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Add a component to render feature links
2010-06-18
Duke
Leto
Add a component
t
o render
f
eature links
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Make
m
ax in-line sequence length 30
kilobases not ki
l
obytes
commit
|
commitdiff
|
tree
2010-06-18
Duke
L
e
to
Provide FASTA
d
o
w
nl
o
ad lin
k
for
s
eque
n
ces
>
30
k
ilobase
s
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Fix bug in feature
p
a
r
am par
s
ing and add s
c
ript t
o
.
.
.
commit
|
commitdiff
|
tree
2010-06-18
D
uke L
e
to
Allo
w
searching
by featu
r
e_id
commit
|
commitdiff
|
tree
2010-06-18
D
u
ke Leto
wi
p
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Pass along
c
hi
l
d and parent features
commit
|
commitdiff
|
tree
2010-06-18
Duk
e
Leto
Include javascript libs
commit
|
commitdiff
|
tree
2010-06-18
Duke
L
eto
Up th
e
version we requir
e
of Bi
o
::Chado::Schema in
.
.
.
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Some fea
t
ures do not have dbxr
e
fs
commit
|
commitdiff
|
tree
2010-06-18
Robert Buels
adde
d
Moose
X
::D
e
cl
a
re as Build
.
PL dep
commit
|
commitdiff
|
tree
2010-06-18
Duke Leto
Recrea
t
ed featu
r
e branch
f
rom cor
r
upte
d
git repo
commit
|
commitdiff
|
tree
2010-06-16
Duke
L
eto
Get
r
id of some wa
r
n
ings
i
n g
e
ne_family_
i
nfo
.
mas
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Properly skip some valida
t
ion tests and ma
k
e
.
/Build
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duke
Leto
Make a te
s
t fi
l
e
for
the QTL analysis page
t
h
at ski
p
s
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Refactor valid
a
tion of u
r
ls in
t
o a mod
u
l
e
,
SGN::Test
commit
|
commitdiff
|
tree
2010-06-16
Duke Let
o
Remov
e
AUTO_URLS
f
eatur
e
f
rom valid
a
te_all
.
t, which
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Duke Let
o
Cl
e
an up validate_al
l
.
t som
e
more
and
r
emove dead code
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Cl
e
anup t/valida
t
e_all
.
t
commit
|
commitdiff
|
tree
2010-06-16
D
uke Leto
Add b
l
ib/*
t
o
.
giti
g
nore
commit
|
commitdiff
|
tree
2010-06-16
Duke Le
t
o
Re-en
a
ble the use
o
f
.
/Build test
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Fix the QT
L
t
est
commit
|
commitdiff
|
tree
2010-06-16
Duke Leto
Add
a
b
asic test for qtl
.
pl
commit
|
commitdiff
|
tree
2010-06-16
Du
k
e Leto
Check for pop_
i
d in qtl
.
pl and throw an erro
r
i
f not
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke Le
t
o
Conver
t
a 2
-
arg open
in SGN::Co
n
tr
o
l
ler::Clone::Genomi
c
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
Clean u
p
CX
G
N::Cview::Ch
r
omosome::ITAG, get rid of
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
D
uke Let
o
C
o
n
vert to a 3-arg open with a better error message
.
.
.
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
C
o
nvert 2-arg open to 3-arg in CXGN::Transcript::DrawConti
g
Al
i
gn
commit
|
commitdiff
|
tree
2010-06-11
D
uke Leto
Convert 2-arg open'
s
in CXGN::Gene
f
amily
to sl
u
rp
commit
|
commitdiff
|
tree
2010-06-11
Duke
Leto
C
l
ean up SGN::Image and convert a
2
-arg open to 3-arg
commit
|
commitdiff
|
tree
2010-06-11
Duke Leto
Get rid of 2
-
arg open in CXGN
:
:Bul
k
commit
|
commitdiff
|
tree
2010-06-10
Du
k
e Leto
C
onvert a 2-arg o
p
en to 3-arg with b
a
s
i
c error handling
commit
|
commitdiff
|
tree
2010-06-10
Duke Leto
Improve muscle binary d
e
tection
commit
|
commitdiff
|
tree
2010-06-09
Du
k
e Let
o
Add some more align
_
view
e
r
test
s
, whi
c
h depend
o
n the
.
.
.
commit
|
commitdiff
|
tree
2010-06-09
Duke Leto
Repl
a
c
e
another instance
o
f op
e
n w
i
th
slurp i
n
align_viewer
commit
|
commitdiff
|
tree
2010-06-09
Duke Leto
Add a test for the basi
c
alignment example
commit
|
commitdiff
|
tree
2010-06-09
D
u
k
e
Leto
U
se File
:
:Slurp instead of open()
commit
|
commitdiff
|
tree
2010-06-08
Duke Let
o
Fix a
typo in the P
O
D of t/tools/align_viewer
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
M
o
re tests f
o
r align_v
i
e
w
e
r
an
d
a
d
d Test::
C
l
ass as
.
.
.
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Add tests for valid input to
align_vi
e
w
er
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Refa
c
tor g
e
t_arguments call
commit
|
commitdiff
|
tree
2010-06-08
Duke Le
t
o
Ad
d
bas
i
c tests for align_viewer
commit
|
commitdiff
|
tree
2010-06-08
Duke
Leto
Fix incorrect death message in t/bu
l
k
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Realign a
n
d cle
a
n
up validate_all
.
t
commit
|
commitdiff
|
tree
2010-06-08
Duke Leto
Fixe
d
l
i
nk
to ja
p
an
.
pl,
c
loses #998
commit
|
commitdiff
|
tree
2010-05-27
Duke Leto
Onl
y
l
o
ad CXGN
.
Ef
f
ects once on the
u
nigene_bu
i
ld detail
.
.
.
commit
|
commitdiff
|
tree
2010-05-27
Duke
L
eto
Only lo
a
d
J
S libs once
in unige
n
e_detai
l
.
m
a
s
commit
|
commitdiff
|
tree
2010-05-24
D
uk
e
L
eto
Remo
v
e
s
om
e
more useless deb
u
g output, but refrai
n
.
.
.
commit
|
commitdiff
|
tree
2010-05-24
D
u
k
e
L
et
o
Clea
n
u
p
some of the Bulk
m
odules
commit
|
commitdiff
|
tree
2010-05-21
Duke Leto
Improve bulk
.
t
and add a
test for unigene_con
v
ert
commit
|
commitdiff
|
tree
2010-05-18
Du
k
e L
e
to
Get rid of dead code and remove
p
rint to STDERR
commit
|
commitdiff
|
tree
2010-05-18
D
uke Leto
Revert 6a9
a
055cc
,
whic
h
accidentally undid a bun
c
h
.
.
.
commit
|
commitdiff
|
tree
2010-05-18
Duke Le
t
o
F
i
x
b
u
l
k
.
t
commit
|
commitdiff
|
tree
2010-05-14
D
u
k
e Leto
Add v
i
m swap files
t
o
.
g
i
tignore
commit
|
commitdiff
|
tree