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Merge branch 'master' into topic/secretom
2011-04-26
Jonathan "
D
uk
e
"
.
.
.
M
e
rge
b
ranc
h
'master' in
t
o
topic/secr
e
tom
commit
|
commitdiff
|
tree
2011-04-22
Jonathan "Duke"
.
.
.
Remo
v
e th
e
m
i
n
i
fie
d
co
l
o
r
box and
reset colorb
o
x
.
js
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
J
o
nathan "Duk
e
"
.
.
.
Pro
p
erl
y
squ
a
sh red
e
finition warn
i
ngs
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "Du
k
e"
.
.
.
Warning squash
in info_se
c
tio
n
.
mas
commit
|
commitdiff
|
tree
2011-04-15
Jonathan "Duke"
.
.
.
Merge branch 'topic/tmpredpl'
commit
|
commitdiff
|
tree
2011-03-24
Jon
a
t
han "Duke"
.
.
.
Merge
r
emote-tracking b
r
anch
'
ori
g
in/topi
c
/stock_search'
commit
|
commitdiff
|
tree
2011-03-24
Jonathan "Du
k
e"
.
.
.
Merge remote-tracking branch 'origin/topic/st
o
ck_search
.
.
.
commit
|
commitdiff
|
tree
2011-03-24
Jonathan "D
u
ke"
.
.
.
U
s
e
unmin
i
fied the jquery, because it will
be min
i
fied
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jona
t
han "Duk
e
"
.
.
.
Remove a
u
seless use of c
a
tfile, rbuels++
commit
|
commitdiff
|
tree
2011-03-23
J
o
nathan "Duke"
.
.
.
Make stock search w
o
rk properly from
dire
c
t_s
e
arch
.
pl
commit
|
commitdiff
|
tree
2011-03-23
Jonatha
n
"Duke"
.
.
.
M
e
rge remote
-
track
i
ng b
r
a
n
c
h
'
origin
/
topi
c
/
stock_s
e
arch
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
Store t
h
e stock
s
earch form in an external YAML file
commit
|
commitdiff
|
tree
2011-03-23
Jonathan
"Du
k
e
"
.
.
.
conta
i
ner_attributes
i
s not a valid FormF
u
attribute
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "D
u
ke"
.
.
.
Merge remote-tracking bra
n
c
h
'origin/topi
c
/
stock_sear
c
h
.
.
.
commit
|
commitdiff
|
tree
2011-03-22
Jona
t
han
"
D
uke"
.
.
.
wip
commit
|
commitdiff
|
tree
2011-03-17
J
o
na
t
han "Duke"
.
.
.
Add a stub f
o
r up
d
ating the trait range
when the
t
rai
t
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
J
onathan "Duke"
.
.
.
Add a div that can be pop
u
lat
e
d with the valid trait
.
.
.
commit
|
commitdiff
|
tree
2011-03-16
Jonathan "Duke"
.
.
.
Fix stock search p
a
ginatio
n
links and re
f
actor controller
commit
|
commitdiff
|
tree
2011-03-16
Jo
n
athan
"Duke"
.
.
.
Ref
a
ctor stock c
o
ntrol
l
er
.
No func
t
ional c
h
an
g
e
s
commit
|
commitdiff
|
tree
2011-03-15
Jonathan "Duke"
.
.
.
S
h
ow t
h
e ad
v
a
nced op
t
ions in stock search results if
.
.
.
commit
|
commitdiff
|
tree
2011-03-14
Jonathan "Duke"
.
.
.
Update the 'About
S
GN' blurb to be more i
n
clusive to
.
.
.
commit
|
commitdiff
|
tree
2011-03-15
Jon
a
th
a
n "D
u
ke"
.
.
.
Fix sy
n
tax
e
rror in organism controller test
commit
|
commitdiff
|
tree
2011-03-11
Jonatha
n
"
D
uke"
.
.
.
Make the advanced ch
e
c
kbox on stock
search final
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
J
onathan "
D
uke"
.
.
.
Use the
ba
r
el
y
-
do
c
u
me
n
ted
co
n
tainer_attributes in Form
F
u
commit
|
commitdiff
|
tree
2011-03-10
Jonathan
"
Duke"
.
.
.
T
e
ll FormFu t
o
add CSS classes to c
e
r
t
a
i
n advanced
.
.
.
commit
|
commitdiff
|
tree
2011-03-02
N
a
ama Menda
added printing phen
o
t
ype data
commit
|
commitdiff
|
tree
2011-03-02
Naam
a
Menda
com
p
o
n
ent
f
or d
i
splaying phenotype da
t
a
commit
|
commitdiff
|
tree
2011-02-28
J
onathan "Du
k
e"
.
.
.
perltidy on assing_owne
r
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Jon
a
than "Duke"
.
.
.
Cle
a
n up cruft in as
s
ig
n
_
o
wner
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
fixed search by edito
r
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
e
n
da
Rev
e
rt "
a
dded und
e
f option
t
o
a
llele
mode of
i
nhe
r
itance"
commit
|
commitdiff
|
tree
2011-02-28
Naama Mend
a
no need f
o
r person obje
c
t
i
n the locus
a
jax
t
est, since
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
testing if the alle
l
e section is pr
i
nte
d
corr
e
ctly
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama M
e
n
d
a
t
e
st for stoc
k
ajax assoc
i
ate_locus functi
o
n
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
end
a
inva
l
id st
o
ck
or allele id error
is now sent
for the
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
t
e
s
t for people aja
x
controlle
r
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
test for locus
ajax controller
commit
|
commitdiff
|
tree
2011-02-28
R
o
bert Buels
add a f
o
rm-submitted
v
ar to baby WWW::Mechanize tests
commit
|
commitdiff
|
tree
2011-02-28
Robe
r
t Bu
e
ls
remove tab chars from stock search
.
mas
commit
|
commitdiff
|
tree
2011-02-28
Naama Me
n
da
tr
y
ing to get t
e
h
stock_s
e
a
rch_form to s
u
b
m
i
t
in the
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
trying to fix the
s
tock sear
c
h test
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
tes
t
i
n
g search stock by editor
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
added something to stockprop_GET
commit
|
commitdiff
|
tree
2011-02-28
Naama Mend
a
added check if
user is logged
in wi
t
h the correct privileg
e
s
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma Menda
type
_
id was am
b
iguous
.
exists in stock
a
nd s
t
ock
p
rop
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
add
e
d se
a
r
c
h
s
tock by editor
+ autocompletion
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
wro
t
e form
.
mas pa
r
a
m
eters more readable
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma Menda
fixed
link for sub
m
itting
n
ew stock,
and added option
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
f
ixed link
to stoc
k
page
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
added sear
c
h stoc
k
by
e
d
itor name, stock object
a
nd
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama
Me
n
da
do not
p
rint allele tabl
e
heade
r
s if no
alleles ar
e
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
fixed stock
link
t
o
c
u
rrent url
commit
|
commitdiff
|
tree
2011-02-28
N
aama Menda
added an
A
JAX
REST contro
l
ler for
s
gn peo
p
l
e
.
C
u
rren
t
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma
M
en
d
a
moved
a
llele se
c
tion to a javascript div
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
enda
c
hecking user privileges before
c
reating ne
w
stockprop
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
fixing the associate locus functionality on the st
o
ck
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Menda
documentation
f
or j
a
va
s
crip
t
form object
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
loading script for
s
o
lca
p
snp
genotypes
commit
|
commitdiff
|
tree
2011-02-28
N
a
a
m
a M
e
nda
a
dded link to stock own
e
rs
commit
|
commitdiff
|
tree
2011-02-28
N
a
am
a
Menda
added
function for
a
ssociating
loci
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Menda
added
form for browsing
l
oci to be associated with
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
M
enda
removed
s
ome perl code from
al
l
ele comp
o
n
e
nt
commit
|
commitdiff
|
tree
2011-02-28
N
aama
M
enda
a
d
d_publication
w
or
k
s
n
o
w for stocks
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama Men
d
a
db
p
atch
f
or movin
g
the
s
tock
publ
i
c
ations
to the righ
t
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
aa
m
a
Men
d
a
added a lin
k
ed l
o
ci section
.
Need to add the js
f
orm
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Men
d
a
p
r
i
n
ting some st
o
ck
p
roperties
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama Menda
added more info + synonym l
i
st to
the stock page
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
m
o
v
ed the phenotype search tab to point t
o
n
e
w st
o
ck
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
mo
v
ed t
h
e
stock sear
c
h form to
a mas
o
n componen
t
commit
|
commitdiff
|
tree
2011-02-04
Jo
n
athan "Duke"
.
.
.
Moder
n
i
z
e and u
n
cru
f
tify the cview index
.
m
a
s
a
bit
commit
|
commitdiff
|
tree
2011-02-04
Jona
t
han "Duke"
.
.
.
Add s
o
me kling
o
n s
e
ns
i
b
il
i
t
y t
o
Secr
e
tom code and
cle
a
n
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan
"Duke"
.
.
.
Remove cruft fr
o
m cview index
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"Duke"
.
.
.
Refactor Organism controller te
s
ts a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan
"Duk
e
"
.
.
.
Prop
e
r
ly ski
p
ITAG
r
eleas
e
tests wh
e
n required data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
J
onathan
"Du
k
e"
.
.
.
Add t/data
t
o
.
gitignore
commit
|
commitdiff
|
tree
2011-02-04
J
onathan "Duke"
.
.
.
Prop
e
rly warn the exit code
if something f
a
ils in SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jon
a
th
a
n "Du
k
e"
.
.
.
Perltidy on t/phenome
/
qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jo
n
a
tha
n
"Duke"
.
.
.
Convert bulk tests to use SGN::T
e
st::WWW
:
:Mecha
n
ize
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
M
ake
SG
N
::
B
uild report
b
e
tte
r
errors when checking
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Du
k
e"
.
.
.
Move
SGN
:
:View::Email::ErrorEmail tests
t
o a nice
r
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
J
o
na
t
han "
D
uke"
.
.
.
Skip so
m
e
Q
TL test
s
if the heatmap is not
p
resent,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Make SGN::
V
iew::Sto
c
k
g
enerate cvterm links from c
v
ter
m
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Ski
p
some tes
t
s
if memb
e
r_s
e
arch_form is not av
a
ilabl
e
commit
|
commitdiff
|
tree
2011-01-31
Jonathan
"Duke"
.
.
.
Add some d
i
agnositcs and a
te
s
t f
o
r
SGN::Controll
e
r
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "
D
u
k
e"
.
.
.
Sk
i
p some genomic clone test
s
i
f
the relevant form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonath
a
n "Duke"
.
.
.
G
i
ve Bio::SecreTary::TMpred modern klingon-lik
e
powers
commit
|
commitdiff
|
tree
2011-01-31
Jon
a
than "Du
k
e"
.
.
.
Perltidy on
B
io
:
:SecreTa
r
y::TMpr
e
d
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "
D
uke"
.
.
.
Cac
h
e the db when l
o
o
k
ing up feature_cvterms an
d
prevent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonath
a
n "Du
k
e"
.
.
.
u
p
date
.
gitignore
commit
|
commitdiff
|
tree
2011-01-28
Jonath
a
n "Duke"
.
.
.
Move SGN::View::Em
a
il
t
est
s
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Pre
t
ti
f
y
S
GN::Cont
r
o
l
ler
:
:Stock
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Make som
e
t
r
iv
i
a
l
changes to t
r
i
gger jitterbu
g
commit
|
commitdiff
|
tree
2011-01-26
J
onath
a
n "Duke"
.
.
.
Merge b
r
a
n
ch 'topic/contact'
commit
|
commitdiff
|
tree
2011-01-26
Jonat
h
an "Duke"
.
.
.
G
e
t us
e
r
e
mail co
r
r
e
c
tly
commit
|
commitdiff
|
tree
2011-01-26
Jonatha
n
"
D
uke
"
.
.
.
Modernize the Con
t
a
c
t
C
o
ntrol
l
er
commit
|
commitdiff
|
tree
2011-01-26
Jonat
h
an "Du
k
e"
.
.
.
Perltidy on locus
_
d
isplay
.
p
l
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duke"
.
.
.
Refactor
some SGN::Authenti
c
ation::* cod
e
commit
|
commitdiff
|
tree
2011-01-24
Jonathan "D
u
ke"
.
.
.
Use SGN::View::Email ins
t
ead of the deprecat
e
d CXGN
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
J
onathan "Duk
e
"
.
.
.
Remo
v
e
/tools/contact
.
pl
a
nd
a
ll re
f
erences to it,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
J
o
n
athan "Du
k
e"
.
.
.
Modernize c
o
sii_
s
ubmission
commit
|
commitdiff
|
tree
next