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Merge branch 'master' into topic/secretom
2011-04-26
Jo
n
a
t
h
a
n
"
Duke"
.
.
.
Merge branch 'master
'
into topic/secretom
commit
|
commitdiff
|
tree
2011-04-22
J
ona
t
han
"
D
uke"
.
.
.
R
e
move the minified
c
ol
o
r
b
ox and reset c
o
l
o
rb
o
x
.
js
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "Duke"
.
.
.
Prop
e
r
ly
s
quash redefinition w
a
rnings
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "Duke"
.
.
.
Warning squash in info_section
.
mas
commit
|
commitdiff
|
tree
2011-04-15
Jonathan "Duke"
.
.
.
M
erge branch 'topic/tmpredpl'
commit
|
commitdiff
|
tree
2011-03-24
J
o
n
a
than "D
u
k
e
"
.
.
.
Merge remote
-
tracki
n
g branch 'ori
g
in
/
topi
c
/stock_search'
commit
|
commitdiff
|
tree
2011-03-24
Jonathan "Duke"
.
.
.
Mer
g
e r
e
mote-track
i
n
g
branch 'ori
g
in/t
o
pic/stock_sear
c
h
.
.
.
commit
|
commitdiff
|
tree
2011-03-24
Jonatha
n
"Du
k
e"
.
.
.
Use
u
nm
i
nif
i
e
d the jq
u
ery, bec
a
use i
t
will be mi
n
ified
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonatha
n
"Duke"
.
.
.
Re
m
ove a u
s
eless use
of catfile, rbuels++
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "
D
uke"
.
.
.
Make stoc
k
sea
r
c
h work p
r
operly f
r
om direct_se
a
rch
.
pl
commit
|
commitdiff
|
tree
2011-03-23
J
o
natha
n
"Duke"
.
.
.
Merge
remote-tr
a
cking branch
'
origin/topic/sto
c
k_s
e
arch
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
J
onathan "Duke"
.
.
.
Store the stock sear
c
h form in an ex
t
ern
a
l
YAML file
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
container
_
attri
b
utes is n
o
t
a valid F
o
r
mFu att
r
ibu
t
e
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonatha
n
"Duk
e
"
.
.
.
Merg
e
remote-tr
a
cking
branch 'origi
n
/
t
op
i
c/stock_search
.
.
.
commit
|
commitdiff
|
tree
2011-03-22
J
onathan "Duke"
.
.
.
wip
commit
|
commitdiff
|
tree
2011-03-17
Jonathan "Duke
"
.
.
.
Add
a
stub for updating the tra
i
t range when the trait
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
Jonathan "Duke"
.
.
.
Add
a div that can be populat
e
d with t
h
e valid tra
i
t
.
.
.
commit
|
commitdiff
|
tree
2011-03-16
Jo
n
athan "Duke
"
.
.
.
F
ix stock se
a
r
c
h pagin
a
tion
l
in
k
s
a
nd refactor cont
r
oller
commit
|
commitdiff
|
tree
2011-03-16
Jonathan
"
D
uke"
.
.
.
Refactor stock con
t
roll
e
r
.
No functional changes
commit
|
commitdiff
|
tree
2011-03-15
J
onathan "
D
uk
e
"
.
.
.
Show the ad
v
anced opti
o
ns in stock search re
s
u
l
t
s if
.
.
.
commit
|
commitdiff
|
tree
2011-03-14
Jon
a
than "Duke"
.
.
.
U
p
date the
'
A
bout SGN' blu
r
b t
o
be more inclusive t
o
.
.
.
commit
|
commitdiff
|
tree
2011-03-15
Jonatha
n
"Duke"
.
.
.
Fix syn
t
ax error
in organ
i
s
m
controller test
commit
|
commitdiff
|
tree
2011-03-11
Jo
n
athan "Du
k
e"
.
.
.
Make
t
he ad
v
ance
d
checkbox on stock
s
earch final
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Jonathan
"
Duke"
.
.
.
U
se the barely
-
d
ocumented
conta
i
n
er_at
t
ributes
in FormFu
commit
|
commitdiff
|
tree
2011-03-10
J
o
nathan "Duke"
.
.
.
Tel
l
FormFu
t
o add CSS cla
s
s
e
s
to certain advanced
.
.
.
commit
|
commitdiff
|
tree
2011-03-02
Na
a
ma
Menda
adde
d
printing phenotype data
commit
|
commitdiff
|
tree
2011-03-02
Naama Menda
component
f
o
r displaying
p
henotype da
t
a
commit
|
commitdiff
|
tree
2011-02-28
J
ona
t
han
"Duke"
.
.
.
perltidy on as
s
ing_ow
n
er
.
p
l
commit
|
commitdiff
|
tree
2011-02-28
Jona
t
han "D
u
k
e"
.
.
.
Clean up cr
u
ft
in assign_owner
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
f
i
xed s
e
arch by editor
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
Revert
"ad
d
ed undef
opt
i
o
n to
a
llele mode o
f
inherit
a
n
c
e"
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
n
o
ne
e
d for person object in
the locus ajax
test, sin
c
e
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
testin
g
if
t
he allele s
e
ction is p
r
int
e
d
correct
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Me
n
da
test for stoc
k
ajax associate_locus function
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama Menda
invalid stock
o
r alle
l
e id
e
rror is
n
ow sent for the
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma Mend
a
test
f
or people ajax cont
r
oller
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
test for lo
c
u
s
ajax control
l
e
r
commit
|
commitdiff
|
tree
2011-02-28
Robert Buels
add a fo
r
m-submitted va
r
to
baby
WWW::Mechanize tests
commit
|
commitdiff
|
tree
2011-02-28
Robe
r
t B
u
els
remove tab c
h
a
r
s
from stock search
.
mas
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
t
rying to get teh stock_sear
c
h
_
form to submit in
t
h
e
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a
Menda
tryin
g
to
f
ix the stock
search test
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
testing search stock by
e
d
it
o
r
commit
|
commitdiff
|
tree
2011-02-28
N
a
a
m
a Menda
added
s
o
m
ething to stockprop_GET
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama Menda
a
d
d
ed
c
heck i
f
user is
logged in with the correct privileges
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama
Menda
type
_
id
was ambiguous
.
e
xists in
s
t
o
ck
a
n
d stockpr
o
p
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
added search stock
b
y
edi
t
or +
a
ut
o
comp
l
e
tio
n
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma
Menda
w
rote form
.
mas parameters m
o
re
reada
b
le
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
fixed l
i
n
k for submitting new s
t
ock,
a
nd added option
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
fixed link to stock p
a
ge
commit
|
commitdiff
|
tree
2011-02-28
N
a
am
a
Menda
added s
e
a
rch stock by editor name, stock obje
c
t and
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
do not p
r
int allele table heade
r
s
if no alleles are
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Me
n
da
fixed stock l
i
n
k
to current url
commit
|
commitdiff
|
tree
2011-02-28
Naama Mend
a
add
e
d an AJA
X
REST contro
l
l
e
r for
sgn people
.
Currently
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Mend
a
mov
e
d
all
e
le secti
o
n t
o
a javascript div
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
chec
k
ing
user privileges before creat
i
ng ne
w
s
t
o
c
kp
r
op
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
f
ixing the associate
locus function
a
lity o
n
the
stock
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
docum
e
ntation
f
or javascript form obj
e
ct
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
loading scr
i
pt for solcap
s
np
geno
t
ypes
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
a
d
ded link to stock o
w
ners
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Menda
added fun
c
tion fo
r
as
s
o
c
iating l
o
ci
commit
|
commitdiff
|
tree
2011-02-28
Naama M
e
nda
adde
d
for
m
for
brow
s
ing loci to be
associated wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
aama Mend
a
rem
o
ved some perl cod
e
f
r
om allele comp
o
nent
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
e
n
da
add
_
p
u
b
l
icat
i
on wor
k
s now for stocks
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
db
p
a
tch
for mo
v
ing
t
he
s
tock publications
t
o the right
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
added
a
linked loci s
e
ctio
n
.
Need to add the js
form
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
aama Menda
printing some stock proper
t
ie
s
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
added m
o
re i
n
fo
+ synonym list to
the
s
t
ock
p
age
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
m
o
ved t
h
e phenotyp
e
search
tab to p
o
int to new stock
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
m
o
ved the stock search form to a mason component
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Du
k
e
"
.
.
.
Moderni
z
e and
uncrufti
f
y the cview
index
.
mas a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonath
a
n "Duke"
.
.
.
Add some k
l
i
n
g
on sensibility to Secr
e
t
o
m code and clean
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
J
onath
a
n "Duke"
.
.
.
R
emove cr
u
ft f
r
om cv
i
ew index
.
pl
commit
|
commitdiff
|
tree
2011-02-04
J
onathan "Duke"
.
.
.
Refactor Orga
n
ism controller tests a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Pr
o
perly skip I
T
A
G
re
l
ease test
s
when required data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Add t/data to
.
gitignore
commit
|
commitdiff
|
tree
2011-02-04
Jon
a
than "Duke"
.
.
.
Properly warn the exi
t
c
o
de if something
f
ails
in SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jo
n
athan "Duke"
.
.
.
Perltidy
o
n t/phenome/qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "
D
uke"
.
.
.
Convert bulk t
e
st
s
t
o us
e
SGN:
:
Test::WWW::Mec
h
anize
commit
|
commitdiff
|
tree
2011-02-01
Jo
n
a
t
h
a
n "Duke"
.
.
.
Ma
k
e SGN::Build report better errors when checki
n
g
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonatha
n
"
D
uke"
.
.
.
Move
S
GN::View::Email::ErrorEmail tests
t
o a nicer
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonat
h
an "D
u
ke"
.
.
.
Skip
some Q
T
L tests if
t
he hea
t
map is not present,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
M
ake SGN::V
i
e
w::Stock gener
a
te cvterm links from cv
t
erm
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
S
k
ip
some te
s
ts if member_
s
earch_form is not
a
vail
a
ble
commit
|
commitdiff
|
tree
2011-01-31
Jonat
h
a
n "Duke"
.
.
.
A
dd some diagn
o
sitcs an
d
a
test for SG
N
::Contr
o
ller
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
on
a
than "Duke"
.
.
.
Skip some ge
n
omic
clone test
s
if the rel
e
vant form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan
"Duke"
.
.
.
Giv
e
Bio:
:
SecreTary::TMpred moder
n
klingon-like powers
commit
|
commitdiff
|
tree
2011-01-31
Jon
a
than "
D
uke"
.
.
.
Per
l
ti
d
y on Bio::Secre
T
ary::
T
Mpre
d
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Cach
e
t
he db when loo
k
ing up fe
a
ture_cv
t
erms
an
d
p
re
v
ent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonatha
n
"Duke"
.
.
.
up
d
a
te
.
gitignore
commit
|
commitdiff
|
tree
2011-01-28
J
onatha
n
"Duke"
.
.
.
Move SGN::View::Em
a
i
l tests
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "
D
u
ke"
.
.
.
Pr
e
ttify SGN::Controller::Stock
commit
|
commitdiff
|
tree
2011-01-28
J
onath
a
n "Duke"
.
.
.
Make som
e
trivi
a
l changes
t
o trig
g
e
r
jitterbug
commit
|
commitdiff
|
tree
2011-01-26
Jon
a
tha
n
"Duke"
.
.
.
Merge branch 'topic/contact'
commit
|
commitdiff
|
tree
2011-01-26
Jonath
a
n "Duke
"
.
.
.
G
e
t user e
m
a
il correctly
commit
|
commitdiff
|
tree
2011-01-26
Jon
a
than "Duke"
.
.
.
Moderniz
e
th
e
Contact Controller
commit
|
commitdiff
|
tree
2011-01-26
Jon
a
tha
n
"Duke"
.
.
.
Perltidy on locus_dis
p
lay
.
pl
commit
|
commitdiff
|
tree
2011-01-26
Jo
n
a
t
han "Duke"
.
.
.
Refactor some
S
GN::Au
t
hentication::*
c
o
de
commit
|
commitdiff
|
tree
2011-01-24
Jonathan "Duke"
.
.
.
U
s
e SGN::
V
iew::Email instead
o
f the deprecated C
X
GN
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonath
a
n
"
Duke"
.
.
.
Rem
o
ve /
t
ools/contact
.
pl and all r
e
fer
e
n
c
es to it,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonatha
n
"Du
k
e"
.
.
.
Modernize cosii_su
b
m
i
ssion
commit
|
commitdiff
|
tree
next