| 2011-04-20 |
Robert Buels | fix capitalization of more category headings
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | add track definitions for repeats and repeats_aggressive...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | tweak ITAG1 ref seq track title
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | tweak method of linking ITAG1 scaffolds and ITAG2.3...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | f
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | fix some track categories
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | make gbrowse site xref search fall back to get_feature_by_na...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | make assembly track use sitefeature xrefs for clicked...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | fix links to protein browsing
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | remove genemark, not in itag2.3. remove balloon hover...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | make sequence/highlighted test pass by mocking the...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | fix featureprop sorting by prop type name
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | group multiple featureprops of the same type in a <ul>
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | whitespace cleanup
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | enable a bunch more blast buttons on feature pages
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | remove residues-or-calculate logic from mrna and polypeptide...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | fixed up feature page mRNA and protein seq calculation...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | change mRNA sequence on gene page to be 'cDNA' sequence...
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | add the defline to the blat input box pre-fills
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commit | commitdiff | tree |
| 2011-04-20 |
Robert Buels | enable BLAST button for lots of feature seqs
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | enable the BLAST button for sequences on show_match_seq.pl
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | oops, stray debugging code
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | Merge branch 'topic/itag2.3'
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | add a find_release method to SGN::Feature::ITAG
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | make genome-data page support decimal ITAG release...
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commit | commitdiff | tree |
| 2011-04-19 |
Robert Buels | bugfix to GBrowse link generation. might not actually...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | search for _F and _R-style clone end names also in...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | up the padding a bit on columnar table cells
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | improve gbrowse xrefs searching on clone page
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | make gbrowse search both names and aliases to return...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | make external google searches in quick search use solgenomic...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | remove unnecessary ampersand
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | remove duplicate feature names from gbrowse xref tabular...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | search feature synonyms as well for providing site...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | make locus site xref search case-insensitive
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | bugfix to Feature view, mrna_and_protein_seq should...
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commit | commitdiff | tree |
| 2011-04-18 |
Robert Buels | tweak empty messages on gene pages for when sequences...
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commit | commitdiff | tree |
| 2011-04-15 |
Robert Buels | don't need an author in the pod
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commit | commitdiff | tree |
| 2011-04-15 |
Robert Buels | rewrite highlighted.mas again, now uses with_markup...
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| 2011-04-15 |
Robert Buels | make spaces in marked-up sequence strings be filtered...
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commit | commitdiff | tree |
| 2011-04-15 |
Robert Buels | another big refactor of highlighted.mas (used on show_match_...
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commit | commitdiff | tree |
| 2011-04-14 |
Robert Buels | fix broken stock page organism html
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | added dep on Bio::GMOD::Blast::Graph
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | tweak peptides track desc
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | add other matches from stephane, lumped together in...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | remove rps-blast track (there are no rpsblast annotations...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | fix description line for interpro domains in protein...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | add track for ITAG1 scaffolds
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | add region tracks for markers and infernal
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | add an infernal track in the overview, tweak infernal...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | added track for dbolser's beautiful BES alignments...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | remove several empty tracks from ITAG2
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| 2011-04-13 |
Robert Buels | update source name for eugene features, has changed...
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| 2011-04-13 |
Robert Buels | tweak ITAG2.3 genomic examples
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | update quick-search links in gbrowse confs to new quick...
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commit | commitdiff | tree |
| 2011-04-13 |
Robert Buels | new ITAG 2.3 assembly track, showing scaffolds and...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | first versions of ITAG2.3 gbrowse confs, forked from...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | make gbrowse cgi_url param support full URLs to a different...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | add a little debugging to quick_search only-possible...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | fix last_blast_db_id cookie setting, closes #1537
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | remove itag1_reference and itag1_tomato_bacs tracks...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2011-04-11 |
Robert Buels | phenotyped accessions section holds accessions, not...
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commit | commitdiff | tree |
| 2011-04-11 |
Robert Buels | add counts to ajax-populated info sections on cvterm...
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commit | commitdiff | tree |
| 2011-04-11 |
Robert Buels | add obsolete filtering back into recursive stocks as...
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commit | commitdiff | tree |
| 2011-04-11 |
Robert Buels | add comment explaining the TestMode config in SGN.pm
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commit | commitdiff | tree |
| 2011-04-10 |
Robert Buels | added Ambikon controller and theme-serving action
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commit | commitdiff | tree |
| 2011-04-09 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2011-04-08 |
Robert Buels | make show_match_seqs refuse to render full, very large...
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commit | commitdiff | tree |
| 2011-04-08 |
Robert Buels | off-by-one bugfix to new sequence highlighting
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commit | commitdiff | tree |
| 2011-04-08 |
Robert Buels | make mason/sequence/highlighted.mas use a subsequence...
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commit | commitdiff | tree |
| 2011-04-08 |
Robert Buels | POD paragraph fill
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commit | commitdiff | tree |
| 2011-04-08 |
Robert Buels | fix POD paragraph filling
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | improve layout of match-linking dialog in blast tool
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | make blast results link to the *hit region* in gbrowse
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | improve display of GBrowse site xrefs, now more clear...
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | delete commented code
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | support multiple queries in feature_xrefs fetch api
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | fix blast tool cache flushing
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | Merge branch 'topic/qtl_effects'
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | remove unnecessary shebang and wrong POD
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commit | commitdiff | tree |
| 2011-04-07 |
Robert Buels | in CGIs, don't throw, just die. try to keep $c use...
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commit | commitdiff | tree |
| 2011-04-06 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2011-04-06 |
Robert Buels | work around JSAN::ServerSide being junky
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commit | commitdiff | tree |
| 2011-04-06 |
Robert Buels | bugfix to stock search. there might be more than one...
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commit | commitdiff | tree |
| 2011-04-04 |
Robert Buels | on tomato genome data page, fix broken browse links...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | make map comparison page not completely horrible to...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | fix "compare entire maps" url on the cview index page
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | add useful css classes to the info section anchor tags
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | oops, forgot to lowercase html anchor names
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | add mRNA-specific feature page layout
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | make the ontology terms a default part of the basic...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | feature controller should lowercase the type name when...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | oops, missed one of the "Amino acid sequence" section...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | make sequence downloads include the feature desc if...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | tweak default feature page to make the residues section...
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | on second though, call them protein sequences
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | tweak obsolete messages in mason components
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | new customized feature view for polypeptide features
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commit | commitdiff | tree |
| 2011-04-01 |
Robert Buels | tweak descriptions of some feature sections
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