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Fix Content-disposition test for SGN::Controller::Download
2011-05-03
Jona
t
han "
D
uke"
.
.
.
Fix
Content-dispositio
n
test for
SGN::Control
l
er::Download
commit
|
commitdiff
|
tree
2011-05-03
Jona
t
ha
n
"
Duke"
.
.
.
fi
x
typo in s
g
n
.
conf
commit
|
commitdiff
|
tree
2011-05-03
Jon
a
t
han "Duke"
.
.
.
Groom formattinghelpe
r
s
.
t a bit
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "Du
k
e"
.
.
.
Prevent some u
n
initia
l
ized va
l
ue warnin
g
s
commit
|
commitdiff
|
tree
2011-04-26
Jonathan
"
Duk
e
"
.
.
.
Make t/01app
.
t use Test:
:
Most (tri
g
ger jitterbug)
commit
|
commitdiff
|
tree
2011-04-26
Jonathan
"Duk
e
"
.
.
.
Tidy up a
s
c
ri
p
t to tem
p
t the Jitte
r
bug
go
d
s
commit
|
commitdiff
|
tree
2011-04-26
Jon
a
than "Duke"
.
.
.
Yet anot
h
er
t
rivial c
h
ange to tri
g
ger Jit
t
erbug
commit
|
commitdiff
|
tree
2011-04-26
Jo
n
a
than
"
D
uke"
.
.
.
Ignore a file which is gene
r
ate
d
by n
e
we
r
Module::Build
'
s
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duke
"
.
.
.
Trivi
a
l chan
g
e
t
o
B
uild
.
PL to
t
r
i
gg
e
r jitte
r
bu
g
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duke"
.
.
.
Me
r
ge bra
n
ch
'master' into topic/secretom
commit
|
commitdiff
|
tree
2011-04-22
Jon
a
than "Duke"
.
.
.
R
emove the min
i
fied color
b
o
x
and re
s
et colorbox
.
js
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Jo
n
athan "Duke"
.
.
.
Pr
o
perly squ
a
sh rede
f
inition
w
arnings
commit
|
commitdiff
|
tree
2011-04-21
Jo
n
athan "Duke"
.
.
.
Warning
squash in i
n
fo_section
.
ma
s
commit
|
commitdiff
|
tree
2011-04-15
Jona
t
han
"
Duke"
.
.
.
Merge branch 'topic/tmpredpl'
commit
|
commitdiff
|
tree
2011-03-24
Jona
t
h
a
n "
D
uke"
.
.
.
Merge remo
t
e-tra
c
k
i
ng branch '
o
ri
g
i
n/topic/stoc
k
_
s
earch
'
commit
|
commitdiff
|
tree
2011-03-24
Jonathan
"Duke"
.
.
.
Merge rem
o
te-tracking branc
h
'origin/topic/stock_search
.
.
.
commit
|
commitdiff
|
tree
2011-03-24
Jonathan "Duke"
.
.
.
Use u
n
min
i
fi
e
d the jquery, beca
u
se it wil
l
b
e min
i
fied
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jon
a
t
han "Du
k
e"
.
.
.
Remove a useless us
e
of catfile
,
rbuels++
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
Make stock search work properly f
r
o
m
dire
c
t_searc
h
.
p
l
commit
|
commitdiff
|
tree
2011-03-23
Jona
t
han
"
Duke"
.
.
.
M
er
g
e remote-tra
c
king branch 'origin/topic/sto
c
k
_
search
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jo
n
athan "Duk
e
"
.
.
.
St
o
re the stock s
e
arch form in an external
YAML file
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
cont
a
i
ner
_
attrib
u
tes
is no
t
a
v
a
lid
FormFu
a
ttribute
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
Me
r
ge rem
o
te-tracking branc
h
'o
r
igin/
t
opic/stock_search
.
.
.
commit
|
commitdiff
|
tree
2011-03-22
Jonathan "Duke"
.
.
.
wi
p
commit
|
commitdiff
|
tree
2011-03-17
Jo
n
a
than "
D
u
ke"
.
.
.
A
d
d a stub for updating the trait
r
a
n
ge when
t
he tra
i
t
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
J
o
nathan
"Duke
"
.
.
.
Add a div that
ca
n
be populated
w
ith the valid trai
t
.
.
.
commit
|
commitdiff
|
tree
2011-03-16
Jonat
h
an "Duke"
.
.
.
Fix stock search pagin
a
t
ion lin
k
s and re
f
actor
c
o
ntroller
commit
|
commitdiff
|
tree
2011-03-16
Jonath
a
n "Duke"
.
.
.
Refactor sto
c
k
c
ontrol
l
e
r
.
No functional changes
commit
|
commitdiff
|
tree
2011-03-15
Jona
t
han "Duke"
.
.
.
Show the
a
d
v
an
c
ed
o
p
tions
i
n stock search results if
.
.
.
commit
|
commitdiff
|
tree
2011-03-14
Jon
a
than "
D
uke"
.
.
.
U
pd
a
te the 'A
b
o
u
t SGN' bl
u
rb to be m
o
r
e
inc
l
usive to
.
.
.
commit
|
commitdiff
|
tree
2011-03-15
Jo
n
athan "Duke"
.
.
.
F
i
x synt
a
x e
r
ror i
n
or
g
anism
controller
test
commit
|
commitdiff
|
tree
2011-03-11
Jon
a
than "Duk
e
"
.
.
.
Ma
k
e the adva
n
ced checkbox o
n
s
tock search finally
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Jonatha
n
"Duk
e
"
.
.
.
U
s
e th
e
bare
l
y-documented co
n
tain
e
r
_
attri
b
utes in FormFu
commit
|
commitdiff
|
tree
2011-03-10
Jonathan "Du
k
e"
.
.
.
Te
l
l Form
F
u to
a
dd CSS cla
s
ses
t
o cert
a
i
n
ad
v
anced
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Jonat
h
an "D
u
k
e"
.
.
.
pe
r
lti
d
y
o
n assing_owner
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Jo
n
athan "Duke"
.
.
.
Clean
u
p cr
u
ft in assi
g
n_owner
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jo
n
a
t
ha
n
"Duke"
.
.
.
M
o
dern
i
ze and uncruftify
th
e
cvie
w
index
.
mas a b
i
t
commit
|
commitdiff
|
tree
2011-02-04
Jonath
a
n "Duke
"
.
.
.
Ad
d
some
klingon
s
ensibility to Secreto
m
code and clean
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke
"
.
.
.
R
emove cruft from cv
i
ew i
n
de
x
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"Duk
e
"
.
.
.
Refactor Organism controller tes
t
s a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Properly ski
p
ITAG
r
elease tests when required data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "D
u
ke"
.
.
.
Add
t
/
d
ata to
.
gitignore
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"Duke"
.
.
.
Properly
w
arn the exit
code if something fails i
n
S
G
N
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jonathan "Duke"
.
.
.
Perltidy
o
n
t/phen
o
me/qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Convert bul
k
tests to use
SGN::Test::WWW::Mechanize
commit
|
commitdiff
|
tree
2011-02-01
J
o
na
t
h
an
"
Duke"
.
.
.
M
ake SGN::Build report better e
r
r
or
s
when che
c
king
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "
D
uke"
.
.
.
Move SGN::Vi
e
w
:
:Email::ErrorEmail tests to a
nic
e
r
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Skip some QTL test
s
if the heatma
p
i
s
n
ot pr
e
sent,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
J
onathan "Du
k
e"
.
.
.
M
ake SGN::View::
S
tock ge
n
erate cvte
r
m links from cvter
m
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
onathan "Duke"
.
.
.
Skip
some tests if member_se
a
r
ch_form is not ava
i
labl
e
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Add some diagno
s
itcs and a test for SGN::Controller
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jona
t
h
a
n "Du
k
e"
.
.
.
Skip
s
ome ge
n
omic cl
o
ne tests
if the re
l
evant form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Giv
e
B
i
o
::S
e
c
reT
a
ry::
T
Mpred modern klingon-like pow
e
rs
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Per
l
ti
d
y on
B
io
:
:SecreTary::TMpred
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Cache th
e
d
b
when lo
o
king u
p
f
e
atur
e
_cvterms and prevent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonathan
"
Duke"
.
.
.
u
p
date
.
gitig
n
ore
commit
|
commitdiff
|
tree
2011-01-28
Jonath
a
n "Duk
e
"
.
.
.
Move SGN::View::Email tests
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Pretti
f
y SGN::Contr
o
ller::Stock
commit
|
commitdiff
|
tree
2011-01-28
Jonathan
"
D
uke"
.
.
.
M
a
k
e som
e
triv
i
al
c
hanges
to trigg
e
r jitterbu
g
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duke"
.
.
.
Merge branch 'topic/c
o
ntact'
commit
|
commitdiff
|
tree
2011-01-26
Jonathan
"Duke"
.
.
.
Ge
t
u
ser e
m
ail c
o
rrec
t
l
y
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "D
u
ke
"
.
.
.
Modernize the Contact Contr
o
ller
commit
|
commitdiff
|
tree
2011-01-26
J
o
n
a
than "Duke
"
.
.
.
P
erlt
i
dy
on lo
c
us_display
.
pl
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "D
u
k
e"
.
.
.
Refactor some SGN::
A
uthentication::* co
d
e
commit
|
commitdiff
|
tree
2011-01-24
J
o
nathan "D
u
ke"
.
.
.
Use SGN
:
:View
:
:
Email instea
d
of the
de
p
recated
C
XG
N
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "D
u
ke"
.
.
.
R
e
move /tools/contact
.
pl and a
l
l references to it
,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
Modernize
c
osi
i
_
s
ubmi
s
s
i
on
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
perltidy on t/
i
ntegratio
n
/cont
a
ct
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "Duk
e
"
.
.
.
Perl
t
i
d
y t/cview/map
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jon
a
than "Duk
e
"
.
.
.
Fix SGN::
B
uild::Ch
a
nge
l
og tests
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "Duke"
.
.
.
Fix
s
eque
n
ce
A
PI tests
commit
|
commitdiff
|
tree
2011-01-13
Jonat
h
a
n "Duke"
.
.
.
Fix
e
rror count and remove
som
e
commented-o
u
t
code
commit
|
commitdiff
|
tree
2010-12-09
J
o
nathan "Duke"
.
.
.
Ignore some temp da
t
a
f
i
l
e
s
commit
|
commitdiff
|
tree
2010-12-07
Jonat
h
an "Duk
e
"
.
.
.
Add a trait_list
.
pl valid
a
tion
t
est
commit
|
commitdiff
|
tree
2010-12-07
Jonathan "Duke"
.
.
.
Add some more
QTL se
a
r
c
h
val
i
d
ation tests
commit
|
commitdiff
|
tree
2010-12-07
Jonath
a
n "Duke"
.
.
.
Create a
new t
e
st file for
searc
h
validation tests
.
.
.
commit
|
commitdiff
|
tree
2010-12-01
J
o
na
t
h
a
n
"Duke"
.
.
.
Add basic test for /to
o
ls/wait
.
pl
commit
|
commitdiff
|
tree
2010-12-01
Jonath
a
n "Duke"
.
.
.
B
ring /tools/
w
ait
.
pl
i
n
to the modern
a
ge
commit
|
commitdiff
|
tree
2010-12-01
Jonathan "Duke"
.
.
.
Add a test for organism_link
commit
|
commitdiff
|
tree
2010-12-01
Jonathan
"
Du
k
e"
.
.
.
Add a
test for c
v
t
erm_link
commit
|
commitdiff
|
tree
2010-12-01
Jona
t
han "Duke"
.
.
.
Make feature links use id's, sin
c
e names a
r
en't un
i
que
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "D
u
ke"
.
.
.
P
r
e
f
etch some
cvterms in th
e
exon re
s
ult set
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
P
a
ss along
f
e
a
tur
e
locs
i
n
general feat
u
re pages too
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "
D
uke"
.
.
.
Use a once b
l
ock in r
e
lated
f
eatures compo
n
e
nt
commit
|
commitdiff
|
tree
2010-11-30
Jonath
a
n "Duke"
.
.
.
Proper
l
y
i
te
r
ate over feat
u
r
elocs when
looking up site
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
J
ona
t
han
"
Duke"
.
.
.
Cache featurelocs
i
n the
C
a
t
a
lyst st
a
sh
commit
|
commitdiff
|
tree
2010-11-30
Jona
t
han "
D
uke"
.
.
.
Pref
e
tch cvter
m
s
w
hen requesting gene
s
.
Gene pages
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Prefetch some fea
t
ureloc
_
features
commit
|
commitdiff
|
tree
2010-11-30
Jon
a
th
a
n "Duke"
.
.
.
Make
gene
.
mas
m
ore rea
d
a
ble and remove cruf
t
commit
|
commitdiff
|
tree
2010-11-30
Jonath
a
n
"
D
u
ke
"
.
.
.
Give a more useful error
message when
t
he R ver
s
io
n
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Cache featureloc
s
i
n
a few more places
commit
|
commitdiff
|
tree
2010-11-30
J
on
a
than
"Duke"
.
.
.
Put
module u
s
e in
a on
c
e block on the gene page
commit
|
commitdiff
|
tree
2010-11-30
J
o
natha
n
"Duk
e
"
.
.
.
S
t
art caching featureloc
s
so we
d
on't recalculat
e
them
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "
D
uke"
.
.
.
Mak
e
gene
.
m
a
s more re
a
dable and remove
c
ruft
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Give a m
o
re useful error
m
e
s
sag
e
when the R
v
e
rsion
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
J
o
nathan "Duke"
.
.
.
Get rid
o
f
warning in
B
uil
d
.
PL when R is not
installed
commit
|
commitdiff
|
tree
2010-11-24
Jonathan
"D
u
ke"
.
.
.
Update Phe
n
ome va
l
idation t
e
s
t
s
i
nce p_marker ch
a
nged
.
.
.
commit
|
commitdiff
|
tree
2010-11-24
J
onathan "Duke"
.
.
.
Imp
r
ove
t
he Add
U
s
erRoles dbp
a
tch sli
g
htly
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2010-11-24
Jonathan "Duke"
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.
.
M
ov
e
the A
d
dUserRoles
d
bpatch
t
o
the
c
orrec
t
directory
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2010-11-23
Jonatha
n
"Duke
"
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Fix bootstrappi
n
g prob
l
em w
i
t
h
Parse
:
:De
b
::Control
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