js/CXGN/BreedersToolbox/Accessions.js

   1 /*jslint browser: true, devel: true */
   2 /**
   3
   4 =head1 Accessions.js
   5
   6 Dialogs for managing accessions
   7
   8
   9 =head1 AUTHOR
  10
  11 Jeremy D. Edwards <jde22@cornell.edu>
  12
  13 =cut
  14
  15 */
  16
  17 var $j = jQuery.noConflict();
  18 var list = new CXGN.List();
  19 var accessionList;
  20 var accession_list_id;
  21 var validSpecies;
  22 var fuzzyResponse;
  23 var fullParsedData;
  24 var infoToAdd;
  25 var accessionListFound;
  26 var speciesNames;
  27
  28 function disable_ui() {
  29     jQuery('#working_modal').modal("show");
  30 }
  31
  32 function enable_ui() {
  33     jQuery('#working_modal').modal("hide");
  34 }
  35
  36 jQuery(document).ready(function ($) {
  37
  38     jQuery('#manage_accessions_populations_new').click(function(){
  39         jQuery("#create_population_list_div").html(list.listSelect("create_population_list_div", ["accessions"] ));
  40         jQuery('#manage_populations_add_population_dialog').modal('show');
  41     });
  42
  43     jQuery("#create_population_submit").click(function(){
  44         jQuery.ajax({
  45             type: 'POST',
  46             url: '/ajax/population/new',
  47             dataType: "json",
  48             data: {
  49                 'population_name': jQuery('#create_population_name').val(),
  50                 'accession_list_id': jQuery('#create_population_list_div_list_select').val(),
  51             },
  52             beforeSend: function(){
  53                 disable_ui();
  54             },
  55             success: function (response) {
  56                 enable_ui();
  57                 if (response.error){
  58                     alert(response.error);
  59                 }
  60                 if (response.success){
  61                     alert(response.success);
  62                 }
  63             },
  64             error: function () {
  65                 alert('An error occurred in adding population. sorry');
  66             }
  67         });
  68     });
  69
  70     jQuery('#manage_accessions_populations_onswitch').click( function() {
  71       var already_loaded_tables = jQuery('#accordion').find("table");
  72       if (already_loaded_tables.length > 0) { return; }
  73
  74       jQuery.ajax ( {
  75         url : '/ajax/manage_accessions/populations',
  76         beforeSend: function() {
  77           disable_ui();
  78         },
  79         success: function(response){
  80           var populations = response.populations;
  81           for (var i in populations) {
  82             var name = populations[i].name;
  83             var population_id = populations[i].stock_id;
  84             var accessions = populations[i].members;
  85             var table_id = name+i+"_pop_table";
  86
  87             var section_html = '<div class="row"><div class="panel panel-default"><div class="panel-heading" >';
  88             section_html += '<div class="panel-title" name="populations_members_table_toggle" data-table_id="#'+table_id+'" data-population_id="'+population_id+'" data-population_name="'+name+'"><div class="row"><div class="col-sm-6" data-toggle="collapse" data-parent="#accordion" data-target="#collapse'+i+'"><a href="#'+table_id+'" class="accordion-toggle">'+name+'</a></div><div class="col-sm-3"><a href="/stock/'+population_id+'/view"><small>[Go To Population Page]</small></a></div><div class="col-sm-3"><a name="manage_populations_add_accessions" data-population_id="'+population_id+'" data-population_name="'+name+'"><small>[Add Accessions To Population]</small></a><br/><a name="manage_populations_delete_population" data-population_id="'+population_id+'" data-population_name="'+name+'"><small>[Delete Population]</small></a></div></div></div></div>';
  89             section_html += '<div id="collapse'+i+'" class="panel-collapse collapse">';
  90             section_html += '<div class="panel-body" style="overflow:hidden"><div class="table-responsive" style="margin-top: 10px;"><table id="'+table_id+'" class="table table-hover table-striped table-bordered" width="100%"></table><div id="populations_members_add_to_list_data_'+population_id+'" style="display:none"></div><br/><div id="populations_members_add_to_list_menu_'+population_id+'"></div></div>';
  91             section_html += '</div><br/></div></div></div><br/>';
  92
  93             jQuery('#accordion').append(section_html);
  94           }
  95           enable_ui();
  96         },
  97         error: function(response) {
  98           enable_ui();
  99           alert('An error occured retrieving population data.');
 100         }
 101       });
 102     });
 103
 104     jQuery(document).on("click", "div[name='populations_members_table_toggle']", function(){
 105         var table_id = jQuery(this).data('table_id');
 106         var population_id = jQuery(this).data('population_id');
 107         var population_name = jQuery(this).data('population_name');
 108
 109         var table = jQuery(table_id).DataTable({
 110             ajax: '/ajax/manage_accessions/population_members/'+population_id,
 111             destroy: true,
 112             columns: [
 113                 { title: "Accession Name", "data": null, "render": function ( data, type, row ) { return "<a href='/stock/"+row.stock_id+"/view'>"+row.name+"</a>"; } },
 114                 { title: "Description", "data": "description" },
 115                 { title: "Synonyms", "data": "synonyms[, ]" },
 116                 { title: "Remove From Population", "data": null, "render": function ( data, type, row ) { return "<a name='populations_member_remove' data-stock_relationship_id='"+row.stock_relationship_id+"'>X</a>"; } },
 117             ],
 118             "fnInitComplete": function(oSettings, json) {
 119                 //console.log(json);
 120                 var html = "";
 121                 for(var i=0; i<json.data.length; i++){
 122                     html += json.data[i].name+"\n";
 123                 }
 124                 jQuery("#populations_members_add_to_list_data_"+population_id).html(html);
 125                 addToListMenu("populations_members_add_to_list_menu_"+population_id, "populations_members_add_to_list_data_"+population_id, {
 126                     selectText: true,
 127                     listType: 'accessions',
 128                     listName: population_name
 129                 });
 130             }
 131         });
 132
 133     });
 134
 135     var population_id;
 136     var population_name;
 137
 138     jQuery(document).on("click", "a[name='manage_populations_add_accessions']", function(){
 139         population_id = jQuery(this).data('population_id');
 140         population_name = jQuery(this).data('population_name');
 141         jQuery("#add_accession_to_population_list_div").html(list.listSelect("add_accession_to_population_list_div", ["accessions"] ));
 142         jQuery('#add_accession_population_name').html(population_name);
 143         jQuery('#manage_populations_add_accessions_dialog').modal('show');
 144     });
 145
 146     jQuery(document).on("click", "a[name='manage_populations_delete_population']", function(){
 147         population_id = jQuery(this).data('population_id');
 148         population_name = jQuery(this).data('population_name');
 149         jQuery('#delete_population_name').html(population_name);
 150         jQuery('#manage_populations_delete_dialog').modal('show');
 151     });
 152
 153     jQuery("#add_accessions_to_population_submit").click(function(){
 154         jQuery.ajax({
 155             type: 'POST',
 156             url: '/ajax/population/add_accessions',
 157             dataType: "json",
 158             data: {
 159                 'population_name': population_name,
 160                 'accession_list_id': jQuery('#add_accession_to_population_list_div_list_select').val(),
 161             },
 162             beforeSend: function(){
 163                 disable_ui();
 164             },
 165             success: function (response) {
 166                 enable_ui();
 167                 if (response.error){
 168                     alert(response.error);
 169                 }
 170                 if (response.success){
 171                     alert(response.success);
 172                 }
 173             },
 174             error: function () {
 175                 alert('An error occurred in adding accessions to population. sorry');
 176             }
 177         });
 178     });
 179
 180     jQuery("#delete_population_submit").click(function(){
 181         jQuery.ajax({
 182             type: 'POST',
 183             url: '/ajax/population/delete',
 184             dataType: "json",
 185             data: {
 186                 'population_id': population_id,
 187                 'population_name': population_name,
 188             },
 189             beforeSend: function(){
 190                 disable_ui();
 191             },
 192             success: function (response) {
 193                 enable_ui();
 194                 if (response.error){
 195                     alert(response.error);
 196                 }
 197                 if (response.success){
 198                     alert(response.success);
 199                 }
 200             },
 201             error: function () {
 202                 alert('An error occurred in deleting population. sorry');
 203             }
 204         });
 205     });
 206
 207     jQuery(document).on("click", "a[name='populations_member_remove']", function(){
 208         var stock_relationship_id= jQuery(this).data("stock_relationship_id");
 209         if (confirm("Are you sure?")){
 210             jQuery.ajax({
 211                 url: '/ajax/population/remove_member?stock_relationship_id='+stock_relationship_id,
 212                 dataType: "json",
 213                 beforeSend: function(){
 214                     disable_ui();
 215                 },
 216                 success: function (response) {
 217                     enable_ui();
 218                     if (response.error){
 219                         alert(response.error);
 220                     }
 221                     if (response.success){
 222                         alert(response.success);
 223                     }
 224                 },
 225                 error: function () {
 226                     alert('An error occurred in removing accession from population. sorry');
 227                 }
 228             });
 229         }
 230     });
 231
 232     function add_accessions(full_info, species_names) {
 233         //console.log(full_info);
 234         $.ajax({
 235             type: 'POST',
 236             url: '/ajax/accession_list/add',
 237             dataType: "json",
 238             timeout: 36000000,
 239             data: {
 240                 'full_info': JSON.stringify(full_info),
 241                 'allowed_organisms': JSON.stringify(species_names),
 242             },
 243             beforeSend: function(){
 244                 disable_ui();
 245             },
 246             success: function (response) {
 247                 enable_ui();
 248                 if (response.error) {
 249                     alert(response.error);
 250                 } else {
 251                     var html = 'The following stocks were added!<br/>';
 252                     for (var i=0; i<response.added.length; i++){
 253                         html = html + '<a href="/stock/'+response.added[i][0]+'/view">'+response.added[i][1]+'</a><br/>';
 254                     }
 255                     jQuery('#add_accessions_saved_message').html(html);
 256                     jQuery('#add_accessions_saved_message_modal').modal('show');
 257                 }
 258             },
 259             error: function () {
 260                 alert('An error occurred in processing. sorry');
 261             }
 262         });
 263     }
 264
 265     function verify_species_name() {
 266         var speciesName = $("#species_name_input").val();
 267         validSpecies = 0;
 268         $.ajax({
 269             type: 'GET',
 270             url: '/organism/verify_name',
 271             dataType: "json",
 272             data: {
 273                 'species_name': speciesName,
 274             },
 275             success: function (response) {
 276                 if (response.error) {
 277                     alert(response.error);
 278                     validSpecies = 0;
 279                 } else {
 280                     validSpecies = 1;
 281                 }
 282             },
 283             error: function () {
 284                 alert('An error occurred verifying species name. sorry');
 285                 validSpecies = 0;
 286             }
 287         });
 288     }
 289
 290     $('#species_name_input').focusout(function () {
 291         verify_species_name();
 292     });
 293
 294     $('#review_absent_accessions_submit').click(function () {
 295         if (fullParsedData == undefined){
 296             var speciesName = $("#species_name_input").val();
 297             var populationName = $("#population_name_input").val();
 298             var organizationName = $("#organization_name_input").val();
 299             var accessionsToAdd = accessionList;
 300             if (!speciesName) {
 301                 alert("Species name required");
 302                 return;
 303             }
 304             if (!populationName) {
 305                 populationName = '';
 306             }
 307             if (!accessionsToAdd || accessionsToAdd.length == 0) {
 308                 alert("No accessions to add");
 309                 return;
 310             }
 311             for(var i=0; i<accessionsToAdd.length; i++){
 312                 infoToAdd.push({
 313                     'species':speciesName,
 314                     'defaultDisplayName':accessionsToAdd[i],
 315                     'germplasmName':accessionsToAdd[i],
 316                     'organizationName':organizationName,
 317                     'populationName':populationName,
 318                 });
 319                 speciesNames.push(speciesName);
 320             }
 321         }
 322         add_accessions(infoToAdd, speciesNames);
 323         $('#review_absent_dialog').modal("hide");
 324         //window.location.href='/breeders/accessions';
 325     });
 326
 327     $('#new_accessions_submit').click(function () {
 328         var selected_tab = jQuery('#add_new_accessions_tab_select .active').text()
 329         if (selected_tab == 'Using Lists'){
 330             accession_list_id = $('#list_div_list_select').val();
 331             fullParsedData = undefined;
 332             verify_accession_list(accession_list_id);
 333         } else if (selected_tab == 'Uploading a File'){
 334             var uploadFile = jQuery("#new_accessions_upload_file").val();
 335             jQuery('#upload_new_accessions_form').attr("action", "/ajax/accessions/verify_accessions_file");
 336             if (uploadFile === '') {
 337                 alert("Please select a file");
 338                 return;
 339             }
 340             jQuery("#upload_new_accessions_form").submit();
 341         }
 342         $('#add_accessions_dialog').modal("hide");
 343     });
 344
 345     jQuery('#upload_new_accessions_form').iframePostForm({
 346         json: true,
 347         post: function () {
 348             var uploadedSeedlotFile = jQuery("#new_accessions_upload_file").val();
 349             jQuery('#working_modal').modal("show");
 350             if (uploadedSeedlotFile === '') {
 351                 jQuery('#working_modal').modal("hide");
 352                 alert("No file selected");
 353             }
 354         },
 355         complete: function (response) {
 356             console.log(response);
 357             jQuery('#working_modal').modal("hide");
 358
 359             if (response.error_string) {
 360                 fullParsedData = undefined;
 361                 alert(response.error_string);
 362                 return;
 363             }
 364             if (response.success) {
 365                 fullParsedData = response.full_data;
 366                 review_verification_results(response, response.list_id);
 367             }
 368         }
 369     });
 370
 371     $('[name="add_accessions_link"]').click(function () {
 372         var list = new CXGN.List();
 373         accessionList;
 374         accession_list_id;
 375         validSpecies;
 376         fuzzyResponse;
 377         fullParsedData;
 378         infoToAdd;
 379         accessionListFound;
 380         speciesNames;
 381         $('#add_accessions_dialog').modal("show");
 382         $('#review_found_matches_dialog').modal("hide");
 383         $('#review_fuzzy_matches_dialog').modal("hide");
 384         $('#review_absent_dialog').modal("hide");
 385         $("#list_div").html(list.listSelect("list_div", ["accessions"] ));
 386     });
 387
 388     jQuery('#accessions_upload_spreadsheet_format_info').click(function(){
 389         jQuery('#accessions_upload_spreadsheet_format_modal').modal("show");
 390     });
 391
 392     $('body').on('hidden.bs.modal', '.modal', function () {
 393         $(this).removeData('bs.modal');
 394     });
 395
 396         $(document).on('change', 'select[name="fuzzy_option"]', function() {
 397                 var value = $(this).val();
 398                 if ($('#add_accession_fuzzy_option_all').is(":checked")){
 399                         $('select[name="fuzzy_option"] option[value='+value+']').attr('selected','selected');
 400                 }
 401         });
 402
 403     $('#review_fuzzy_matches_download').click(function(){
 404         //console.log(fuzzyResponse);
 405         openWindowWithPost(JSON.stringify(fuzzyResponse));
 406         //window.open('/ajax/accession_list/fuzzy_download?fuzzy_response='+JSON.stringify(fuzzyResponse));
 407     });
 408
 409     jQuery('#review_absent_dialog').on('shown.bs.modal', function (e) {
 410         jQuery('#infoToAdd_updated_table').DataTable({});
 411         jQuery('#infoToAdd_new_table').DataTable({});
 412     });
 413
 414 });
 415
 416 function openWindowWithPost(fuzzyResponse) {
 417     var f = document.getElementById('add_accession_fuzzy_match_download');
 418     f.fuzzy_response.value = fuzzyResponse;
 419     window.open('', 'TheWindow');
 420     f.submit();
 421 }
 422
 423 function verify_accession_list(accession_list_id) {
 424     accession_list = JSON.stringify(list.getList(accession_list_id));
 425     doFuzzySearch = jQuery('#fuzzy_check').attr('checked'); //fuzzy search is always checked in a hidden input
 426     //alert("should be disabled");
 427     //alert(accession_list);
 428
 429     jQuery.ajax({
 430         type: 'POST',
 431         url: '/ajax/accession_list/verify',
 432         timeout: 36000000,
 433         //async: false,
 434         dataType: "json",
 435         data: {
 436             'accession_list': accession_list,
 437             'do_fuzzy_search': doFuzzySearch,
 438         },
 439         beforeSend: function(){
 440             disable_ui();
 441         },
 442         success: function (response) {
 443             enable_ui();
 444             if (response.error) {
 445                 alert(response.error);
 446             } else {
 447                 review_verification_results(response, accession_list_id);
 448             }
 449         },
 450         error: function () {
 451             enable_ui();
 452             alert('An error occurred in processing. sorry');
 453         }
 454     });
 455 }
 456
 457 function review_verification_results(verifyResponse, accession_list_id){
 458     var i;
 459     var j;
 460     accessionListFound = {};
 461     accessionList = [];
 462     infoToAdd = [];
 463     speciesNames = [];
 464     //console.log(verifyResponse);
 465     //console.log(accession_list_id);
 466
 467     if (verifyResponse.found) {
 468         jQuery('#count_of_found_accessions').html("Total number already in the database("+verifyResponse.found.length+")");
 469         var found_html = '<table class="table table-bordered" id="found_accessions_table"><thead><tr><th>Search Name</th><th>Found in Database</th></tr></thead><tbody>';
 470         for( i=0; i < verifyResponse.found.length; i++){
 471             found_html = found_html
 472                 +'<tr><td>'+verifyResponse.found[i].matched_string
 473                 +'</td><td>'
 474                 +verifyResponse.found[i].unique_name
 475                 +'</td></tr>';
 476             accessionListFound[verifyResponse.found[i].unique_name] = 1;
 477         }
 478         found_html = found_html +'</tbody></table>';
 479
 480         jQuery('#view_found_matches').html(found_html);
 481
 482         jQuery('#review_found_matches_dialog').modal('show');
 483
 484         jQuery('#found_accessions_table').DataTable({});
 485
 486         accessionList = verifyResponse.absent;
 487
 488     }
 489
 490     if (verifyResponse.fuzzy.length > 0) {
 491         fuzzyResponse = verifyResponse.fuzzy;
 492         var fuzzy_html = '<table id="add_accession_fuzzy_table" class="table"><thead><tr><th class="col-xs-4">Name in Your List</th><th class="col-xs-4">Existing Name(s) in Database</th><th class="col-xs-4">Options&nbsp;&nbsp;&nbsp&nbsp;<input type="checkbox" id="add_accession_fuzzy_option_all"/> Use Same Option for All</th></tr></thead><tbody>';
 493         for( i=0; i < verifyResponse.fuzzy.length; i++) {
 494             fuzzy_html = fuzzy_html + '<tr id="add_accession_fuzzy_option_form'+i+'"><td>'+ verifyResponse.fuzzy[i].name + '<input type="hidden" name="fuzzy_name" value="'+ verifyResponse.fuzzy[i].name + '" /></td>';
 495             fuzzy_html = fuzzy_html + '<td><select class="form-control" name ="fuzzy_select">';
 496             for(j=0; j < verifyResponse.fuzzy[i].matches.length; j++){
 497                 if (verifyResponse.fuzzy[i].matches[j].is_synonym){
 498                     fuzzy_html = fuzzy_html + '<option value="' + verifyResponse.fuzzy[i].matches[j].synonym_of + '">' + verifyResponse.fuzzy[i].matches[j].name + ' (SYNONYM OF: '+verifyResponse.fuzzy[i].matches[j].synonym_of+')</option>';
 499                 } else {
 500                     fuzzy_html = fuzzy_html + '<option value="' + verifyResponse.fuzzy[i].matches[j].name + '">' + verifyResponse.fuzzy[i].matches[j].name + '</option>';
 501                 }
 502             }
 503             fuzzy_html = fuzzy_html + '</select></td><td><select class="form-control" name="fuzzy_option"><option value="keep">Continue saving name in your list</option><option value="replace">Replace name in your list with selected existing name</option><option value="remove">Remove name in your list and ignore</option><option value="synonymize">Add name in your list as a synonym to selected existing name</option></select></td></tr>';
 504         }
 505         fuzzy_html = fuzzy_html + '</tbody></table>';
 506         jQuery('#view_fuzzy_matches').html(fuzzy_html);
 507
 508         //Add to absent
 509         for( i=0; i < verifyResponse.fuzzy.length; i++) {
 510             verifyResponse.absent.push(verifyResponse.fuzzy[i].name);
 511         }
 512         accessionList = verifyResponse.absent;
 513     }
 514
 515     if (verifyResponse.full_data){
 516         for(var key in verifyResponse.full_data){
 517             infoToAdd.push(verifyResponse.full_data[key]);
 518             speciesNames.push(verifyResponse.full_data[key]['species'])
 519         }
 520     }
 521
 522     jQuery('#review_found_matches_hide').click(function(){
 523         if (verifyResponse.fuzzy.length > 0){
 524             jQuery('#review_fuzzy_matches_dialog').modal('show');
 525         } else {
 526             jQuery('#review_fuzzy_matches_dialog').modal('hide');
 527             if (verifyResponse.absent.length > 0 || infoToAdd.length>0){
 528                 populate_review_absent_dialog(verifyResponse.absent, infoToAdd);
 529             } else {
 530                 alert('All accessions in your list are now saved in the database. 3');
 531             }
 532         }
 533     });
 534
 535     jQuery(document).on('click', '#review_fuzzy_matches_continue', function(){
 536         process_fuzzy_options(accession_list_id);
 537     });
 538
 539 }
 540
 541 function populate_review_absent_dialog(absent, infoToAdd){
 542     console.log(infoToAdd);
 543     console.log(absent);
 544
 545     jQuery('#count_of_absent_accessions').html("Total number to be added("+absent.length+")");
 546     var absent_html = '';
 547     jQuery("#species_name_input").autocomplete({
 548         source: '/organism/autocomplete'
 549     });
 550
 551     for( i=0; i < absent.length; i++){
 552         absent_html = absent_html
 553         +'<div class="left">'+absent[i]
 554         +'</div>';
 555     }
 556     jQuery('#view_absent').html(absent_html);
 557     jQuery('#view_infoToAdd').html('');
 558
 559     if (infoToAdd.length>0){
 560         var infoToAdd_html = '<div class="well"><b>The following new accessions will be added:</b><br/><br/><table id="infoToAdd_new_table" class="table table-bordered table-hover"><thead><tr><th>uniquename</th><th>properties</th></tr></thead><tbody>';
 561         for( i=0; i < infoToAdd.length; i++){
 562             if (!('stock_id' in infoToAdd[i])){
 563                 infoToAdd_html = infoToAdd_html + '<tr><td>'+infoToAdd[i]['germplasmName']+'</td>';
 564                 var infoToAdd_properties_html = '';
 565                 for (key in infoToAdd[i]){
 566                     if (key != 'uniquename'){
 567                         infoToAdd_properties_html = infoToAdd_properties_html + key+':'+infoToAdd[i][key]+'   ';
 568                     }
 569                 }
 570                 infoToAdd_html = infoToAdd_html + '<td>'+infoToAdd_properties_html+'</td></tr>';
 571             }
 572         }
 573         infoToAdd_html = infoToAdd_html + "</tbody></table></div>";
 574         infoToAdd_html = infoToAdd_html + '<div class="well"><b>The following accessions will be updated:</b><br/><br/><table id="infoToAdd_updated_table" class="table table-bordered table-hover"><thead><tr><th>uniquename</th><th>properties</th></tr></thead><tbody>';
 575         for( i=0; i < infoToAdd.length; i++){
 576             if ('stock_id' in infoToAdd[i]){
 577                 infoToAdd_html = infoToAdd_html + '<tr><td>'+infoToAdd[i]['germplasmName']+'</td>';
 578                 var infoToAdd_properties_html = '';
 579                 for (key in infoToAdd[i]){
 580                     if (key != 'uniquename'){
 581                         infoToAdd_properties_html = infoToAdd_properties_html + key+':'+infoToAdd[i][key]+'   ';
 582                     }
 583                 }
 584                 infoToAdd_html = infoToAdd_html + '<td>'+infoToAdd_properties_html+'</td></tr>';
 585             }
 586         }
 587         infoToAdd_html = infoToAdd_html + "</tbody></table></div>";
 588         jQuery('#view_infoToAdd').html(infoToAdd_html);
 589         jQuery('#add_accessions_using_list_inputs').hide();
 590     } else {
 591         jQuery('#add_accessions_using_list_inputs').show();
 592     }
 593
 594     jQuery('#review_absent_dialog').modal('show');
 595 }
 596
 597 function process_fuzzy_options(accession_list_id) {
 598     var data={};
 599     jQuery('#add_accession_fuzzy_table').find('tr').each(function(){
 600         var id=jQuery(this).attr('id');
 601         if (id !== undefined){
 602             var row={};
 603             jQuery(this).find('input,select').each(function(){
 604                 var type = jQuery(this).attr('type');
 605                 if (type == 'radio'){
 606                     if (jQuery(this).is(':checked')){
 607                         row[jQuery(this).attr('name')]=jQuery(this).val();
 608                     }
 609                 } else {
 610                     row[jQuery(this).attr('name')]=jQuery(this).val();
 611                 }
 612             });
 613             data[id]=row;
 614         }
 615     });
 616     //console.log(data);
 617
 618     jQuery.ajax({
 619         type: 'POST',
 620         url: '/ajax/accession_list/fuzzy_options',
 621         dataType: "json",
 622         data: {
 623             'accession_list_id': accession_list_id,
 624             'fuzzy_option_data': JSON.stringify(data),
 625             'names_to_add': JSON.stringify(accessionList)
 626         },
 627         success: function (response) {
 628             //console.log(response);
 629             infoToAdd = [];
 630             speciesNames = [];
 631             accessionList = response.names_to_add;
 632             if (accessionList.length > 0){
 633
 634                 if (fullParsedData != null){
 635                     for (var i=0; i<accessionList.length; i++){
 636                         var accession_name = accessionList[i];
 637                         infoToAdd.push(fullParsedData[accession_name]);
 638                         speciesNames.push(fullParsedData[accession_name]['species']);
 639                     }
 640                     for (var i=0; i<accessionListFound.length; i++){
 641                         var accession_name = accessionListFound[i];
 642                         infoToAdd.push(fullParsedData[accession_name]);
 643                         speciesNames.push(fullParsedData[accession_name]['species']);
 644                     }
 645                 }
 646
 647                 populate_review_absent_dialog(accessionList, infoToAdd);
 648                 jQuery('#review_absent_dialog').modal('show');
 649             } else {
 650                 alert('All accessions in your list are now saved in the database. 2');
 651             }
 652         },
 653         error: function () {
 654             alert('An error occurred checking your fuzzy options! Do not try to add a synonym to a synonym! Also do not use any special characters!');
 655         }
 656     });
 657 }
 658