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Convert a 2-arg open in SGN::Controller::Clone::Genomic to a slurp
2010-06-11
Duke Leto
Con
v
ert a 2-arg op
e
n in SGN::Controller::Clo
n
e::Genomic
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke Let
o
Clean up CXGN::Cview::Chromosome::ITAG, g
e
t
r
id of
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke
Leto
Convert
t
o
a
3-arg open
w
i
th a bette
r
err
o
r message
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke
L
eto
Convert 2-arg o
p
en to 3-ar
g
in
C
X
G
N::Transcript::DrawCont
i
gAlign
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
C
onvert 2-
a
r
g
open's
i
n C
X
GN:
:
Gene
f
a
m
ily to slurp
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
Clean
u
p SGN::Image and c
o
n
vert
a
2-
a
rg
o
p
en
t
o 3-arg
commit
|
commitdiff
|
tree
2010-06-11
Du
k
e Leto
Get rid of 2-arg
o
pen i
n
CXGN::B
u
lk
commit
|
commitdiff
|
tree
2010-06-10
Duke Leto
Con
v
er
t
a 2-ar
g
open to 3-arg
w
i
th basic error
h
and
l
in
g
commit
|
commitdiff
|
tree
2010-06-10
Duke Leto
Improve mu
s
cle binary detection
commit
|
commitdiff
|
tree
2010-06-09
Duk
e
Leto
Add some more align_v
i
ewe
r
tests, w
h
i
c
h dep
e
nd on the
.
.
.
commit
|
commitdiff
|
tree
2010-06-09
Duke Le
t
o
Replace
anothe
r
instance of op
e
n with slurp in
a
lign_vie
w
er
commit
|
commitdiff
|
tree
2010-06-09
D
u
ke Let
o
Add
a test
f
o
r the basic alignment
e
xample
commit
|
commitdiff
|
tree
2010-06-09
Duke Leto
Use
File
:
:Sl
u
rp inste
a
d of ope
n
()
commit
|
commitdiff
|
tree
2010-06-08
D
uke
L
et
o
Fix
a
t
y
po in th
e
PO
D
o
f
t/to
o
ls/alig
n
_viewe
r
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Mor
e
te
s
ts for ali
g
n_viewer
and add Tes
t
:
:
Class as
.
.
.
commit
|
commitdiff
|
tree
2010-06-08
D
u
ke Leto
Add
t
e
sts
fo
r
valid inpu
t
to align_viewer
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Refactor get_argume
n
t
s call
commit
|
commitdiff
|
tree
2010-06-08
Duke
L
et
o
Add basic test
s
for
a
l
i
gn_view
e
r
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Fix incorrect
d
eath mes
s
age in t
/
bulk
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Let
o
R
ealign
a
nd cleanup validate_a
l
l
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Fixed link to japan
.
pl, closes #998
commit
|
commitdiff
|
tree
2010-05-27
Du
k
e L
e
to
Only load CXGN
.
Effe
c
ts once on th
e
unigene_b
u
ild d
e
tail
.
.
.
commit
|
commitdiff
|
tree
2010-05-27
D
u
ke Leto
Only load JS l
i
bs once in unig
e
ne_detail
.
mas
commit
|
commitdiff
|
tree
2010-05-24
D
u
ke L
e
to
Remove s
o
me more useless debug outp
u
t, but refrain
.
.
.
commit
|
commitdiff
|
tree
2010-05-24
Duke Leto
Clean
up some of
t
h
e Bulk modules
commit
|
commitdiff
|
tree
2010-05-21
Duke Leto
Improve bulk
.
t and add
a t
e
st
for unig
e
ne
_
con
v
ert
commit
|
commitdiff
|
tree
2010-05-18
D
uke Leto
G
et rid of dead
code and remove print to
S
TDERR
commit
|
commitdiff
|
tree
2010-05-18
Duke Let
o
Revert 6a9a055
c
c, which ac
c
ide
n
tally u
n
did a bunch
.
.
.
commit
|
commitdiff
|
tree
2010-05-18
Du
k
e Le
t
o
Fix bulk
.
t
commit
|
commitdiff
|
tree
2010-05-14
Duke Leto
Ad
d
v
i
m swa
p
f
i
les
to
.
gitignore
commit
|
commitdiff
|
tree
2010-05-13
Duke
L
eto
Ad
d
test
for bulk bac_en
d
commit
|
commitdiff
|
tree
2010-05-13
Duke Leto
Add tests
f
o
r microarray a
n
d clone_se
a
rch m
o
d
e
s o
n
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Duke L
e
to
A
dd
mo
r
e tests for down
l
oading bulk da
t
a
t
o
t/bulk
.
t
commit
|
commitdiff
|
tree
2010-05-13
D
u
ke Leto
A
dd more tests to t/
b
u
lk
.
t
commit
|
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|
tree