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Enable a simple test for CXGN::Page::Form::Static
2010-06-28
Duke Leto
Enable
a
simple test for CXGN:
:
Page::Form::
S
ta
t
i
c
commit
|
commitdiff
|
tree
2010-06-28
D
u
k
e L
e
t
o
Refactor print_j
s
on in CXGN:
:
Page::Form::Aj
a
xFor
m
P
age
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Ref
a
ctor
a Cview test a
n
d
get r
i
d of a
warning
commit
|
commitdiff
|
tree
2010-06-18
Duk
e
Leto
Steal p
a
gination_control
.
m
a
s fro
m
top
i
c/organi
s
m_search
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duk
e
Leto
Get r
i
d
of some war
n
ings
in gene
_
famil
y
_info
.
mas
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Properly
s
kip s
o
me validati
o
n tests and m
a
k
e
.
/Bu
i
l
d
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
D
u
ke Leto
Make a
test file fo
r
t
h
e
Q
TL
a
nalysi
s
page that skips
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duke
Leto
Refactor validation of urls into a modul
e
, SGN:
:
Test
commit
|
commitdiff
|
tree
2010-06-16
Du
k
e
Leto
Remov
e
AUTO_
U
RLS fe
a
t
u
re
f
rom validate_
a
ll
.
t, which
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Clea
n
u
p va
l
ida
t
e
_
all
.
t
s
o
me mor
e
and remove
dead code
commit
|
commitdiff
|
tree
2010-06-16
Duke
Let
o
Cl
e
a
n
up t
/
valida
t
e_all
.
t
commit
|
commitdiff
|
tree
2010-06-16
Duke Le
t
o
Add b
l
ib/* to
.
gitignore
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Re
-
e
nabl
e
t
h
e us
e
of
.
/B
u
ild te
s
t
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Fix th
e
QTL test
commit
|
commitdiff
|
tree
2010-06-16
Duke
Leto
Add
a
b
a
sic
test for qt
l
.
pl
commit
|
commitdiff
|
tree
2010-06-16
D
u
ke Leto
Check for pop_id in
q
tl
.
pl
and throw
a
n erro
r
if not
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Du
k
e Leto
Conve
r
t
a 2-a
r
g open i
n
SGN::Control
l
er::Clone::Genom
i
c
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke
L
eto
Clean u
p
CXGN::Cview::Chromosome:
:
ITAG, get r
i
d of
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
C
o
nvert to a 3-arg open
w
i
t
h
a better
error
m
e
ssage
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
D
u
ke Let
o
Convert
2
-
arg open
to 3-arg
in
C
XGN:
:
Transcript::Draw
C
ontigAl
i
gn
commit
|
commitdiff
|
tree
2010-06-11
D
uke
L
e
to
C
o
nvert 2-arg op
e
n's
i
n CXGN::
G
enefa
m
ily to
s
lu
r
p
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
C
l
ean up SG
N
::
I
mage
an
d
conve
r
t a 2-arg open to 3-arg
commit
|
commitdiff
|
tree
2010-06-11
Du
k
e Leto
G
et rid o
f
2
-arg open in CXGN::Bulk
commit
|
commitdiff
|
tree
2010-06-10
Duke
Leto
C
o
nve
r
t a 2-arg open to 3-arg
w
ith basic e
r
ror ha
n
dling
commit
|
commitdiff
|
tree
2010-06-10
D
u
k
e
L
eto
Improve muscle binary detecti
o
n
commit
|
commitdiff
|
tree
2010-06-09
Duke Leto
Add some more alig
n
_viewer
te
s
t
s,
which depend on the
.
.
.
commit
|
commitdiff
|
tree
2010-06-09
D
u
ke Leto
R
eplace another instance of open w
i
th slu
r
p in align_v
i
e
wer
commit
|
commitdiff
|
tree
2010-06-09
Duke L
e
to
Add a test
f
o
r
the basic al
i
gnment example
commit
|
commitdiff
|
tree
2010-06-09
Duke Leto
Use File::S
l
u
r
p
instead of op
e
n(
)
commit
|
commitdiff
|
tree
2010-06-08
D
uke Leto
Fix a
t
y
p
o in
the P
O
D
o
f t/tools/align_viewer
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Mor
e
tests for
a
lign_viewer and add
T
est
:
:Class as
.
.
.
commit
|
commitdiff
|
tree
2010-06-08
D
u
ke Leto
Add tests for valid in
p
ut to a
l
ign_vi
e
wer
commit
|
commitdiff
|
tree
2010-06-08
D
uke
L
eto
R
efactor g
e
t_ar
g
u
men
t
s call
commit
|
commitdiff
|
tree
2010-06-08
Du
k
e
L
eto
Add basic tes
t
s
for align_v
i
ewer
commit
|
commitdiff
|
tree
2010-06-08
Duk
e
Leto
Fix incorrect d
e
ath message in
t/bulk
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Realign and c
l
eanup validate_all
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Fixed
link to
j
apan
.
p
l
, close
s
#
9
98
commit
|
commitdiff
|
tree
2010-05-27
D
u
ke Leto
Only load CXGN
.
E
f
fects once on the uni
g
ene_
b
uild d
e
tail
.
.
.
commit
|
commitdiff
|
tree
2010-05-27
Duke Leto
Only
l
oad JS libs once in
u
n
igene_d
e
tail
.
mas
commit
|
commitdiff
|
tree
2010-05-24
Duke Let
o
Remove some more us
e
less debug output, but refrain
.
.
.
commit
|
commitdiff
|
tree
2010-05-24
Du
k
e Leto
Clean
u
p some of the Bulk modules
commit
|
commitdiff
|
tree
2010-05-21
Duke
Leto
Improve bulk
.
t and add a tes
t
for unige
n
e_co
n
ve
r
t
commit
|
commitdiff
|
tree
2010-05-18
Duke
L
e
to
Get rid
of
dead cod
e
and remov
e
print to STDERR
commit
|
commitdiff
|
tree
2010-05-18
D
uke Leto
Rev
e
rt 6a9
a
055cc
,
whi
c
h accidentall
y
undid a bunch
.
.
.
commit
|
commitdiff
|
tree
2010-05-18
Duke Leto
F
ix bulk
.
t
commit
|
commitdiff
|
tree
2010-05-14
D
uke Leto
Ad
d
vi
m
swap f
i
les
to
.
gitign
o
re
commit
|
commitdiff
|
tree