_checks_section").show();
 421             $("#show_list_of_accession_section").show();
 422             $("#show_list_of_unrep_accession").hide();
 423             $("#show_list_of_rep_accession").hide();
 424             $("#show_no_of_row_in_design").hide();
 425             $("#show_no_of_col_in_design").hide();
 426             $("#show_no_of_rep_times").hide();
 427             $("#show_no_of_block_sequence").hide();
 428             $("#show_no_of_sub_block_sequence").hide();
 429             $("#show_list_of_checks_section").hide();
 430             $("#rep_count_section").show();
 431             $("#block_number_section").hide();
 432             $("#block_size_section").hide();
 433             $("#max_block_size_section").hide();
 434             $("#row_number_section").hide();
 435             $("#row_number_per_block_section").hide();
 436             $("#col_number_per_block_section").hide();
 437             $("#col_number_section").hide();
 438             $("#row_number_per_block_section").hide();
 439             $("#other_parameter_section").hide();
 440             $("#design_info").show();
 441             $("#greenhouse_num_plants_per_accession_section").hide();
 442             $('#greenhouse_default_num_plants_per_accession').hide();
 443             $("#create_trial_with_treatment_section").hide();
 444             $("#num_plants_per_plot_section").hide();
 445         } else if (design_method == "Augmented") {
 446             $("#FieldMap").hide();
 447             $("#prephelp").hide();
 448             $("#trial_design_more_info").show();
 449             $("#trial_multi-design_more_info").show();
 450             //$("#add_project_dialog").dialog("option", "height","auto");
 451             $("#show_list_of_checks_section").show();
 452             $("#crbd_show_list_of_checks_section").hide();
 453             $("#show_list_of_accession_section").show();
 454             $("#show_list_of_unrep_accession").hide();
 455             $("#show_list_of_rep_accession").hide();
 456             $("#show_no_of_row_in_design").hide();
 457             $("#show_no_of_col_in_design").hide();
 458             $("#show_no_of_rep_times").hide();
 459             $("#show_no_of_block_sequence").hide();
 460             $("#show_no_of_sub_block_sequence").hide();
 461             $("#rep_count_section").hide();
 462             $("#block_number_section").hide();
 463             $("#block_size_section").hide();
 464             $("#max_block_size_section").show();
 465             $("#row_number_section").hide();
 466             $("#row_number_per_block_section").hide();
 467             $("#col_number_per_block_section").hide();
 468             $("#col_number_section").hide();
 469             $("#row_number_per_block_section").hide();
 470             $("#other_parameter_section").hide();
 471             $("#design_info").show();
 472             $("#greenhouse_num_plants_per_accession_section").hide();
 473             $('#greenhouse_default_num_plants_per_accession').hide();
 474             $("#create_trial_with_treatment_section").hide();
 475             $("#num_plants_per_plot_section").hide();
 476         } else if (design_method == "") {
 477             $("#FieldMap").hide();
 478             $("#prephelp").hide();
 479             //$("#add_project_dialog").dialog("option", "height","auto");
 480             $("#show_list_of_checks_section").hide();
 481             $("#crbd_show_list_of_checks_section").hide();
 482             $("#show_list_of_accession_section").hide();
 483             $("#show_list_of_unrep_accession").hide();
 484             $("#show_list_of_rep_accession").hide();
 485             $("#show_no_of_row_in_design").hide();
 486             $("#show_no_of_col_in_design").hide();
 487             $("#show_no_of_rep_times").hide();
 488             $("#show_no_of_block_sequence").hide();
 489             $("#show_no_of_sub_block_sequence").hide();
 490             $("#trial_design_more_info").hide();
 491             $("#trial_multi-design_more_info").hide();
 492             $("#rep_count_section").hide();
 493             $("#block_number_section").hide();
 494             $("#block_size_section").hide();
 495             $("#max_block_size_section").hide();
 496             $("#row_number_section").hide();
 497             $("#row_number_per_block_section").hide();
 498             $("#col_number_per_block_section").hide();
 499             $("#col_number_section").hide();
 500             $("#row_number_per_block_section").show();
 501             $("#other_parameter_section").hide();
 502             $("#other_parameter_section2").hide();
 503             $("#design_info").show();
 504             $("#greenhouse_num_plants_per_accession_section").hide();
 505             $('#greenhouse_default_num_plants_per_accession').hide();
 506             $("#create_trial_with_treatment_section").hide();
 507             $("#num_plants_per_plot_section").hide();
 508         }
 509
 510         else if (design_method == "MAD") {
 511             $("#FieldMap").hide();
 512             $("#prephelp").hide();
 513             $("#trial_design_more_info").show();
 514             $("#trial_multi-design_more_info").show();
 515             //$("#add_project_dialog").dialog("option", "height","auto");
 516             $("#show_list_of_checks_section").show();
 517             $("#crbd_show_list_of_checks_section").hide();
 518             $("#show_list_of_accession_section").show();
 519             $("#show_list_of_unrep_accession").hide();
 520             $("#show_list_of_rep_accession").hide();
 521             $("#show_no_of_row_in_design").hide();
 522             $("#show_no_of_col_in_design").hide();
 523             $("#show_no_of_rep_times").hide();
 524             $("#show_no_of_block_sequence").hide();
 525             $("#show_no_of_sub_block_sequence").hide();
 526             $("#rep_count_section").hide();
 527             $("#row_number_section").show();
 528             $("#block_number_section").hide();
 529             $("#block_size_section").hide();
 530             $("#row_number_per_block_section").show();
 531             $("#col_number_per_block_section").show();
 532             $("#col_number_section").show();
 533             $("#max_block_size_section").hide();
 534             $("#row_number_per_block_section").show();
 535             $("#other_parameter_section").show();
 536             $("#design_info").show();
 537
 538             $("#show_other_parameter_options").click(function () {
 539                 if ($('#show_other_parameter_options').is(':checked')) {
 540                     $("#other_parameter_options").show();
 541                     //$("#add_project_dialog").dialog("option", "height","auto");
 542                 }
 543                 else {
 544                     $("#other_parameter_options").hide();
 545                     //$("#add_project_dialog").dialog("option", "height","auto");
 546                 }
 547             });
 548             $("#greenhouse_num_plants_per_accession_section").hide();
 549             $('#greenhouse_default_num_plants_per_accession').hide();
 550             $("#create_trial_with_treatment_section").hide();
 551             $("#num_plants_per_plot_section").hide();
 552         }
 553
 554         else if (design_method == 'greenhouse') {
 555             $("#FieldMap").hide();
 556             $("#prephelp").hide();
 557             $("#trial_design_more_info").show();
 558             $("#trial_multi-design_more_info").show();
 559             $("#show_list_of_checks_section").hide();
 560             $("#crbd_show_list_of_checks_section").hide();
 561             $("#show_list_of_accession_section").show();
 562             $("#show_list_of_unrep_accession").hide();
 563             $("#show_list_of_rep_accession").hide();
 564             $("#show_no_of_row_in_design").hide();
 565             $("#show_no_of_col_in_design").hide();
 566             $("#show_no_of_rep_times").hide();
 567             $("#show_no_of_block_sequence").hide();
 568             $("#show_no_of_sub_block_sequence").hide();
 569             $("#rep_count_section").hide();
 570             $("#block_number_section").hide();
 571             $("#block_size_section").hide();
 572             $("#max_block_section").hide();
 573             $("#row_number_section").hide();
 574             $("#row_number_per_block_section").hide();
 575             $("#col_number_per_block_section").hide();
 576             $("#col_number_section").hide();
 577             $("#row_number_per_block_section").hide();
 578             $("#other_parameter_section").hide();
 579             $("#design_info").hide();
 580             $('#greenhouse_default_num_plants_per_accession').show();
 581             $("#greenhouse_num_plants_per_accession_section").show();
 582             $('#greenhouse_default_num_plants_per_accession').show();
 583             $("#create_trial_with_treatment_section").hide();
 584             $("#num_plants_per_plot_section").hide();
 585             greenhouse_show_num_plants_section();
 586         }
 587
 588         else if (design_method == 'splitplot') {
 589             $("#FieldMap").show();
 590             $("#prephelp").hide();
 591             $("#trial_design_more_info").show();
 592             $("#trial_multi-design_more_info").show();
 593             $("#show_list_of_checks_section").hide();
 594             $("#crbd_show_list_of_checks_section").hide();
 595             $("#show_list_of_accession_section").show();
 596             $("#show_list_of_unrep_accession").hide();
 597             $("#show_list_of_rep_accession").hide();
 598             $("#show_no_of_row_in_design").hide();
 599             $("#show_no_of_col_in_design").hide();
 600             $("#show_no_of_rep_times").hide();
 601             $("#show_no_of_block_sequence").hide();
 602             $("#show_no_of_sub_block_sequence").hide();
 603             $("#rep_count_section").hide();
 604             $("#block_number_section").show();
 605             $("#block_size_section").hide();
 606             $("#max_block_section").hide();
 607             $("#row_number_section").hide();
 608             $("#row_number_per_block_section").hide();
 609             $("#col_number_per_block_section").hide();
 610             $("#col_number_section").hide();
 611             $("#row_number_per_block_section").hide();
 612             $("#other_parameter_section").hide();
 613             $("#design_info").show();
 614             $('#greenhouse_default_num_plants_per_accession').hide();
 615             $("#greenhouse_num_plants_per_accession_section").hide();
 616             $('#greenhouse_default_num_plants_per_accession').hide();
 617             $("#create_trial_with_treatment_section").show();
 618             $("#num_plants_per_plot_section").show();
 619         }
 620         else if (design_method == 'p-rep') {
 621             $("#FieldMap").hide();
 622             $("#trial_design_more_info").show();
 623             $("#trial_multi-design_more_info").show();
 624             $("#prephelp").show();
 625             $("#show_list_of_accession_section").hide();
 626             $("#show_list_of_checks_section").hide();
 627             $("#show_list_of_unrep_accession").show();
 628             $("#show_list_of_rep_accession").show();
 629             $("#show_no_of_row_in_design").show();
 630             $("#show_no_of_col_in_design").show();
 631             $("#show_no_of_rep_times").show();
 632             $("#show_no_of_block_sequence").show();
 633             $("#show_no_of_sub_block_sequence").show();
 634             $("#crbd_show_list_of_checks_section").hide();
 635             $("#rep_count_section").hide();
 636             $("#block_number_section").hide();
 637             $("#block_size_section").hide();
 638             $("#max_block_section").hide();
 639             $("#row_number_section").hide();
 640             $("#row_number_per_block_section").hide();
 641             $("#col_number_per_block_section").hide();
 642             $("#col_number_section").hide();
 643             $("#row_number_per_block_section").hide();
 644             $("#other_parameter_section").hide();
 645             $("#design_info").hide();
 646             $('#greenhouse_default_num_plants_per_accession').hide();
 647             $("#greenhouse_num_plants_per_accession_section").hide();
 648             $('#greenhouse_default_num_plants_per_accession').hide();
 649             $("#create_trial_with_treatment_section").hide();
 650             $("#num_plants_per_plot_section").hide();
 651         }
 652
 653         else {
 654             alert("Unsupported design method");
 655         }
 656     });
 657
 658     jQuery(document).on('change', '#select_list_list_select', function() {
 659         if (jQuery("#select_design_method").val() == 'greenhouse') {
 660             greenhouse_show_num_plants_section();
 661         }
 662     });
 663     jQuery(document).on('keyup', '#greenhouse_default_num_plants_per_accession_val', function() {
 664         if (jQuery("#select_design_method").val() == 'greenhouse') {
 665             greenhouse_show_num_plants_section();
 666         }
 667     });
 668
 669     jQuery(document).on('keyup', '#greenhouse_default_num_plants_per_accession_val', function() {
 670         if (jQuery("#select_design_method").val() == 'greenhouse') {
 671             greenhouse_show_num_plants_section();
 672         }
 673     });
 674
 675     $("#show_plot_naming_options").click(function () {
 676         if ($('#show_plot_naming_options').is(':checked')) {
 677             $("#plot_naming_options").show();
 678             //$("#add_project_dialog").dialog("option", "height","auto");
 679         }
 680         else {
 681             $("#plot_naming_options").hide();
 682             //$("#add_project_dialog").dialog("option", "height","auto");
 683         }
 684     });
 685
 686     $("#show_field_map_options").click(function () {
 687       if ($('#show_field_map_options').is(':checked')) {
 688         $("#field_map_options").show();
 689       }
 690       else {
 691         $("#field_map_options").hide();
 692       }
 693     });
 694
 695     function save_experimental_design(design_json) {
 696         var list = new CXGN.List();
 697         var name = jQuery('#new_trial_name').val();
 698         var year = jQuery('#add_project_year').val();
 699         var desc = jQuery('#add_project_description').val();
 700         var trial_location = jQuery('#add_project_location').val();
 701         var block_number = jQuery('#block_number').val();
 702         var stock_list_id = jQuery('#select_list_list_select').val();
 703         var control_list_id = jQuery('#list_of_checks_section_list_select').val();
 704         var stock_list;
 705         if (stock_list_id != "") {
 706             stock_list_array = list.getList(stock_list_id);
 707             stock_list = JSON.stringify(list.getList(stock_list_id));
 708         }
 709         var control_list;
 710         if (control_list_id != "") {
 711            control_list = JSON.stringify(list.getList(control_list_id));
 712         }
 713         var design_type = jQuery('#select_design_method').val();
 714         if (design_type == "") {
 715             var design_type = jQuery('#select_multi-design_method').val();
 716         }
 717         var greenhouse_num_plants = [];
 718         if (stock_list_id != "" && design_type == 'greenhouse') {
 719             for (var i=0; i<stock_list_array.length; i++) {
 720                 var value = jQuery("input#greenhouse_num_plants_input_" + i).val();
 721                 if (value == '') {
 722                     value = 1;
 723                 }
 724                 greenhouse_num_plants.push(value);
 725             }
 726             //console.log(greenhouse_num_plants);
 727         }
 728
 729         //alert(design_type);
 730
 731         var rep_count = jQuery('#rep_count').val();
 732         var block_size = jQuery('#block_size').val();
 733         var max_block_size = jQuery('#max_block_size').val();
 734         var plot_prefix = jQuery('#plot_prefix').val();
 735         var start_number = jQuery('#start_number').val();
 736         var increment = jQuery('#increment').val();
 737         var breeding_program_name = jQuery('#select_breeding_program').val();
 738         var fieldmap_col_number = jQuery('#fieldMap_col_number').val();
 739         var fieldmap_row_number = jQuery('#fieldMap_row_number').val();
 740         var plot_layout_format = jQuery('#plot_layout_format').val();
 741         var trial_type = jQuery('#add_project_type').val();
 742
 743         jQuery.ajax({
 744            type: 'POST',
 745            timeout: 3000000,
 746            url: '/ajax/trial/save_experimental_design',
 747            dataType: "json",
 748            beforeSend: function() {
 749                jQuery('#working_modal').modal("show");
 750            },
 751            data: {
 752                 'project_name': name,
 753                 'project_description': desc,
 754                 //'trial_name': trial_name,
 755                 'year': year,
 756                 'trial_type': trial_type,
 757                 'trial_location': trial_location,
 758                 'stock_list': stock_list,
 759                 'control_list': control_list,
 760                 'design_type': design_type,
 761                 'rep_count': rep_count,
 762                 'block_number': block_number,
 763                 'block_size': block_size,
 764                 'max_block_size': max_block_size,
 765                 'plot_prefix': plot_prefix,
 766                 'start_number': start_number,
 767                 'increment': increment,
 768                 'design_json': design_json,
 769                 'breeding_program_name': breeding_program_name,
 770                 'greenhouse_num_plants': JSON.stringify(greenhouse_num_plants),
 771                 'fieldmap_col_number': fieldmap_col_number,
 772                 'fieldmap_row_number': fieldmap_row_number,
 773                 'plot_layout_format': plot_layout_format,
 774                 'has_plant_entries': num_plants_per_plot,
 775                 'has_subplot_entries': num_subplots_per_plot,
 776             },
 777             success: function (response) {
 778                 if (response.error) {
 779                     jQuery('#working_modal').modal("hide");
 780                     alert(response.error);
 781                     jQuery('#trial_design_confirm').modal("hide");
 782                 } else {
 783                     //alert('Trial design saved');
 784                     jQuery('#working_modal').modal("hide");
 785                     jQuery('#trial_saved_dialog_message').modal("show");
 786                 }
 787             },
 788             error: function () {
 789                 jQuery('#trial_saving_dialog').dialog("close");
 790                 alert('An error occurred saving the trial.');
 791                 jQuery('#trial_design_confirm').dialog("close");
 792             }
 793         });
 794     }
 795
 796     jQuery('#new_trial_confirm_submit').click(function () {
 797             save_experimental_design(design_json);
 798     });
 799
 800     $('#view_trial_layout_button').click(function () {
 801         $('#trial_design_view_layout').modal("show");
 802     });
 803
 804     function open_project_dialog() {
 805         $('#add_project_dialog').modal("show");
 806
 807         //removes any old list selects before adding current ones.
 808         //his is important so that lists that are added and will appear without page refresh
 809         $("#select_list_list_select").remove();
 810         $("#list_of_checks_section_list_select").remove();
 811
 812     $("#select_list_list_select").remove();
 813         $("#crbd_list_of_checks_section_list_select").remove();
 814     $("#list_of_unrep_accession_list_select").remove();
 815     $("#list_of_rep_accession_list_select").remove();
 816
 817         //add lists to the list select and list of checks select dropdowns.
 818         $("#select_list").append(list.listSelect("select_list", [ 'accessions' ], '', 'refresh'));
 819         $("#list_of_checks_section").append(list.listSelect("list_of_checks_section", [ 'accessions' ], '', 'refresh'));
 820
 821   //add lists to the list select and list of checks select dropdowns for CRBD.
 822         $("#crbd_list_of_checks_section").append(list.listSelect("crbd_list_of_checks_section", [ 'accessions' ], "select optional check list", 'refresh'));
 823     $("#list_of_unrep_accession").append(list.listSelect("list_of_unrep_accession", [ 'accessions' ], "Required: e.g. 200", 'refresh'));
 824     $("#list_of_rep_accession").append(list.listSelect("list_of_rep_accession", [ 'accessions' ], "Required: e.g. 119", 'refresh'));
 825
 826         //add a blank line to location select dropdown that dissappears when dropdown is opened
 827         $("#add_project_location").prepend("<option value=''></option>").val('');
 828         $("#add_project_location").one('mousedown', function () {
 829             $("option:first", this).remove();
 830         });
 831
 832         //add a blank line to list select dropdown that dissappears when dropdown is opened
 833         $("#select_list_list_select").prepend("<option value=''></option>").val('');
 834         $("#select_list_list_select").one('mousedown', function () {
 835             $("option:first", this).remove();
 836         });
 837
 838         //add a blank line to list of checks select dropdown that dissappears when dropdown is opened
 839         $("#list_of_checks_section_list_select").prepend("<option value=''></option>").val('');
 840         $("#list_of_checks_section_list_select").one('mousedown', function () {
 841             $("option:first", this).remove();
 842         });
 843
 844   $("#crbd_list_of_checks_section_list_select").prepend("<option value=''></option>").val('');
 845   $("#crbd_list_of_checks_section_list_select").one('mousedown', function () {
 846             $("option:first", this).remove();
 847   });
 848
 849         //add a blank line to design method select dropdown that dissappears when dropdown is opened
 850         $("#select_design_method").prepend("<option value=''></option>").val('');
 851         $("#select_design_method").one('mousedown', function () {
 852             $("option:first", this).remove();
 853             $("#trial_design_more_info").show();
 854             //$("#add_project_dialog").dialog("option", "height","auto");
 855             //trigger design method change events in case the first one is selected after removal of the first blank select item
 856             $("#select_design_method").change();
 857         });
 858
 859         //reset previous selections
 860         $("#select_design_method").change();
 861
 862         var method_to_use = $('.format_type:checked').val();
 863         if (method_to_use == "empty") {
 864             $("#trial_design_info").hide();
 865             $("#trial_design_more_info").hide();
 866             $("#get_file_upload_data").hide();
 867         }
 868         if (method_to_use == "create_with_upload") {
 869             $("#get_file_upload_data").show();
 870             $("#trial_design_info").hide();
 871             $("#trial_design_more_info").hide();
 872         } else {
 873             $("#get_file_upload_data").hide();
 874         }
 875         if (method_to_use == "create_with_design_tool") {
 876             $("#trial_design_info").show();
 877         } else {
 878             $("trial_design_info").hide();
 879         }
 880     }
 881
 882      $('#add_project_link').click(function () {
 883          get_select_box('years', 'add_project_year', {'auto_generate': 1 });
 884          get_select_box('trial_types', 'add_project_type', {'empty':1} );
 885          open_project_dialog();
 886      });
 887
 888     jQuery('button[name="new_trial_add_treatments"]').click(function(){
 889         jQuery('#trial_design_add_treatments').modal('show');
 890     });
 891
 892     jQuery('#new_trial_add_treatments_continue').click(function(){
 893         var treatment_name = jQuery('#new_treatment_name').val();
 894         var html = "";
 895         var design_array = JSON.parse(design_json);
 896         for (var i=0; i<design_array.length; i++){
 897             html += "<table class='table table-hover'><thead><tr><th>plot_name</th><th>accession</th><th>plot_number</th><th>block_number</th><th>rep_number</th><th>is_a_control</th><th>row_number</th><th>col_number</th><th class='table-success'>"+treatment_name+"</th></tr></thead><tbody>";
 898             var design_hash = JSON.parse(design_array[i]);
 899             for (var key in design_hash){
 900                 if (key != 'treatments'){
 901                     var plot_obj = design_hash[key];
 902                     html += "<tr><td>"+plot_obj.plot_name+"</td><td>"+plot_obj.stock_name+"</td><td>"+plot_obj.plot_number+"</td><td>"+plot_obj.block_number+"</td><td>"+plot_obj.rep_number+"</td><td>"+plot_obj.is_a_control+"</td><td>"+plot_obj.row_number+"</td><td>"+plot_obj.col_number+"</td><td><input data-plot_name='"+plot_obj.plot_name+"' data-trial_index='"+i+"' data-trial_treatment='"+treatment_name+"' type='checkbox' name='add_trial_treatment_input'/></td></tr>";
 903                 }
 904             }
 905             html += "</tbody></table>";
 906         }
 907         html += "<br/><br/>";
 908         jQuery('#trial_design_add_treatment_select_html').html(html);
 909         jQuery('#trial_design_add_treatment_select').modal('show');
 910     });
 911
 912     jQuery('#new_trial_add_treatments_submit').click(function(){
 913         var trial_treatments = [];
 914         jQuery('input[name="add_trial_treatment_input"]').each(function() {
 915             if (this.checked){
 916                 var plot_name = jQuery(this).data('plot_name');
 917                 var trial_index = jQuery(this).data('trial_index');
 918                 var trial_treatment = jQuery(this).data('trial_treatment');
 919                 if (trial_index in trial_treatments){
 920                     var trial = trial_treatments[trial_index];
 921                     if (trial_treatment in trial){
 922                         trial[trial_treatment].push(plot_name);
 923                     } else {
 924                         trial[trial_treatment] = [plot_name];
 925                     }
 926                     trial_treatments[trial_index] = trial;
 927                 } else {
 928                     obj = {};
 929                     obj[trial_treatment] = [plot_name];
 930                     trial_treatments[trial_index] = obj;
 931                 }
 932             }
 933         });
 934
 935         var new_design_array = [];
 936         var design_array = JSON.parse(design_json);
 937         for (var i=0; i<design_array.length; i++){
 938             var design_hash = JSON.parse(design_array[i]);
 939             if ('treatments' in design_hash){
 940                 treatment_obj = design_hash['treatments'];
 941                 new_treatments = trial_treatments[i];
 942                 for (var key in new_treatments){
 943                     treatment_obj[key] = new_treatments[key];
 944                 }
 945                 design_hash['treatments'] = treatment_obj;
 946             } else {
 947                 design_hash['treatments'] = trial_treatments[i];
 948             }
 949             new_design_array[i] = JSON.stringify(design_hash);
 950         }
 951         design_json = JSON.stringify(new_design_array);
 952
 953         var html = '';
 954         for (var i=0; i<new_design_array.length; i++){
 955             var design_hash = JSON.parse(new_design_array[i]);
 956             var treatments = design_hash['treatments'];
 957             //html += "Trial "+i+"<br/>";
 958             for (var key in treatments){
 959                 html += "Treatment: <b>"+key+"</b> Plots: ";
 960                 var plot_array = treatments[key];
 961                 html += plot_array.join(', ') + "<br/>";
 962             }
 963         }
 964         jQuery('#trial_design_confirm_treatments').html(html);
 965         jQuery('#trial_design_add_treatment_select').modal('hide');
 966         jQuery('#trial_design_add_treatments').modal('hide');
 967     });
 968
 969 });
 970
 971 function greenhouse_show_num_plants_section(){
 972     var list = new CXGN.List();
 973     var stock_list_id = jQuery('#select_list_list_select').val();
 974     var default_num = jQuery('#greenhouse_default_num_plants_per_accession_val').val();
 975     if (stock_list_id != "") {
 976         stock_list = list.getList(stock_list_id);
 977         //console.log(stock_list);
 978         var html = '<form class="form-horizontal">';
 979         for (var i=0; i<stock_list.length; i++){
 980             html = html + '<div class="form-group"><label class="col-sm-9 control-label">' + stock_list[i] + ': </label><div class="col-sm-3"><input class="form-control" id="greenhouse_num_plants_input_' + i + '" type="text" placeholder="'+default_num+'" value="'+default_num+'" /></div></div>';
 981         }
 982         html = html + '</form>';
 983         jQuery("#greenhouse_num_plants_per_accession").empty().html(html);
 984     }
 985 }