| 2010-10-05 |
Robert Buels | remove SGN::Config and stray uses of it
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | add an SGN_CONFIG env var to production apache conf...
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | Merge branch 'master' into topic/config
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | fix $c->tempfile syntax in blast tool
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | fix pass_env config in CGI controller
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | Merge branch 'master' into topic/config
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | couple of config syntax corrections
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | move most CGI controller config out of the text config...
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | remove support for global_mason_lib conf dir, will...
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commit | commitdiff | tree |
| 2010-10-05 |
Robert Buels | move Static::Simple configuration out of text conf...
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commit | commitdiff | tree |
| 2010-10-04 |
Robert Buels | add independent Config::JFDI-based conf file loading...
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commit | commitdiff | tree |
| 2010-10-04 |
Robert Buels | move conf variables that are not meant to be changed...
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commit | commitdiff | tree |
| 2010-10-04 |
Robert Buels | throw out most of the config loading code in SGN::Role...
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commit | commitdiff | tree |
| 2010-10-04 |
Robert Buels | organism controller should not try to make DB connections...
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commit | commitdiff | tree |
| 2010-10-02 |
Robert Buels | remove site config use of SGN::Config, move config...
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commit | commitdiff | tree |
| 2010-10-02 |
Robert Buels | make javascript controller accept single strings in...
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commit | commitdiff | tree |
| 2010-10-02 |
Robert Buels | make GBrowse2 feature accept single strings in perl_inc
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commit | commitdiff | tree |
| 2010-10-01 |
Robert Buels | bugfix to tempfiles() method, URI did not include suffix
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commit | commitdiff | tree |
| 2010-10-01 |
Robert Buels | do not need stacktrace config anymore
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commit | commitdiff | tree |
| 2010-10-01 |
Robert Buels | improved site Config loading, removing dependency on...
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commit | commitdiff | tree |
| 2010-10-01 |
Robert Buels | fixed SGN::Role::Site::Files tempfile method, added...
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | keep dep list alphabetized
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | no longer need CGI::Carp::DebugScreen
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | need dep on Data::Visitor::Callback also
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | bugfix handling of exception-based message pages
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | only send email notifications if on a production server
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | added subject line to error email view, refactored...
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | replace Catalyst::Plugin::ErrorCatcher with a call...
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | add Email and Email::ErrorEmail views
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | fixed exception throw for invalid marker page calling
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | tweak javascript controller debugging output
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commit | commitdiff | tree |
| 2010-09-30 |
Robert Buels | use mydevlibs in SGN::Test also
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | Revert "moving CXGN::Cview::Map::SGN::* from Cview...
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | Merge branch 'master' of github.com:solgenomics/sgn
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | whitespace and text-wrapping cleanup
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | make the Contig map throw a message (with notification...
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | moving CXGN::Cview::Map::SGN::* from Cview into sgn...
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | tweaked error page html styles
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commit | commitdiff | tree |
| 2010-09-28 |
Robert Buels | Merge branch 'topic/map_overview'
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commit | commitdiff | tree |
| 2010-09-27 |
Robert Buels | added Test::WWW::Mechanize::Catalyst 0.50 as a build dep
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commit | commitdiff | tree |
| 2010-09-27 |
Robert Buels | Merge branch 'master' into topic/map_overview
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commit | commitdiff | tree |
| 2010-09-27 |
Robert Buels | factored MyDevLibs handling into SGN::Devel::MyDevLibs...
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | one fewer DBICFactory use, slightly fewer connections...
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | fixed dbh leak on clone_info page
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | fix missing constants in another cosii mason component
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | cleaned up cosii rendering code, made it a columnar_table_html
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | tweak default columnar table alt freq
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commit | commitdiff | tree |
| 2010-09-25 |
Robert Buels | make marker overgo sequence rendering less fugly
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | add a couple more weak refs for good measure
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | fix leaking of SiteFeature objects
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | fixed a couple of tempfile creation issues in insilicopcr...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | add gbrowse link to unigene detail pages
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | factored columnar table of gbrowse xrefs into its own...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | tweak formatting of genomic links on marker pages
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | redid genomic links on marker pages to use the gbrowse...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | not necessary to include CXGN.Effects everywhere anymore
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | perltidy on marker location printing code
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | remove duplicated javascript view call in javascript...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | merged t/validate/cview* tests into one
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | Merge branch 'master' into topic/map_overview
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | clean irrelevant stuff from CGI scripts error backtraces
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | use SGN::Test::WWW::Mechanize for t/cview/map.t, gives...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | fixed t/SGN/View/Feature.t db profile skipping behavior
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | silence noisy diags from caps designer test
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | change back to foo and bar
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | Merge branch 'master' into topic/map_overview
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | marker page title should be in overall marker page...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | add biosource to example apache dev conf paths
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | tweak explanatory text on map overlay tool
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | foo and bar are very weird to regular users, change...
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commit | commitdiff | tree |
| 2010-09-24 |
Robert Buels | added overlay_ prefix to js functions on map.pl page
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | set messed-up SGN::View::Feature test as TODO
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | Merge remote branch 'origin/biosource'
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | thread necessary basepath and tempfiles_subdir vars...
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | fixed map.pl tempfiles subdir
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | clean up stderr print
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | debug output clarification
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | fixed MapOverviews class names forgotten by mueller
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commit | commitdiff | tree |
| 2010-09-23 |
Robert Buels | Merge remote branch 'origin/topic/map_items'
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commit | commitdiff | tree |
| 2010-09-22 |
Robert Buels | bugfix to insilicopcr tests, was not handling the wait...
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commit | commitdiff | tree |
| 2010-09-22 |
Robert Buels | fix case error in insilicopcr params
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commit | commitdiff | tree |
| 2010-09-22 |
Robert Buels | for better backcompat, make index.pl dispatch an external...
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commit | commitdiff | tree |
| 2010-09-22 |
Robert Buels | added MyDevLibs-using SGN::Script::Test to make bin...
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commit | commitdiff | tree |
| 2010-09-17 |
Robert Buels | JS packs need to be inserted in error handler also...
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commit | commitdiff | tree |
| 2010-09-17 |
Robert Buels | create family_images tempfiles subdir
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | a few cleanups to alignment viewer, fixed ID input...
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | added .pl files to default restart regex for sgn dev...
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | reordered code and expanded POD in organism controller...
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | align viewer warning squash
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | fixed display of marker attributions
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | tweak r_qtl temp path to be per-user
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | moving r_qtl temp path variable to SGN::Config
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | squash warning for unset js modtimes
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | add support for If-Modified-Since requests for JS packs...
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | nice typo duke
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | js packs really should be served with a relative url
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commit | commitdiff | tree |
| 2010-09-16 |
Robert Buels | corrected comment
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commit | commitdiff | tree |
| 2010-09-15 |
Robert Buels | POD tweak
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commit | commitdiff | tree |
| 2010-09-15 |
Robert Buels | a lot more POD for SGN::Test::WWW::Mechanize
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commit | commitdiff | tree |
| 2010-09-15 |
Robert Buels | added unigene direct_search.pl page to validate tests
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commit | commitdiff | tree |
