js/solGS/listTypeSelectionPopulation.js

   1
   2
   3 /**
   4 selection population upload from lists
   5 and files. Run prediction model on uploaded selection population
   6 and display output.
   7
   8 Isaak Y Tecle
   9 iyt2@cornell.edu
  10 */
  11
  12 JSAN.use("CXGN.List");
  13 JSAN.use("jquery.blockUI");
  14
  15
  16 jQuery(document).ready( function() {
  17     var list = new CXGN.List();
  18     var listMenu = list.listSelect("prediction_genotypes", ["accessions"]);
  19     var relevant =[];
  20
  21     if (listMenu.match(/option/) != null) {
  22
  23         jQuery("#prediction_genotypes_list").append(listMenu);
  24
  25         } else {
  26
  27             jQuery("#prediction_genotypes_list").append("<select><option>no lists found</option></select>");
  28         }
  29
  30     });
  31
  32
  33 jQuery(document).ready( function() {
  34         var listId;
  35
  36         jQuery("<option>", {value: '', selected: true}).prependTo("#prediction_genotypes_list_select");
  37         jQuery("#prediction_genotypes_list_select").change(function() {
  38
  39                 listId = jQuery(this).find("option:selected").val();
  40
  41                 if(listId) {
  42                     var cnt = 1;
  43                     jQuery("#prediction_genotypes_list_upload").click(function() {
  44                         if(cnt === 1) {
  45                             loadGenotypesList(listId);
  46                         }
  47                         cnt = cnt + 1 ;
  48                     });
  49                 }
  50             });
  51     });
  52
  53
  54 function getGenotypesList(listId) {
  55
  56     var list = new CXGN.List();
  57     var genotypesList;
  58
  59     if (! listId == "") {
  60         genotypesList = list.getListData(listId);
  61     }
  62
  63     var listName = list.listNameById(listId);
  64     var listType;// = list.getListType(listId);
  65
  66     return {'name'      : listName,
  67             'list'      : genotypesList.elements,
  68             'list_type' : listType,
  69             };
  70 }
  71
  72
  73 function loadGenotypesList(listId) {
  74
  75     var genoList       = getGenotypesList(listId);
  76     var listName       = genoList.name;
  77     var list           = genoList.list;
  78     var modelId        = getModelId();
  79     var traitId        = getTraitId();
  80     var selectionPopId = listId;
  81
  82     if ( list.length === 0) {
  83         alert('The list is empty. Please select a list with content.' );
  84     }
  85     else {
  86
  87         jQuery.blockUI.defaults.applyPlatformOpacityRules = false;
  88         jQuery.blockUI({message: 'Please wait..'});
  89
  90         list = JSON.stringify(list);
  91
  92         jQuery.ajax({
  93                 type: 'POST',
  94                     dataType: 'json',
  95                     data: {'id': 'uploaded_' + listId, 'name': listName, 'list': list},
  96                     url: '/solgs/upload/prediction/genotypes/list',
  97
  98                     success: function(response) {
  99
 100                     if (response.status == 'success') {
 101
 102                         var uploadedSelPops = jQuery("#uploaded_selection_pops_table").doesExist();
 103
 104                         if (uploadedSelPops == false) {
 105
 106                             uploadedSelPops = getUserUploadedSelPop(listId);
 107                             jQuery("#uploaded_selection_populations").append(uploadedSelPops).show();
 108
 109                         }
 110                         else {
 111
 112                             var url =   '\'/solgs/model/'+ modelId + '/uploaded/prediction/'+ selectionPopId + '\'' ;
 113                             var listIdArg = '\'' + listId +'\'';
 114                             var listSource = '\'from_db\'';
 115
 116                             var popIdName   = {id : 'uploaded_' + listId, name: listName, pop_type: 'list_selection'};
 117                             popIdName       = JSON.stringify(popIdName);
 118                             var hiddenInput =  '<input type="hidden" value=\'' + popIdName + '\'/>';
 119
 120                             var addRow = '<tr><td>'
 121                                 +'<a href="#" onclick="javascript:loadPredictionOutput(' + url + ','
 122                                 + listIdArg + ',' + listSource + '); return false;">' + '<data>'+ hiddenInput + '</data>'
 123                                 + listName + '</a>'
 124                                 + '</td>'
 125                                 + '<td id="list_prediction_output_' + listId +  '">'
 126                                 + '<a href="#" onclick="javascript:loadPredictionOutput(' + url + ','
 127                                 + listIdArg + ',' + listSource + '); return false;">'
 128                                 + '[ Predict ]'+ '</a>'
 129                                 + '</td><tr>';
 130
 131                             var tdId = '#list_prediction_output_' + listId;
 132                             var addedRow = jQuery(tdId).doesExist();
 133
 134                             if (addedRow == false) {
 135                                 jQuery("#uploaded_selection_pops_table tr:last").after(addRow);
 136
 137                             }
 138                         }
 139                         jQuery.unblockUI();
 140
 141                     } else {
 142
 143                         alert("Error occured while uploading the list of selection genotypes.");
 144                         jQuery.unblockUI();
 145                     }
 146
 147                 },
 148                     error: function(res) {
 149
 150                     jQuery.unblockUI();
 151                     alert("Error occured while uploading the list of selection genotypes.\n\n" + res.responseText);
 152                 }
 153             });
 154     }
 155 }
 156
 157
 158 jQuery.fn.doesExist = function(){
 159         return jQuery(this).length > 0;
 160  };
 161
 162
 163 function getModelId () {
 164
 165     var modelId;
 166     var modelIdExists = jQuery("#model_id").doesExist();
 167     var comboPopsIdExists = jQuery("#combo_pops_id").doesExist();
 168
 169     if ( modelIdExists == true ) {
 170         modelId = jQuery("#model_id").val();
 171     }
 172     else if ( comboPopsIdExists == true ) {
 173         modelId = jQuery("#combo_pops_id").val();
 174     }
 175
 176     return modelId;
 177 }
 178
 179
 180 function getTraitId () {
 181
 182     var traitId;
 183     var traitIdExists = jQuery("#trait_id").doesExist();
 184
 185     if ( traitIdExists == true ) {
 186         traitId = jQuery("#trait_id").val();
 187     }
 188
 189     return traitId;
 190 }
 191
 192
 193 function getUserUploadedSelPop (listId) {
 194
 195     var genoList       = getGenotypesList(listId);
 196     var listName       = genoList.name;
 197     var list           = genoList.list;
 198     var modelId        = getModelId();
 199     var traitId        = getTraitId();
 200     var selectionPopId = listId;
 201
 202     var url         =   '\'/solgs/model/'+ modelId + '/uploaded/prediction/'+ selectionPopId + '\'' ;
 203     var listIdArg   = '\'' + listId +'\'';
 204     var listSource  = '\'from_db\'';
 205     var popIdName   = {'id' : 'uploaded_' + listId, 'name' : listName, 'pop_type': 'list_selection'};
 206     popIdName       = JSON.stringify(popIdName);
 207     var hiddenInput =  '<input type="hidden" value=\'' + popIdName + '\'/>';
 208
 209     var uploadedSelPop ='<table id="uploaded_selection_pops_table" style="width:100%;text-align:left"><tr>'
 210                                 + '<th>List-based selection population</th>'
 211                                 + '<th>Predict GEBVs</th>'
 212                                 +'</tr>'
 213                                 + '<tr>'
 214                                 + '<td>'
 215                                 + '<a href="#" onclick="javascript:loadPredictionOutput(' + url + ','
 216                                 + listIdArg + ',' + listSource + '); return false;">' + '<data>'+ hiddenInput + '</data>'
 217                                 + listName + '</a>'
 218                                 + '</td>'
 219                                 + '<td id="list_prediction_output_' + listId +  '">'
 220                                 + '<a href="#" onclick="javascript:loadPredictionOutput(' + url + ','
 221                                 + listIdArg + ',' + listSource + '); return false;">'
 222                                 + '[ Predict ]'+ '</a>'
 223                                 + '</td></tr></table>';
 224
 225     return uploadedSelPop;
 226 }
 227
 228
 229 function loadPredictionOutput (url, listId, listSource) {
 230
 231     var traitId = getTraitId();
 232     var modelId = getModelId();
 233
 234     jQuery.blockUI.defaults.applyPlatformOpacityRules = false;
 235     jQuery.blockUI({message: 'Please wait..'});
 236
 237     jQuery.ajax({
 238         type: 'POST',
 239         url: url,
 240         dataType: 'json',
 241         data: {
 242             'uploaded_prediction': 1,
 243             'trait_id': traitId,
 244             'model_id': modelId,
 245             'prediction_id': listId,
 246             'list_source': listSource,
 247         },
 248
 249         success: function (response) {
 250
 251             if (response.status == 'success') {
 252
 253                 var tdId = '#list_prediction_output_' + listId;
 254                 jQuery(tdId).html(response.output);
 255
 256                 var page = document.URL;
 257
 258                 if (page.match('/traits/all/population/') != null) {
 259                     listSelectionIndexPopulations();
 260                     listGenCorPopulations();
 261                 }
 262
 263                 jQuery.unblockUI();
 264             }
 265             else {
 266                 if(response.status == 'failed') {
 267                     alert("Error occured while uploading the list of selection genotypes.");
 268                 } else {
 269                     alert(response.status);
 270                 }
 271
 272                 jQuery.unblockUI();
 273             }
 274         },
 275
 276         error: function(response) {
 277             alert('error: ' + res.responseText);
 278
 279         }
 280     });
 281
 282 }
 283