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2020-01-22	Lukas Mueller	update fixture with latest patches.	commit \| commitdiff \| tree
2019-12-09	Lukas Mueller	never delete cvterms that have associated phenotypes.	commit \| commitdiff \| tree
2019-12-07	Lukas Mueller	tweaks.	commit \| commitdiff \| tree
2019-12-07	Lukas Mueller	add a cvterm deletion script.	commit \| commitdiff \| tree
2019-11-01	Lukas Mueller	adapt BLAST for remote slurm.	commit \| commitdiff \| tree
2019-10-30	Lukas Mueller	add missing dependency CXGN::Cvterm.	commit \| commitdiff \| tree
2019-10-30	Lukas Mueller	remove forgotten conflict marker.	commit \| commitdiff \| tree
2019-10-30	Lukas Mueller	Merge branch 'master' into topic/breedbase_default	commit \| commitdiff \| tree
2019-10-30	Lukas Mueller	resolve conflict in CXGN::Trial.	commit \| commitdiff \| tree
2019-10-15	Lukas Mueller	remove unwanted edit backup file.	commit \| commitdiff \| tree
2019-10-13	Lukas Mueller	fix test for sequencing info.	commit \| commitdiff \| tree
2019-10-13	Lukas Mueller	fix issue with rank field; fix issue with website and...	commit \| commitdiff \| tree
2019-10-09	Lukas Mueller	Merge branch 'master' into topic/blast_fix	commit \| commitdiff \| tree
2019-10-09	Lukas Mueller	tweak blastn parameters to make it work.	commit \| commitdiff \| tree
2019-10-09	Lukas Mueller	use new blast binaries.	commit \| commitdiff \| tree
2019-10-09	Lukas Mueller	provide a schema object for static pages as some may...	commit \| commitdiff \| tree
2019-09-11	Lukas Mueller	add retrieved data from old system to sequencing info...	commit \| commitdiff \| tree
2019-09-11	Lukas Mueller	add db patch for sequenced accessions.	commit \| commitdiff \| tree
2019-09-11	Lukas Mueller	add index files for blast test file.	commit \| commitdiff \| tree
2019-09-10	Lukas Mueller	remove alerts.	commit \| commitdiff \| tree
2019-09-10	Lukas Mueller	fix query length extraction.	commit \| commitdiff \| tree
2019-09-10	Lukas Mueller	make blast utils work with blastdbcmd, not fastacmd...	commit \| commitdiff \| tree
2019-09-09	Lukas Mueller	print which accs are not in database.	commit \| commitdiff \| tree
2019-09-09	Lukas Mueller	add script to transfer genome info from organism to...	commit \| commitdiff \| tree
2019-09-09	Lukas Mueller	implement editing of an existing sequencing info record.	commit \| commitdiff \| tree
2019-09-08	Lukas Mueller	make deletion work.	commit \| commitdiff \| tree
2019-09-06	Lukas Mueller	add initial version of blast database object that is...	commit \| commitdiff \| tree
2019-09-05	Lukas Mueller	Merge branch 'master' into topic/sequenced_accessions2	commit \| commitdiff \| tree
2019-08-15	Lukas Mueller	tweak sequenced accessions.	commit \| commitdiff \| tree
2019-08-05	Lukas Mueller	removing duplicate file (is in mason/genomes/)	commit \| commitdiff \| tree
2019-08-05	Lukas Mueller	add files for sequenced accessions.	commit \| commitdiff \| tree
2019-08-05	Lukas Mueller	add test for sequencing info object.	commit \| commitdiff \| tree
2019-08-03	Lukas Mueller	fix conflict in Stock.pm	commit \| commitdiff \| tree
2019-08-03	Lukas Mueller	factor out a CXGN::Stock::SequencingInfo object.	commit \| commitdiff \| tree
2019-07-19	Lukas Mueller	fix typo in link to tobacco database.	commit \| commitdiff \| tree
2019-07-19	Lukas Mueller	add dynamic mason controller.	commit \| commitdiff \| tree
2019-07-19	Lukas Mueller	add solcyc dynamic mason page.	commit \| commitdiff \| tree
2019-07-19	Lukas Mueller	generate datatable.	commit \| commitdiff \| tree
2019-07-18	Lukas Mueller	add missing source entry sequenced_accessions.js.	commit \| commitdiff \| tree
2019-07-18	Lukas Mueller	make a clean branch for sequenced accessions.	commit \| commitdiff \| tree
2019-07-18	Lukas Mueller	tweak trial designs that still crash.	commit \| commitdiff \| tree
2019-07-16	Lukas Mueller	start interfacing the mixed model tools with the analysis...	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	change the name of the new location so that the old...	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	make swap_sample_wells.pl compile.	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	add a script to swap sample wells in genotyping plates.	commit \| commitdiff \| tree
2019-07-05	Lukas Mueller	tweak plugins so that they (mostly) work.	commit \| commitdiff \| tree
2019-07-05	Lukas Mueller	always use standard object notation when calling functions...	commit \| commitdiff \| tree
2019-07-04	Lukas Mueller	make all tests pass in CXGN/Trial.t.	commit \| commitdiff \| tree
2019-07-01	Lukas Mueller	make trial accessor accept different flavors of Trial...	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	make test work, partially complete.	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	move class functions from Project.pm class back to...	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	add owner as a projectprop.	commit \| commitdiff \| tree
2019-06-11	Lukas Mueller	add start of Analysis framework.	commit \| commitdiff \| tree
2019-05-25	Lukas Mueller	add a function that retrieves all trail metadata (file...	commit \| commitdiff \| tree
2019-05-25	Lukas Mueller	fix conflict in CXGN::Trial.	commit \| commitdiff \| tree
2019-05-22	Lukas Mueller	tweak analysis and mixed model objects.	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	add POD and fix bug that caused synonyms to be loaded...	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	fix issue with blast	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	working on storing analyses, work in progress.	commit \| commitdiff \| tree
2019-05-11	Lukas Mueller	add bti logo to breedbase footer.	commit \| commitdiff \| tree
2019-05-11	Lukas Mueller	Merge branch 'topic/modern_mixedmodels2' into topic...	commit \| commitdiff \| tree
2019-05-10	Lukas Mueller	add missing CXGN::Phenotype::File class.	commit \| commitdiff \| tree
2019-05-05	Lukas Mueller	further adapt mason files for breedbase.	commit \| commitdiff \| tree
2019-05-04	Lukas Mueller	start adapting default layout for breedbase.	commit \| commitdiff \| tree
2019-05-01	Lukas Mueller	tweaks.	commit \| commitdiff \| tree
2019-04-21	Lukas Mueller	refactor store vcf genotypes to separate metadata storage...	commit \| commitdiff \| tree
2019-04-20	Lukas Mueller	more objects for mixed models.	commit \| commitdiff \| tree
2019-04-18	Lukas Mueller	add mixed model tools to new branch (excessive conflicts...	commit \| commitdiff \| tree
2019-04-09	Lukas Mueller	implement genotype deletion using nd_protocol_id.	commit \| commitdiff \| tree
2019-04-08	Lukas Mueller	implement genotype deletion script. Should probably...	commit \| commitdiff \| tree
2019-04-05	Lukas Mueller	add genotype deletion script.	commit \| commitdiff \| tree
2019-04-04	Lukas Mueller	tweak protocol handling.	commit \| commitdiff \| tree
2019-03-22	Lukas Mueller	remove unnecessary code from parsing.	commit \| commitdiff \| tree
2019-03-22	Lukas Mueller	choose correct plugin in script.	commit \| commitdiff \| tree
2019-03-22	Lukas Mueller	an experimental script that loads transposed vcf files...	commit \| commitdiff \| tree
2019-03-20	Lukas Mueller	add a flexible controller for static pages.	commit \| commitdiff \| tree
2019-02-01	Lukas Mueller	add POD to CXGN::Genotype.	commit \| commitdiff \| tree
2019-02-01	Lukas Mueller	adding a function for checking the concordance of parental...	commit \| commitdiff \| tree
2019-01-27	Lukas Mueller	add to do in Stock.pm	commit \| commitdiff \| tree
2018-12-20	Lukas Mueller	fix issue with new location geojson format and metadata.	commit \| commitdiff \| tree
2018-12-11	Lukas Mueller	fix show and download links for matched BLAST sequence.	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	make parent object mutable; fix primary key in child.	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	adding a rudimentary unit_fixture test for the CXGN...	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	add a rudimentary test for the CXGN::Stock object.	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	adapt CXGN::Cross calls to new signature using schema...	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	add a objects() and subjects() accessor.	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	fix conflicts due to offpring of.	commit \| commitdiff \| tree
2018-12-07	Lukas Mueller	useless commit.	commit \| commitdiff \| tree
2018-12-05	Lukas Mueller	tweak cross object and controller.	commit \| commitdiff \| tree
2018-12-03	Lukas Mueller	tweak cross deletion functions and cross object.	commit \| commitdiff \| tree
2018-11-29	Lukas Mueller	Merge branch 'master' into topic/delete_cross	commit \| commitdiff \| tree
2018-11-28	Lukas Mueller	add a to do...	commit \| commitdiff \| tree
2018-11-26	Lukas Mueller	implement cross deletion.	commit \| commitdiff \| tree
2018-11-26	Lukas Mueller	implement cross deletion.	commit \| commitdiff \| tree
2018-11-25	Lukas Mueller	Merge branch 'master' into topic/delete_cross	commit \| commitdiff \| tree
2018-11-03	Lukas Mueller	fix conflict	commit \| commitdiff \| tree
2018-11-03	Lukas Mueller	blast test database reindexing.	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	use CXGN::Blast object instead of outdated CXGN::BlastDb...	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	read jbrowse_src from db	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	add jbrowse_src column to Blast object.	commit \| commitdiff \| tree
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