js/solGS/combineTrials.js

   1 /**
   2 * trials search, selections to combine etc...
   3 * @author Isaak Y Tecle <iyt2@cornell.edu>
   4 *
   5 */
   6
   7 JSAN.use("Prototype");
   8 JSAN.use('jquery.blockUI');
   9
  10
  11 function getPopIds () {
  12
  13     var searchedPopsList = jQuery("#searched_trials_table tr").length;
  14
  15     var tableId;
  16
  17     if (searchedPopsList) {
  18         tableId = 'searched_trials_table';
  19     } else {
  20         tableId = 'all_trials_table';
  21     }
  22
  23     jQuery('#' +tableId + ' tr').filter(':has(:checkbox:checked)')
  24         .bind('click',  function() {
  25
  26             jQuery("#done_selecting").val('Done selecting');
  27             var td =  jQuery(this).html();
  28
  29             var selectedTrial = '<tr>' + td + '</tr>';
  30
  31             jQuery("#selected_trials_table tr:last").after(selectedTrial);
  32
  33             jQuery("#selected_trials_table tr").each( function() {
  34                 jQuery(this).find("input[type=checkbox]")
  35                     .attr('onclick', 'removeSelectedTrial()')
  36                     .prop('checked', true);
  37             });
  38         });
  39
  40     jQuery("#selected_trials").show();
  41     jQuery("#combine_trials_div").show();
  42     jQuery("#search_again_div").show();
  43
  44 }
  45
  46
  47 jQuery(document).ready(function() {
  48     jQuery('#done_selecting').on('click', function() {
  49         hideTrialsList();
  50     });
  51
  52 });
  53
  54
  55 function hideTrialsList() {
  56     jQuery("#all_trials_div").empty();
  57     jQuery("#searched_trials_div").empty();
  58     jQuery("#done_selecting_div").hide();
  59     jQuery("#all_trials_search_message").hide();
  60
  61 }
  62
  63
  64 function removeSelectedTrial() {
  65
  66     jQuery("#selected_trials_table tr").on("change", function() {
  67
  68         jQuery(this).remove();
  69
  70         if (jQuery("#selected_trials_table td").length == 0) {
  71             jQuery("#selected_trials").hide();
  72             jQuery("#combine_trials_div").hide();
  73             jQuery("#search_again_div").hide();
  74             jQuery("#done_selecting").val('Select');
  75
  76             searchAgain();
  77         }
  78     });
  79
  80 }
  81
  82
  83 jQuery(document).ready(function() {
  84     jQuery('#search_again').on('click', function() {
  85         searchAgain();
  86     });
  87
  88 });
  89
  90
  91 function searchAgain () {
  92
  93     var url = window.location.pathname;
  94
  95     if (url.match(/solgs\/search\/trials\/trait\//) != null) {
  96         var traitId = jQuery("input[name='trait_id']").val();
  97         url = '/solgs/search/result/populations/' + traitId;
  98     } else {
  99         url = '/solgs/search/trials/';
 100     }
 101
 102     jQuery('#all_trials_div').empty();
 103     jQuery("#searched_trials_div").empty();
 104     searchAllTrials(url);
 105     jQuery("#all_trials_search_message").show();
 106     jQuery("#done_selecting_div").show();
 107     jQuery("#done_selecting").val('Select');
 108
 109 }
 110
 111
 112 jQuery(document).ready(function() {
 113     jQuery('#combine_trait_trials').on('click', function() {
 114         //combineTraitTrials();
 115         getCombinedPopsId();
 116     });
 117
 118 });
 119
 120
 121 function combineTraitTrials () {
 122     var trId = getTraitId();
 123
 124     var trialIds = getSelectedTrials();
 125
 126     var action = "/solgs/combine/populations/trait/" + trId;
 127     var selectedPops = trId + "=" + trialIds + '&' + 'combine=combine';
 128
 129     jQuery.blockUI.defaults.applyPlatformOpacityRules = false;
 130     jQuery.blockUI({message: 'Please wait..'});
 131
 132     jQuery.ajax({
 133         type: 'POST',
 134         dataType: "json",
 135         url: action,
 136         data: selectedPops,
 137         success: function(res) {
 138
 139             if (res.status) {
 140
 141                 var comboPopsId = res.combo_pops_id;
 142                 var newUrl = '/solgs/model/combined/populations/' + comboPopsId + '/trait/' + trId;
 143
 144                 if (comboPopsId) {
 145                     window.location.href = newUrl;
 146                     jQuery.unblockUI();
 147                 } else if (res.redirect_url) {
 148                     goToSingleTrialPage(res.redirect_url);
 149                     jQuery.unblockUI();
 150                 }
 151
 152             } else {
 153
 154                 if (res.not_matching_pops){
 155                     alert('populations ' + res.not_matching_pops +
 156                           ' were genotyped using different marker sets. ' +
 157                           'Please make new selections to combine.' );
 158                     window.location.href =  '/solgs/search/result/populations/' + trId;
 159                 }
 160
 161                 if (res.redirect_url) {
 162                     window.location.href = res.redirect_url;
 163                 }
 164             }
 165         }
 166     });
 167
 168 }
 169
 170
 171 jQuery(document).ready(function() {
 172     jQuery('#combine_trials').on('click', function() {
 173         getCombinedPopsId();
 174     });
 175
 176 });
 177
 178
 179 function getCombinedPopsId() {
 180
 181     var comboPopsList = getSelectedTrials();
 182     var trialsIds     = comboPopsList.join(",");
 183     var traitId       = getTraitId();
 184     var action        = "/solgs/get/combined/populations/id";
 185
 186     jQuery.ajax({
 187         type: 'POST',
 188         dataType: "json",
 189         url: action,
 190         data: {'trials': trialsIds},
 191         success: function(res) {
 192             if (res.status) {
 193                 var comboPopsId = res.combo_pops_id;
 194
 195                 if (window.Prototype) {
 196                     delete Array.prototype.toJSON;
 197                 }
 198
 199                  var args = {
 200                      'combo_pops_id'   : [ comboPopsId ],
 201                      'combo_pops_list' : comboPopsList,
 202                      'analysis_type'   : 'combine populations',
 203                      'data_set_type'   : 'multiple populations',
 204                      'trait_id'        : traitId,
 205                     };
 206
 207                 var referer = window.location.href;
 208                 var page;
 209
 210                 if (referer.match(/search\/trials\/trait\//)) {
 211                      page = '/solgs/model/combined/trials/' + comboPopsId + '/trait/' + traitId;
 212
 213                 } else {
 214                     page = '/solgs/populations/combined/' + comboPopsId;
 215                 }
 216
 217                 solGS.waitPage(page, args);
 218             }
 219         },
 220         error: function(res) {
 221             //combinedPopsId = 0;
 222         }
 223     });
 224
 225    // return combinedPopsId;
 226
 227 }
 228
 229
 230 function retrievePopsData() {
 231
 232     var trialsIds = getSelectedTrials();
 233     trialsIds = trialsIds.join(",");
 234
 235     var action = "/solgs/retrieve/populations/data";
 236
 237     jQuery.blockUI.defaults.applyPlatformOpacityRules = false;
 238     jQuery.blockUI({message: 'Please wait..'});
 239
 240     jQuery.ajax({
 241         type: 'POST',
 242         dataType: "json",
 243         url: action,
 244         data: {'trials': trialsIds},
 245         success: function(res) {
 246             if (res.not_matching_pops == null) {
 247
 248                 var combinedPopsId = res.combined_pops_id;
 249
 250                 if(combinedPopsId) {
 251                     goToCombinedTrialsPage(combinedPopsId);
 252                     jQuery.unblockUI();
 253                 }else if (res.redirect_url) {
 254                     goToSingleTrialPage(res.redirect_url);
 255                     jQuery.unblockUI();
 256                 }
 257
 258             } else if(res.not_matching_pops )  {
 259
 260                 jQuery.unblockUI();
 261                 alert('populations ' + res.not_matching_pops +
 262                       ' were genotyped using different marker sets. ' +
 263                       'Please make new selections to combine.' );
 264
 265             }
 266         },
 267         error: function(res) {
 268             jQuery.unblockUI();
 269             alert('An error occured retrieving phenotype' +
 270                   'and genotype data for trials..');
 271         }
 272     });
 273 }
 274
 275
 276 function getSelectedTrials () {
 277
 278     var trialIds = [];
 279
 280     if (jQuery("#selected_trials_table").length) {
 281         jQuery("#selected_trials_table tr").each(function () {
 282             var trialId = jQuery(this).find("input[type=checkbox]").val();
 283
 284             if (trialId) {
 285                 trialIds.push(trialId);
 286             }
 287         });
 288     }
 289
 290     trialIds = trialIds.sort();
 291
 292     return trialIds;
 293
 294 }
 295
 296
 297 function goToCombinedTrialsPage(combinedPopsId) {
 298
 299     var action = '/solgs/populations/combined/' + combinedPopsId;
 300
 301     if (combinedPopsId) {
 302         window.location.href = action;
 303     }
 304 }
 305
 306
 307 function goToSingleTrialPage(url) {
 308
 309     if (url) {
 310         window.location.href = url;
 311     }
 312 }
 313
 314
 315 function  getTraitId() {
 316
 317     var id = jQuery("input[name='trait_id']").val();
 318     return id;
 319 }
 320
 321
 322 Array.prototype.unique =
 323     function() {
 324     var a = [];
 325     var l = this.length;
 326     for(var i=0; i<l; i++) {
 327       for(var j=i+1; j<l; j++) {
 328         // If this[i] is fo3und later in the array
 329         if (this[i] === this[j])
 330           j = ++i;
 331       }
 332       a.push(this[i]);
 333     }
 334     return a;
 335   };
 336