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Merge pull request #2805 from TriticeaeToolbox/topic/fix_accessions_upload_error
2020-02-28
Luka
s
Mueller
Merg
e
pull request #2805
from T
r
i
t
i
ceaeToolbox/topic
.
.
.
commit
|
commitdiff
|
tree
2020-02-28
Lukas Mueller
Merge pull re
q
uest #281
3
f
r
om
s
olge
n
omi
c
s/topic/ge
n
oty
p
e_dow
.
.
.
commit
|
commitdiff
|
tree
2020-02-28
Lukas Mue
l
ler
Merge p
u
ll requ
e
s
t #2810
from solgeno
m
ics/t
o
pi
c
/cross
_
family
.
.
.
commit
|
commitdiff
|
tree
2020-02-21
L
ukas Muell
e
r
M
e
r
ge pull r
e
quest
#
2
808 from solg
e
nomics/topi
c
/
f
ix_bug
commit
|
commitdiff
|
tree
2020-02-21
Lukas Mueller
Merge pul
l
r
equ
e
st
#
28
0
6 f
r
om solg
e
n
o
mics
/
topi
c
/duplication
_
.
.
.
commit
|
commitdiff
|
tree
2020-02-18
L
ukas Mueller
Merge pull reques
t
#2799 from so
l
g
e
nomics/topic/
t
rait_ad
d
i
t
i
.
.
.
commit
|
commitdiff
|
tree
2020-02-14
Luka
s
M
u
elle
r
Merge p
u
ll request #2794 from solgenom
i
cs/
t
opic/
f
ix_
t
raits
_
s
.
.
.
commit
|
commitdiff
|
tree
2020-02-14
Lukas Muelle
r
Merg
e
pull request #2795
f
rom solgen
o
m
i
c
s/topi
c
/fix_trial_ph
.
.
.
commit
|
commitdiff
|
tree
2020-02-10
Lukas Mueller
Merge pul
l
request #
2
787 from solgenomics/topi
c
/crosses_
t
o_t
.
.
.
commit
|
commitdiff
|
tree
2020-02-10
Lukas M
u
elle
r
Merg
e
p
ull
request #278
3
from
solgenomics/topic/fix
_
genotype
.
.
.
commit
|
commitdiff
|
tree
2020-02-10
Lukas Mueller
Merge pull request #
2
786 from
s
o
lgen
o
mics/t
o
pic/stock_update
.
.
.
commit
|
commitdiff
|
tree
2020-02-10
Luk
a
s M
u
eller
Merge pull request #2
7
85 from solgeno
m
i
c
s/topic
/
fi
x
_links_se
.
.
.
commit
|
commitdiff
|
tree
2020-02-04
Lukas
M
uel
l
er
Merg
e
pull request #2779 from solgeno
m
ics/top
i
c/backend_gen
o
.
.
.
commit
|
commitdiff
|
tree
2020-02-04
Lu
k
as M
u
eller
Merge pull request #
2
7
8
1 from solgenomics/
t
opic/fix_se
q
uen
c
e
.
.
.
commit
|
commitdiff
|
tree
2020-01-24
Lukas M
u
elle
r
Merge
p
ul
l
reques
t
#2
7
69
from solgenomic
s
/top
i
c
/
fix_tests
commit
|
commitdiff
|
tree
2020-01-24
Luka
s
Muelle
r
c
o
m
mit t/unit_mech dir
.
commit
|
commitdiff
|
tree
2020-01-24
Lukas
M
ueller
move un
i
t_fixtur
e
/AJA
X
and unit_fixtu
r
e/Controller
.
.
.
commit
|
commitdiff
|
tree
2020-01-22
L
ukas Mueller
add POD for ne
w
command
line option
.
commit
|
commitdiff
|
tree
2020-01-22
Luk
a
s M
u
eller
a
dd option to dump the
c
onfig inf
o
.
commit
|
commitdiff
|
tree
2020-01-22
Lukas Mueller
star
t
at db patch # 117
to save time (all the patche
s
.
.
.
commit
|
commitdiff
|
tree
2020-01-22
Lukas Mueller
update fixture with latest patches
.
commit
|
commitdiff
|
tree
2020-01-17
Lukas
Muell
e
r
f
i
x c
o
nflicts in CXGN::Genotype:
:
Se
a
rch
.
commit
|
commitdiff
|
tree
2020-01-17
Luk
a
s Mueller
in
c
o
m
pl
e
t
e
refactorin
g
f
o
r
i
terator
.
commit
|
commitdiff
|
tree
2020-01-17
Lukas
M
ueller
Merge pul
l
r
e
quest #2756
f
r
o
m
solgenomics/topic/mana
g
e_genot
.
.
.
commit
|
commitdiff
|
tree
2020-01-12
L
ukas
M
ueller
Merge pu
l
l request #27
5
5 from solgenomics/topi
c
/breedbase
_
de
.
.
.
commit
|
commitdiff
|
tree
2019-12-26
L
u
kas Muelle
r
Merge
p
ull request #2722 from solgenom
i
cs/topic/delete_cv
t
er
.
.
.
commit
|
commitdiff
|
tree
2019-12-26
Lukas M
u
eller
m
ove CXGN
:
:
B
rAPI
:
:
v
1
:
:Markerprofiles
from
g
et_genotyp
e
_info
.
.
.
commit
|
commitdiff
|
tree
2019-12-26
L
u
kas Muelle
r
r
et
u
rn the
n
u
mber of
r
ows gener
a
ted in the init_genotype_it
e
.
.
.
commit
|
commitdiff
|
tree
2019-12-20
L
ukas Muel
l
er
Merge pull
r
eque
s
t #
2
7
29 from solgenomics
/
t
o
pic/fix_m
i
ssing
_
.
.
.
commit
|
commitdiff
|
tree
2019-12-09
Lukas Mu
e
l
l
er
never delete cvterms that h
a
ve
a
ssociated
phenotypes
.
commit
|
commitdiff
|
tree
2019-12-07
Luka
s
Mueller
tweaks
.
commit
|
commitdiff
|
tree
2019-12-07
Lukas Mueller
add a cvterm del
e
tion script
.
commit
|
commitdiff
|
tree
2019-11-25
Lukas Muel
l
er
Merge
p
u
l
l
request #2706 from solgenom
i
cs/to
p
ic/batch_trial_
.
.
.
commit
|
commitdiff
|
tree
2019-11-25
Lukas Mueller
Merge
p
ull re
q
uest #2696
from solgenomics/topic/nir_spe
c
tra_
.
.
.
commit
|
commitdiff
|
tree
2019-11-20
Luka
s
Mueller
Merge pul
l
r
e
qu
e
st
#
2698 f
r
om s
o
lgenom
i
cs/topic/fix_igd_plat
.
.
.
commit
|
commitdiff
|
tree
2019-11-18
Luk
a
s Mu
e
l
ler
Merge pull request #2679 from Trit
i
ceaeToolb
o
x/
t
o
pic
.
.
.
commit
|
commitdiff
|
tree
2019-11-18
Lukas Muelle
r
M
e
rge pu
l
l request #2
6
83 from Tritice
a
eToo
l
box/topic
.
.
.
commit
|
commitdiff
|
tree
2019-11-18
Lukas M
u
e
ller
M
e
rge pull request #2685 from solgen
o
mics/topic/addYea
r
sToTr
.
.
.
commit
|
commitdiff
|
tree
2019-11-15
Lukas Mueller
Merge pull reques
t
#
2690 from solgenomics/topic/Datas
e
t_File
.
.
.
commit
|
commitdiff
|
tree
2019-11-15
Lukas Mueller
Merge pull request #26
8
9 fr
o
m solgenomi
c
s/top
i
c/solgs
.
.
.
commit
|
commitdiff
|
tree
2019-11-12
Luka
s
Mue
l
ler
Merge pull
reques
t
#2681 from s
o
lgenomics/topic
/
solgs
.
.
.
commit
|
commitdiff
|
tree
2019-11-01
Lukas
Mueller
adapt BLAST
f
o
r
re
m
o
t
e sl
u
rm
.
commit
|
commitdiff
|
tree
2019-10-30
L
u
ka
s
Muell
e
r
add missing dep
e
n
dency
C
XGN::Cvte
r
m
.
commit
|
commitdiff
|
tree
2019-10-30
L
ukas
M
u
eller
remove forgotten c
o
nflict marker
.
commit
|
commitdiff
|
tree
2019-10-30
Lukas Mueller
Merge b
r
a
n
ch 'master' into topic/breedba
s
e_default
commit
|
commitdiff
|
tree
2019-10-30
Luka
s
Mueller
r
e
solve conflict in
C
XGN::Trial
.
commit
|
commitdiff
|
tree
2019-10-28
Lukas Mueller
Update README
.
md
commit
|
commitdiff
|
tree
2019-10-28
Lu
k
a
s
Mueller
Update README
.
md
commit
|
commitdiff
|
tree
2019-10-28
Lukas Mu
e
ller
Update
R
EADME
.
md
commit
|
commitdiff
|
tree
2019-10-28
Lukas
M
ueller
Update README
.
md
commit
|
commitdiff
|
tree
2019-10-28
L
u
kas
M
u
eller
U
p
date README
.
md
commit
|
commitdiff
|
tree
2019-10-28
Luk
a
s Mueller
Updat
e
REA
D
M
E
.
m
d
commit
|
commitdiff
|
tree
2019-10-28
Lukas Mueller
Update README
.
m
d
commit
|
commitdiff
|
tree
2019-10-28
Lukas M
u
eller
Update README
.
m
d
commit
|
commitdiff
|
tree
2019-10-28
Lu
k
as Muell
e
r
Update README
.
md
commit
|
commitdiff
|
tree
2019-10-28
Luk
a
s
M
ueller
Update README
.
md
commit
|
commitdiff
|
tree
2019-10-23
Lukas Mue
l
l
e
r
Merge pu
l
l request #
2
670
f
r
o
m
s
olgenomics/topic/s
e
quencing
_
s
.
.
.
commit
|
commitdiff
|
tree
2019-10-21
Luk
a
s Mueller
Merge
p
u
ll reque
s
t #2
6
64
from so
l
genomics/is
a
ak
-
patch-2-1
commit
|
commitdiff
|
tree
2019-10-21
L
u
kas Mueller
Merge pull request #
2
6
66 from solgenomics/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2019-10-21
Lukas Mu
e
ller
Merge
p
ull request #2667
from solgenomics/topi
c
/cro
s
ses_to_list
commit
|
commitdiff
|
tree
2019-10-16
Luka
s
M
u
eller
Merge pull r
e
qu
e
st
#2660 from solgenomics/i
s
aak-
s
e
l
ection
.
.
.
commit
|
commitdiff
|
tree
2019-10-16
Lu
k
as Mue
l
ler
M
e
r
g
e pull
reques
t
#2661 from sol
g
enomics/topic/fix_cr
o
s
s_is
s
ues
commit
|
commitdiff
|
tree
2019-10-16
Lukas Mueller
Merge
p
u
ll requ
e
st #2
6
59 from s
o
lgenomics/topic/fix_synonym_
.
.
.
commit
|
commitdiff
|
tree
2019-10-16
Lukas Mueller
Merge pull reque
s
t #2653 from solgenomi
c
s/topic/sequenced_ac
.
.
.
commit
|
commitdiff
|
tree
2019-10-16
Luk
a
s Muel
l
er
Merge pull request #2
6
50 from s
o
lgenomic
s
/topic/bla
s
t_fix
commit
|
commitdiff
|
tree
2019-10-15
Lukas Mueller
M
e
rg
e
pull re
q
uest #2657 from solg
e
nomics/topi
c
/poly
c
ross
commit
|
commitdiff
|
tree
2019-10-15
Luk
a
s Mueller
remove unwante
d
edit back
u
p fi
l
e
.
commit
|
commitdiff
|
tree
2019-10-13
Luka
s
M
u
e
l
ler
fi
x
test for seque
n
c
ing i
n
fo
.
commit
|
commitdiff
|
tree
2019-10-13
Lukas Mueller
f
i
x
i
ssue with rank
f
ield; fix is
s
ue with websi
t
e
and
.
.
.
commit
|
commitdiff
|
tree
2019-10-12
Lukas Mueller
Mer
g
e
p
u
ll req
u
est #26
4
6 from solgenomics/topic/f
i
x_cross
commit
|
commitdiff
|
tree
2019-10-10
Lukas
Mu
e
l
ler
M
erge pull r
e
quest #2642
f
r
o
m solgenomics/topic/
s
o
l
gs
.
.
.
commit
|
commitdiff
|
tree
2019-10-09
Lukas Mueller
Me
r
ge b
r
anch
'mas
t
er' into
topic/blast_fix
commit
|
commitdiff
|
tree
2019-10-09
Luk
a
s Mueller
t
w
eak blastn param
e
ters to mak
e
it work
.
commit
|
commitdiff
|
tree
2019-10-09
Luk
a
s Mue
l
l
er
u
s
e
new blast binaries
.
commit
|
commitdiff
|
tree
2019-10-09
Lukas Mue
l
ler
provide a sc
h
ema object for s
t
atic
pages as some may
.
.
.
commit
|
commitdiff
|
tree
2019-10-08
Luk
a
s
Muel
l
e
r
Merge pu
l
l request #2641 fro
m
sol
g
enomics/topic/delete_cross
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
L
ukas Muel
l
er
Merg
e
p
ull request #2
6
39 from solg
e
nomic
s
/t
o
pic
/
developer_do
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
Lukas Mueller
M
erge pul
l
r
e
quest
#
2638 fr
o
m solgenomics
/
topic/la
b
el_design
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
Lukas Mueller
M
erge pull request
#262
7
fr
o
m
solgenomi
c
s/top
i
c/time_onto_upda
t
e
commit
|
commitdiff
|
tree
2019-10-07
Lukas
Mueller
M
erge p
u
ll request #2631 from solgenomic
s
/topic/fix_db_p
a
tch
commit
|
commitdiff
|
tree
2019-10-07
Lu
k
as Mue
l
l
e
r
Merg
e
pull reques
t
#2632 from s
o
lgeno
m
ics/t
o
pic/dele
t
e_cross
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
Luka
s
M
u
el
l
er
Merg
e
pull req
u
est #
2
63
4
from solgenomi
c
s/t
o
pic/
s
equenced_ac
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
Luka
s
Mueller
M
erge pull re
q
uest #26
3
7 from solg
e
nom
i
cs/topic/
u
pdate_map_c
a
l
l
s
commit
|
commitdiff
|
tree
2019-10-02
L
u
k
as Mueller
M
e
r
ge pull
r
equest #2630 f
r
om solgenomics/top
i
c/fix_bugs
commit
|
commitdiff
|
tree
2019-09-30
Lukas Mueller
Mer
g
e
pull reque
s
t #2
6
24 from s
o
l
g
en
o
m
ics/
t
opic/genot
y
pe_st
o
.
.
.
commit
|
commitdiff
|
tree
2019-09-30
L
ukas M
u
elle
r
Merge p
u
ll reque
s
t #
2
582
from TriticeaeToolbox/topic
.
.
.
commit
|
commitdiff
|
tree
2019-09-24
Lukas Mueller
Merge pull request #2496 f
r
o
m solgenomic
s
/topic/d
e
le
t
e
_cross
commit
|
commitdiff
|
tree
2019-09-24
Lukas
Mueller
M
e
r
ge pull reque
s
t #2626 from
s
olgen
o
mi
c
s/topic/cross_seedlo
t
commit
|
commitdiff
|
tree
2019-09-14
Lukas
M
u
el
l
er
M
e
rge
pull request #2619
f
r
om
s
o
lgenomic
s
/topic/new_cros
s
_type
commit
|
commitdiff
|
tree
2019-09-13
Lukas Mue
l
l
e
r
Merge pull re
q
u
est #2611 from Triti
c
eaeToo
l
box/topic
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
Luk
a
s
Mue
l
l
er
add re
t
rie
v
ed data
from o
l
d syste
m
to sequ
e
ncing in
f
o
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
Lukas Muell
e
r
ad
d
db patch
f
or sequenced acce
s
si
o
ns
.
commit
|
commitdiff
|
tree
2019-09-11
Lukas Muelle
r
add
i
n
de
x
files for blast test fi
l
e
.
commit
|
commitdiff
|
tree
2019-09-10
Lukas Mueller
r
emove alerts
.
commit
|
commitdiff
|
tree
2019-09-10
Lukas Mueller
fix quer
y
l
e
n
gth extracti
o
n
.
commit
|
commitdiff
|
tree
2019-09-10
Lukas Mueller
mak
e
blast uti
l
s w
o
rk with blast
d
bc
m
d, not fas
t
acm
d
.
.
.
commit
|
commitdiff
|
tree
2019-09-09
Lukas Mueller
p
rin
t
which accs are
n
ot in d
a
tabase
.
commit
|
commitdiff
|
tree
2019-09-09
Lu
k
as M
u
elle
r
add
s
c
ript to tra
n
sfer
g
enome in
f
o f
r
om organism to
.
.
.
commit
|
commitdiff
|
tree
2019-09-09
Lukas Mueller
imple
m
en
t
e
d
i
t
ing of an existing sequencing info record
.
commit
|
commitdiff
|
tree
2019-09-08
L
uka
s
M
u
eller
ma
k
e
d
elet
i
on work
.
commit
|
commitdiff
|
tree
next