js/solGS/solGS.js

   1 /**
   2 * @class solgs
   3 * general solGS app wide and misc functions
   4 * @author Isaak Y Tecle <iyt2@cornell.edu>
   5 *
   6 */
   7
   8
   9 JSAN.use('jquery.blockUI');
  10 JSAN.use('jquery.form');
  11
  12
  13 var solGS = solGS || function solGS () {};
  14
  15 solGS.waitPage = function (page, args) {
  16
  17     var matchItems = 'solgs/population/'
  18         + '|solgs/populations/combined/'
  19         + '|solgs/trait/'
  20         + '|solgs/model/combined/trials/'
  21         + '|solgs/search/trials/trait/'
  22         + '|solgs/model/\\d+/prediction/'
  23         + '|solgs/analyze/traits/';
  24
  25     if (page.match(matchItems)) {
  26         askUser(page, args);
  27     }
  28     else {
  29         blockPage(page);
  30     }
  31
  32
  33     function  askUser(page, args) {
  34
  35         var t = '<p>This analysis may take longer than 20 min. '
  36             + 'Would you like to be emailed when it is done?</p>';
  37
  38         jQuery('<div />')
  39             .html(t)
  40             .dialog({
  41                 height : 200,
  42                 width  : 400,
  43                 modal  : true,
  44                 title  : "Analysis job submission",
  45                 buttons: {
  46                     Yes: {
  47                         text: 'Yes',
  48                         class: 'btn btn-success',
  49                         click: function() {
  50                             jQuery(this).dialog("close");
  51
  52                             checkUserLogin(page, args);
  53                         },
  54                     },
  55
  56                     No: {
  57                         text: 'No, I will wait...',
  58                         class: 'btn btn-primary',
  59                         click: function() {
  60                             jQuery(this).dialog("close");
  61
  62                             displayAnalysisNow(page, args);
  63                         },
  64                     },
  65
  66                     Cancel: {
  67                         text: 'Cancel',
  68                         class: 'btn btn-info',
  69                         click: function() {
  70                             jQuery(this).dialog("close");
  71                         },
  72                     },
  73                 }
  74             });
  75
  76     }
  77
  78
  79     function checkUserLogin (page, args) {
  80
  81         if (args === undefined) {
  82             args = {};
  83         }
  84
  85         jQuery.ajax({
  86             type    : 'POST',
  87             dataType: 'json',
  88             url     : '/solgs/check/user/login/',
  89             success : function(response) {
  90                 if (response.loggedin) {
  91                     var contact = response.contact;
  92
  93                     args['user_name']  = contact.name;
  94                     args['user_email'] = contact.email;
  95
  96                     getProfileDialog(page, args);
  97
  98                 } else {
  99                     loginAlert();
 100                 }
 101             }
 102         });
 103
 104     }
 105
 106
 107     function loginAlert () {
 108
 109         jQuery('<div />')
 110             .html('To use this feature, you need to log in and start over the process.')
 111             .dialog({
 112                 height : 200,
 113                 width  : 250,
 114                 modal  : true,
 115                 title  : 'Login',
 116                 buttons: {
 117                     OK: {
 118                         click: function () {
 119                             jQuery(this).dialog('close');
 120                             loginUser();
 121                         },
 122                         class: 'btn btn-success',
 123                         text : 'OK',
 124                     },
 125
 126                     Cancel: {
 127                         click: function () {
 128                             jQuery(this).dialog('close');
 129                         },
 130                         class: 'btn btn-primary',
 131                         text : 'Cancel'
 132                     }
 133                 }
 134             });
 135
 136     }
 137
 138
 139     function loginUser () {
 140
 141         window.location = '/solpeople/login.pl?goto_url=' + window.location.pathname;
 142
 143     }
 144
 145
 146     function displayAnalysisNow (page, args) {
 147
 148         blockPage(page, args);
 149
 150     }
 151
 152
 153     function blockPage (page, args) {
 154
 155         goToPage(page, args);
 156
 157         jQuery.blockUI.defaults.applyPlatformOpacityRules = false;
 158         jQuery.blockUI({message: 'Please wait..'});
 159
 160         jQuery(window).unload(function()  {
 161             jQuery.unblockUI();
 162         });
 163
 164     }
 165
 166
 167     function goToPage (page, args) {
 168
 169         var matchItems = 'solgs/population/'
 170             + '|solgs/confirm/request'
 171             + '|solgs/trait/'
 172             + '|solgs/model/combined/trials/'
 173             + '|solgs/model/\\d+/prediction/';
 174
 175         var multiTraitsUrls = 'solgs/analyze/traits/population/'
 176             + '|solgs/models/combined/trials/';
 177
 178         if (page.match(matchItems)) {
 179
 180             window.location = page;
 181
 182         } else if (page.match(multiTraitsUrls)) {
 183
 184             submitTraitSelections(page, args);
 185
 186         }  else if (page.match(/solgs\/populations\/combined\//)) {
 187             retrievePopsData();
 188             //window.location = page;
 189         }  else {
 190
 191             window.location = window.location.href;
 192         }
 193
 194     }
 195
 196
 197     function submitTraitSelections (page, args) {
 198
 199         wrapTraitsForm();
 200
 201         if (args == 'undefined') {
 202             document.getElementById('traits_selection_form').submit();
 203             document.getElementById('traits_selection_form').reset();
 204         } else {
 205             jQuery('#traits_selection_form').ajaxSubmit();
 206             jQuery('#traits_selection_form').resetForm();
 207         }
 208     }
 209
 210
 211     function wrapTraitsForm () {
 212
 213         var popId  = jQuery('#population_id').val();
 214         var formId = ' id="traits_selection_form"';
 215
 216         var action;
 217         var referer = window.location.href;
 218
 219         if ( referer.match(/solgs\/populations\/combined\//) ) {
 220             action = ' action="/solgs/models/combined/trials/' + popId + '"';
 221         }
 222
 223         if ( referer.match(/solgs\/population\//) ) {
 224             action = ' action="/solgs/analyze/traits/population/' + popId + '"';
 225         }
 226
 227         var method = ' method="POST"';
 228
 229         var traitsForm = '<form'
 230             + formId
 231             + action
 232             + method
 233             + '>'
 234             + '</form>';
 235
 236         jQuery('#population_traits_list').wrap(traitsForm);
 237
 238     }
 239
 240
 241     function getProfileDialog (page, args) {
 242
 243         var matchItems = '/solgs/population/'
 244             + '|solgs/trait/'
 245             + '|solgs/model/combined/trials/'
 246             + '|solgs/model/\\d+/prediction/';
 247
 248         if (page.match(matchItems) ) {
 249
 250             args = getArgsFromUrl(page, args);
 251         }
 252
 253         var form = getProfileForm(args);
 254
 255         jQuery('<div />', {id: 'email-form'})
 256             .html(form)
 257             .dialog({
 258                 height : 350,
 259                 width  : 400,
 260                 modal  : true,
 261                 title  : 'Info about your analysis.',
 262                 buttons: {
 263                     Submit: {
 264                         click: function() {
 265
 266                             var userName  = jQuery("#user_name").val();
 267                             var userEmail = jQuery("#user_email").val();
 268
 269                             var analysisName = jQuery('#analysis_name').val();
 270                             var analysisType = args.analysis_type;
 271
 272                             var dataSetType = args.data_set_type;
 273
 274                             args['user_email'] = userEmail;
 275                             args = JSON.stringify(args);
 276
 277                             var analysisProfile = {
 278                                 'user_name'    : userName,
 279                                 'user_email'   : userEmail,
 280                                 'analysis_name': analysisName,
 281                                 'analysis_page': page,
 282                                 'analysis_type': analysisType,
 283                                 'data_set_type': dataSetType,
 284                                 'arguments'    : args,
 285                             };
 286
 287                             jQuery(this).dialog('close');
 288
 289                             saveAnalysisProfile(analysisProfile);
 290                         },
 291                         class: 'btn btn-success',
 292                         text: 'Submit'
 293                     },
 294
 295                     Cancel:  {
 296                         click: function() {
 297                             jQuery(this).dialog('close');
 298                         },
 299                         class: 'btn btn-primary',
 300                         text: 'Cancel',
 301                     }
 302                 }
 303             });
 304
 305     }
 306
 307
 308     function getArgsFromUrl (url, args) {
 309
 310         if (window.Prototype) {
 311             delete Array.prototype.toJSON;
 312         }
 313
 314         if (url.match(/solgs\/trait\//)) {
 315
 316             var urlStr = url.split(/\/+/);
 317
 318             if (args === undefined) {
 319
 320                 args = {'trait_id'      : [ urlStr[4] ],
 321                         'population_id' : [ urlStr[6] ],
 322                         'analysis_type' : 'single model',
 323                         'data_set_type' : 'single population',
 324                        };
 325             }
 326             else {
 327
 328                 args['trait_id']      = [ urlStr[4] ];
 329                 args['population_id'] = [ urlStr[6] ];
 330                 args['analysis_type'] = 'single model';
 331                 args['data_set_type'] = 'single population';
 332
 333             }
 334         } else if (url.match(/solgs\/model\/combined\/trials\//)) {
 335
 336             var urlStr = url.split(/\/+/);
 337
 338             var traitId      = [];
 339             var populationId = [];
 340             var comboPopsId  = [];
 341
 342             var referer      = window.location.href;
 343
 344             if (referer.match(/solgs\/search\/trials\/trait\//)) {
 345
 346                 populationId.push(urlStr[5]);
 347                 comboPopsId.push(urlStr[5]);
 348                 traitId.push(urlStr[7]);
 349             }
 350             else if (referer.match(/solgs\/populations\/combined\//)) {
 351
 352                 populationId.push(urlStr[6]);
 353                 comboPopsId.push(urlStr[6]);
 354                 traitId.push(urlStr[8]);
 355             }
 356
 357             if (args === undefined) {
 358
 359                 args = {'trait_id'      : traitId,
 360                         'population_id' : populationId,
 361                         'combo_pops_id' : comboPopsId,
 362                         'analysis_type' : 'single model',
 363                         'data_set_type' : 'combined populations'};
 364             } else {
 365
 366                 args['trait_id']      = traitId;
 367                 args['population_id'] = populationId;
 368                 args['combo_pops_id'] = comboPopsId;
 369                 args['analysis_type'] = 'single model';
 370                 args['data_set_type'] = 'combined populations';
 371             }
 372         } else if (url.match(/solgs\/population\//)) {
 373
 374             var urlStr = url.split(/\/+/);
 375
 376             if (args === undefined) {
 377                 args = {
 378                     'population_id' : [ urlStr[4] ],
 379                     'analysis_type' : 'population download',
 380                     'data_set_type' : 'single population'
 381                 };
 382             } else {
 383                 args['population_id'] = [ urlStr[4] ];
 384                 args['analysis_type'] = 'population download';
 385                 args['data_set_type'] = 'single population';
 386             }
 387         } else if (url.match(/solgs\/model\/\d+\/prediction\//)) {
 388
 389             var traitId = jQuery('#trait_id').val();
 390             var modelId = jQuery('#model_id').val();
 391             var urlStr = url.split(/\/+/);
 392
 393             var dataSetType;
 394
 395             if (window.location.href.match(/solgs\/model\/combined\/populations\//)) {
 396                 dataSetType = 'combined populations';
 397             } else if (window.location.href.match(/solgs\/trait\/|solgs\/traits\/all\/population\//)) {
 398                 dataSetType = 'single population';
 399             }
 400
 401             if (args === undefined) {
 402
 403                 args = {
 404                     'trait_id'         : [ traitId ],
 405                     'training_pop_id'  : [ urlStr[4] ],
 406                     'selection_pop_id' : [ urlStr[6] ],
 407                     'analysis_type'    : 'selection prediction',
 408                     'data_set_type'    : dataSetType,
 409                 };
 410             }
 411             else {
 412                 args['trait_id']         = [ traitId ];
 413                 args['training_pop_id']  = [ urlStr[4] ];
 414                 args['selection_pop_id'] = [ urlStr[6] ];
 415                 args['analysis_type']    = 'selection prediction';
 416                 args['data_set_type']    = dataSetType;
 417             }
 418         }
 419
 420         return args;
 421
 422     }
 423
 424
 425     function getProfileForm (args) {
 426
 427         var email = '';
 428         if (args.user_email) {
 429             email = args.user_email;
 430         }
 431
 432         var userName = '';
 433         if (args.user_name) {
 434             userName = args.user_name;
 435         }
 436
 437         var emailForm = '<p>Please fill in your:</p>'
 438             + '<div class="form-group">'
 439             + '<table class="table">'
 440             + '<tr>'
 441             + '<td>Name:</td>'
 442             + '<td><input type="text" class="form-control" name="user_name" id="user_name" value=\"' + userName + '\"/></td>'
 443             + '</tr>'
 444             + '<tr>'
 445             + '<td>Analysis name:</td>'
 446             + '<td><input  type="text"  class="form-control" name="analysis_name" id="analysis_name"></td>'
 447             + '</tr>'
 448             + '<tr>'
 449             + '<td>Email:</td>'
 450             + '<td><input type="text" class="form-control" name="user_email" id="user_email" value=\"' + email + '\"/></td>'
 451             + '</tr>'
 452             + '</table>'
 453             + '<div>';
 454
 455         return emailForm;
 456
 457     }
 458
 459
 460     function saveAnalysisProfile (profile) {
 461
 462         jQuery.ajax({
 463             type    : 'POST',
 464             dataType: 'json',
 465             data    : profile,
 466             url     : '/solgs/save/analysis/profile/',
 467             success : function(response) {
 468                 if (response.result) {
 469                     runAnalysis(profile);
 470                     confirmRequest();
 471
 472                 } else {
 473                     jQuery('<div />', {id: 'error-message'})
 474                         .html('Failed saving your analysis profile.')
 475                         .dialog({
 476                             height : 200,
 477                             width  : 250,
 478                             modal  : true,
 479                             title  : 'Error message',
 480                             buttons: {
 481                                 OK: function () {
 482                                     jQuery(this).dialog('close');
 483                                     window.location = window.location.href;
 484                                 }
 485                             }
 486                         });
 487                 }
 488             },
 489             error: function () {
 490                 jQuery('<div />')
 491                     .html('Error occured calling the function to save your analysis profile.')
 492                     .dialog({
 493                         height : 200,
 494                         width  : 250,
 495                         modal  : true,
 496                         title  : 'Error message',
 497                         buttons: {
 498                             OK: function () {
 499                                 jQuery(this).dialog('close');
 500                                 window.location = window.location.href;
 501                             }
 502                         }
 503                     });
 504             }
 505         });
 506
 507     }
 508
 509
 510     function runAnalysis (profile) {
 511
 512         jQuery.ajax({
 513             dataType: 'json',
 514             type    : 'POST',
 515             data    : profile,
 516             url     : '/solgs/run/saved/analysis/',
 517         });
 518
 519     }
 520
 521
 522     function confirmRequest () {
 523
 524         blockPage('/solgs/confirm/request');
 525
 526     }
 527
 528 }
 529
 530
 531 jQuery(document).ready(function (){
 532
 533      jQuery('#runGS').on('click',  function() {
 534
 535          var page;
 536          var analysisType;
 537          var dataSetType;
 538
 539          var hostName = window.location.protocol
 540              + '//'
 541              + window.location.host;
 542
 543          var referer = window.location.href;
 544
 545          if ( referer.match(/solgs\/populations\/combined\//) ) {
 546
 547              dataSetType = 'combined populations';
 548          }
 549
 550          if ( referer.match(/solgs\/population\//) ) {
 551
 552              dataSetType = 'single population';
 553          }
 554
 555          var traitIds = jQuery("#traits_selection_div :checkbox").fieldValue();
 556          var popId = jQuery('#population_id').val();
 557
 558          if (traitIds.length == 1 ) {
 559
 560              analysisType = 'single model';
 561
 562              if ( referer.match(/solgs\/populations\/combined\//) ) {
 563
 564                  page = hostName
 565                      + '/solgs/model/combined/trials/'
 566                      + popId
 567                      + '/trait/'
 568                      + traitIds[0];
 569
 570              } else if ( referer.match(/solgs\/population\//)) {
 571
 572                  page = hostName
 573                      + '/solgs/trait/'
 574                      + traitIds[0]
 575                      + '/population/'
 576                      + popId;
 577              }
 578
 579          } else {
 580
 581               analysisType = 'multiple models';
 582
 583              if ( referer.match(/solgs\/populations\/combined\//) ) {
 584                  page = hostName
 585                      + '/solgs/models/combined/trials/'
 586                      + popId;
 587
 588              } else {
 589
 590                  page = hostName
 591                      + '/solgs/analyze/traits/population/'
 592                      + popId;
 593              }
 594          }
 595
 596          var args = {'trait_id'      : traitIds,
 597                      'population_id' : [ popId ],
 598                      'analysis_type' : analysisType,
 599                      'data_set_type' : dataSetType,
 600                     };
 601
 602          solGS.waitPage(page, args);
 603
 604      });
 605
 606 });
 607
 608
 609 solGS.getTraitDetails = function (traitId) {
 610
 611     if (!traitId) {
 612         traitId = jQuery("#trait_id").val();
 613     }
 614
 615     if (traitId) {
 616         jQuery.ajax({
 617             dataType: 'json',
 618             type    : 'POST',
 619             data    : {'trait_id': traitId},
 620             url     : '/solgs/details/trait/' + traitId,
 621             success: function (trait) {
 622                 jQuery(document.body)
 623                     .append('<input type="hidden" id="trait_name" value="'
 624                             + trait.name + '"></input>');
 625                 jQuery(document.body)
 626                     .append('<input type="hidden" id="trait_abbr" value="'
 627                             + trait.abbr + '"></input>');
 628             },
 629         });
 630     }
 631
 632 }
 633
 634
 635 solGS.getPopulationDetails = function () {
 636
 637     var populationId   = jQuery("#population_id").val();
 638     var populationName = jQuery("#population_name").val();
 639
 640     var selectionPopId   = jQuery("#selection_pop_id").val();
 641     var selectionPopName = jQuery("#selection_pop_name").val();
 642
 643     if (populationId == 'undefined') {
 644         populationId   = jQuery("#model_id").val();
 645         populationName = jQuery("#model_name").val();
 646     }
 647
 648     if (!populationId) {
 649         populationId = jQuery("#combo_pops_id").val();
 650     }
 651
 652     return {'population_id'     : populationId,
 653             'training_pop_id'   : populationId,
 654             'population_name'   : populationName,
 655             'training_pop_name' : populationName,
 656             'selection_pop_id'  : selectionPopId,
 657             'selection_pop_name': selectionPopName,
 658            };
 659 }
 660
 661 //executes two functions alternately
 662 jQuery.fn.alternateFunctions = function(a, b) {
 663     return this.each(function() {
 664         var clicked = false;
 665         jQuery(this).bind("click", function() {
 666             if (clicked) {
 667                 clicked = false;
 668                 return b.apply(this, arguments);
 669
 670             }
 671             clicked = true;
 672              return a.apply(this, arguments);
 673
 674         });
 675     });
 676 };
 677