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add script to download stock attributes based on list of stock names.
2021-12-06
L
uk
a
s Mu
e
ller
Mer
g
e pull request #3
8
67 from solgenomics/vcf-header-fix
commit
|
commitdiff
|
tree
2021-12-03
Lukas Mueller
add more tables to db sta
t
s
section
.
commit
|
commitdiff
|
tree
2021-12-03
Lu
k
a
s
Mueller
re
m
ove cassavabas
e
a
s
the
U
I
.
commit
|
commitdiff
|
tree
2021-12-03
Lukas Mueller
fix test
17
.
commit
|
commitdiff
|
tree
2021-12-03
Lukas Mueller
delete pers
o
n created during test out
s
ide
o
f END sta
n
za
.
commit
|
commitdiff
|
tree
2021-12-03
Lukas Mueller
de
l
ete
p
r
o
j
e
c
t
tha
t
wa
s
created duri
n
g test TrialMe
t
adata
.
t
.
commit
|
commitdiff
|
tree
2021-12-03
Lukas Mu
e
l
l
er
avoi
d
creation of location en
t
ries during t
h
e run
o
f
.
.
.
commit
|
commitdiff
|
tree
2021-12-03
Lukas M
u
eller
add SGN::Tes
t
::Fixture to Br
a
p
i
t
ests to
g
et dbsta
t
s
.
commit
|
commitdiff
|
tree
2021-12-03
L
ukas Mueller
a
d
d db stats b
e
fore an
d
after
tests
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas
M
u
elle
r
add mis
s
ing
validation file
c
hange
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas Mueller
Merge pull
r
equest #3843 from solgenomics/topi
c
/fix_datas
e
t
_
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas
M
ueller
Merge pu
l
l
request #3
8
45 from solgenomic
s
/
topic/multiple_tis
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
L
ukas Mueller
Me
r
ge pull request #3846
from solgenomics/topi
c
/
high_dim_up
l
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas Muell
e
r
M
e
rge pull request #3
8
47 from solgeno
m
i
c
s/gwas-fixe
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas Muell
e
r
Merge pul
l
request
#
3
8
50 from solgenom
i
c
s/t
o
p
ic/g
i
thub
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Luk
a
s Mueller
Merge
pull request #3855
f
ro
m
solgenomics/topic/upgraded_fi
e
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Luk
a
s
Mueller
Merge pull requ
e
st #3859
from
s
olgenomics/topic/met
a
data_
f
il
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas Mueller
Merg
e
pull requ
e
st #3862 from solgenomics/topic/
l
ogin_
d
ialog
.
.
.
commit
|
commitdiff
|
tree
2021-12-02
Lukas
Mu
e
ll
e
r
add legacy_validate function for situatio
n
s that are
.
.
.
commit
|
commitdiff
|
tree
2021-12-01
L
ukas Mueller
M
e
rge branch 'master' into topic/fix_d
o
w
n
lo
a
d
_list_chec
k
commit
|
commitdiff
|
tree
2021-12-01
L
ukas Mueller
should
be r
e
t
urn 1 for valid li
s
t
s
.
commit
|
commitdiff
|
tree
2021-11-25
Lukas Mueller
fix
t
ypo
in va
r
iable na
m
e
.
commit
|
commitdiff
|
tree
2021-11-25
Lukas Mue
l
ler
check if
$
fi
e
l
ds
i
s a has
h
ref with
c
ont
e
nt before proceedi
n
g
.
.
.
commit
|
commitdiff
|
tree
2021-11-23
Lukas Mu
e
ller
fix accession
u
ploa
d
by list
.
commit
|
commitdiff
|
tree
2021-11-23
Lukas Mueller
Merge p
u
ll re
q
ues
t
#38
3
6 fr
o
m solgenomics/topic/upgraded_fi
e
.
.
.
commit
|
commitdiff
|
tree
2021-11-23
Lukas Mu
e
l
l
e
r
mas
o
n/bre
e
der
s
_
t
oolbox/d
o
wnload
.
mas
commit
|
commitdiff
|
tree
2021-11-23
Lukas
M
u
e
lle
r
fix non-inter
a
ctive
r
eturn
valu
e
.
.
.
0 mean
s
passed
.
.
.
commit
|
commitdiff
|
tree
2021-11-22
Luka
s
M
uell
e
r
Merge pull request #3837 f
r
om s
o
l
g
en
o
m
i
c
s
/
t
opic/
t
we
a
k
.
.
.
commit
|
commitdiff
|
tree
2021-11-21
Luk
a
s
Mueller
also f
i
x
line en
d
i
n
gs for the ac
t
ual parse step
.
commit
|
commitdiff
|
tree
2021-11-21
Lukas
M
ueller
re
m
ove debug
info
.
commit
|
commitdiff
|
tree
2021-11-21
L
ukas Mueller
rem
o
ve
\r cha
r
acters from l
i
ne endings of
fieldbo
o
k
.
.
.
commit
|
commitdiff
|
tree
2021-11-19
Luka
s
Muell
e
r
re
m
ov
e
stray parenthesis to p
r
ev
e
nt this
d
b
pat
c
h from
.
.
.
commit
|
commitdiff
|
tree
2021-11-18
Lukas Muelle
r
up
d
ate document
a
tion wit
h
seedl
o
t deletion
.
commit
|
commitdiff
|
tree
2021-11-18
L
ukas Muel
l
er
fix co
n
flict
commit
|
commitdiff
|
tree
2021-11-18
Lukas Mue
l
ler
a
d
d missing mason
file
.
commit
|
commitdiff
|
tree
2021-11-18
L
u
kas Muelle
r
sim
p
l
e
test
f
or se
e
dlot deletion
u
sing l
i
sts
.
commit
|
commitdiff
|
tree
2021-11-18
Lukas M
u
e
ller
Merge pu
l
l
r
eq
u
est #3821 fr
o
m s
o
l
g
enomics/topic
/
fi
x
_tr
i
al_up
.
.
.
commit
|
commitdiff
|
tree
2021-11-18
Luka
s
Mueller
a
d
d budding t
e
st for delete seedlots w
i
t
h list
.
commit
|
commitdiff
|
tree
2021-11-18
Lukas Mu
e
ller
fix an issue with acce
s
sion uplo
a
ding
.
commit
|
commitdiff
|
tree
2021-11-18
Lukas Mueller
a
d
d seedlo
t
list deletion test
.
commit
|
commitdiff
|
tree
2021-11-17
Lukas Mueller
move
the se
e
d
lot deletion co
d
e to the CXGN::S
t
ock:
.
.
.
commit
|
commitdiff
|
tree
2021-11-16
Lukas Mueller
Merg
e
pull request #3818 from
s
olg
e
nomics/topic/s
a
m
pling_tr
i
a
l
commit
|
commitdiff
|
tree
2021-11-16
Lu
k
as
Mueller
Merg
e
branch 'master'
i
nto topic/seedlot_deletion
commit
|
commitdiff
|
tree
2021-11-16
Lu
k
as Muel
l
er
ad
d
a se
e
dlot deletion func
t
i
o
n ba
s
ed on a
l
ist
.
commit
|
commitdiff
|
tree
2021-11-16
Lukas
M
ueller
Merge pull request #3817 from s
o
lgenom
i
cs/t
o
pic/debug
commit
|
commitdiff
|
tree
2021-11-15
Lukas Mueller
add seedlot deletion based on l
i
sts
.
commit
|
commitdiff
|
tree
2021-11-15
Luk
a
s Mu
e
ll
e
r
Merge
pull reque
s
t #3810 from solgenomics/topic/gi
t
hub
.
.
.
commit
|
commitdiff
|
tree
2021-11-15
Lukas Mu
e
ller
Merge pu
l
l
requ
e
s
t
#381
3
fro
m
sol
g
e
n
omics
/
topic/simple
_
image
.
.
.
commit
|
commitdiff
|
tree
2021-11-12
Lukas Mu
e
ller
Merge pull req
u
e
s
t
#3812 from
s
olgen
o
m
ics/topic/markerset
commit
|
commitdiff
|
tree
2021-11-11
L
u
kas Mueller
Merge
p
u
ll requ
e
st #3807 fr
o
m
solgenomics/
t
o
pic/refactor_syn
.
.
.
commit
|
commitdiff
|
tree
2021-11-11
Lukas M
u
eller
remov
e
deb
u
g messages
and twe
a
k
s
.
commit
|
commitdiff
|
tree
2021-11-10
Lu
k
as
Mueller
f
i
x dataset
a
nd solgwas i
s
sue fo
r
g
e
n
o
typ
e
file downlo
a
d
.
commit
|
commitdiff
|
tree
2021-11-08
Lukas Mueller
M
e
rge pull
request #3794 fro
m
s
o
l
genomics/
g
i
thub-act
i
o
n
s
commit
|
commitdiff
|
tree
2021-11-08
Lukas Muell
e
r
Merge pull request #3798 from TriticeaeToolbox
/
topic
.
.
.
commit
|
commitdiff
|
tree
2021-11-08
Lukas Muel
l
e
r
Merge pull
request #3799 fr
o
m T
r
it
i
ce
a
eToolbox/t
o
pic
.
.
.
commit
|
commitdiff
|
tree
2021-11-05
Luka
s
Mue
l
ler
Merge pull req
u
est #3797 from solge
n
omics/
t
opic/add_search
_
s
.
.
.
commit
|
commitdiff
|
tree
2021-11-02
L
ukas Mueller
Merge p
u
ll request #3785 from
solgenomi
c
s/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2021-11-01
L
ukas
M
ueller
Merge pull
r
equest #37
9
1 fr
o
m solgenomics/topic/fix_location
.
.
.
commit
|
commitdiff
|
tree
2021-11-01
Lukas Muel
l
er
f
ix parsing of locaton json
.
commit
|
commitdiff
|
tree
2021-11-01
Luka
s
M
u
elle
r
M
erge pull req
u
est #378
6
f
rom solg
e
nomics
/
gith
u
b
-ac
t
ions
commit
|
commitdiff
|
tree
2021-10-31
L
ukas Mue
l
le
r
produce clea
n
o
ut
p
ut on STDOUT
.
commit
|
commitdiff
|
tree
2021-10-28
Lukas Mueller
Merge pull requ
e
st #3
7
81
from solgeno
m
ics/gwas-f
i
xes
commit
|
commitdiff
|
tree
2021-10-28
Lu
k
as Mue
l
le
r
M
erge pull request #3784
from solgenomics/topic/more_te
s
t_f
i
xes2
commit
|
commitdiff
|
tree
2021-10-26
Lukas Mueller
dump mail has
h
for easie
r
debu
g
ging
.
commit
|
commitdiff
|
tree
2021-10-26
L
ukas Mueller
remove authorization p
a
r
ameter from
U
R
L,
not required
.
.
.
commit
|
commitdiff
|
tree
2021-10-26
Luk
a
s Muell
e
r
m
o
v
e
a
uthorization token to the he
a
der as ne
w
ly r
e
quired
.
.
.
commit
|
commitdiff
|
tree
2021-10-26
Lukas M
u
el
l
er
fix
=pod
entry so that pod
.
t
t
est w
o
rks
.
commit
|
commitdiff
|
tree
2021-10-26
Lukas
Mueller
tweak t/
u
nit/pod/pod
.
t test
commit
|
commitdiff
|
tree
2021-10-26
Luk
a
s Mueller
fix t/uni
t
/pod
/
pod
.
t t
e
st
commit
|
commitdiff
|
tree
2021-10-26
Lukas Mueller
Mer
g
e
branch 'master'
i
nto topi
c
/more_test_fix
e
s2
commit
|
commitdiff
|
tree
2021-10-24
Lukas Mu
e
ller
fix Iden
t
i
ier
G
en
e
ration
.
t test; make it run order independent
.
commit
|
commitdiff
|
tree
2021-10-23
Lukas Mu
e
l
l
e
r
fix Tr
i
alMet
a
data
.
t te
s
t
.
commit
|
commitdiff
|
tree
2021-10-22
Lukas Mu
e
ller
work
in pr
o
gress on
T
rial
M
etadata
.
t
.
Name tests
.
Try
.
.
.
commit
|
commitdiff
|
tree
2021-10-22
L
ukas Mueller
M
erge
p
u
ll request #3775 f
r
om solgenomics/to
p
i
c
/simp
l
e_i
m
age
.
.
.
commit
|
commitdiff
|
tree
2021-10-22
Lukas M
u
eller
Merge pu
l
l request #3778 from so
l
genomics/topic/
f
ix_pheno_
d
o
.
.
.
commit
|
commitdiff
|
tree
2021-10-22
Lukas Muel
l
er
M
e
rge pu
l
l r
e
q
uest
#
3
779 from solgenomics/topic/cr
o
s
s_downlo
.
.
.
commit
|
commitdiff
|
tree
2021-10-21
Lukas
M
u
eller
Merge pull request #3774 from solgenomics/topic/solg
s
.
.
.
commit
|
commitdiff
|
tree
2021-10-21
L
uk
a
s Mueller
Merge pull
request
#
3776 from solgenomics/t
e
st/t
r
ial_
e
n
try_n
.
.
.
commit
|
commitdiff
|
tree
2021-10-19
Lukas
Muell
e
r
Mer
g
e
b
ranch
'ma
s
te
r
'
into topic/
m
o
r
e_
t
est_fixes2
commit
|
commitdiff
|
tree
2021-10-19
L
u
ka
s
Mu
e
l
l
er
Merg
e
p
ull request #3773 from solgenomics/topic/
b
r
a
p
i_fixes
commit
|
commitdiff
|
tree
2021-10-19
Luka
s
Muel
l
er
fix search
.
t
me
c
h
test
.
U
s
e
r int
e
r
f
a
ce was slightly
.
.
.
commit
|
commitdiff
|
tree
2021-10-18
Lu
k
as Mueller
M
erge pull
r
equest #3757 from sol
g
eno
m
ics/topic/
m
anagement_f
.
.
.
commit
|
commitdiff
|
tree
2021-10-18
Lukas
M
u
eller
ma
k
e the
a
ssociated
t
raits test independ
e
nt of pr
e
viously
.
.
.
commit
|
commitdiff
|
tree
2021-10-18
Lukas M
u
eller
f
i
x t/unit_me
c
h/AJAX/BreedersTo
o
lbox/Loca
t
ions
.
t
test
.
.
.
commit
|
commitdiff
|
tree
2021-10-17
Lukas
M
ueller
Remove
checks of spe
c
ific db
ids from the test
;
make
.
.
.
commit
|
commitdiff
|
tree
2021-10-17
Lukas
M
u
eller
Ouch! The database
n
ee
d
s UTF8 e
n
coding, not ASCII!!!!
commit
|
commitdiff
|
tree
2021-10-17
Luk
a
s
Mueller
fix
c
onflict
commit
|
commitdiff
|
tree
2021-10-17
Luka
s
Mueller
fix genotype
d
o
wnlo
a
d for older formats
i
n th
e
da
t
a
b
ase
.
.
.
commit
|
commitdiff
|
tree
2021-10-14
Lukas Mue
l
ler
Me
r
ge pull
r
equest #3768 from s
o
lgenom
i
c
s
/topic/fix_
c
hebi_on
.
.
.
commit
|
commitdiff
|
tree
2021-10-14
Luka
s
M
ue
l
le
r
Merge p
u
ll request #3770 from
solgenom
i
cs/
t
opic/entry_number
.
.
.
commit
|
commitdiff
|
tree
2021-10-14
Lukas
Muell
e
r
Merge pull request #3771
f
r
o
m sol
g
enomi
c
s/topic/intercross_
c
.
.
.
commit
|
commitdiff
|
tree
2021-10-13
Lu
k
as Mueller
add chro
m
and
p
os back into download wh
e
n
i
t is n
o
t
.
.
.
commit
|
commitdiff
|
tree
2021-10-11
L
ukas Mueller
Merge branch 'master'
into topic/fix_g
e
notyp
e
_download
commit
|
commitdiff
|
tree
2021-10-11
Luka
s
Muell
e
r
if old storage scheme is used, get
CHROM and POS values
.
.
.
commit
|
commitdiff
|
tree
2021-10-11
L
u
kas
M
u
e
ller
comment
o
ut d
e
bu
g
ging code
.
commit
|
commitdiff
|
tree
2021-10-11
L
ukas Mue
l
ler
Merge pull request #3561 from solgenomics/topic/bra
p
i
_oauth
commit
|
commitdiff
|
tree
2021-10-10
Lukas M
u
eller
Mer
g
e
p
ull request #3766 from so
l
ge
n
omi
c
s/to
p
ic/new_stock_search
commit
|
commitdiff
|
tree
2021-10-08
Luka
s
Muel
l
er
ad
j
us
t
r
e
s
ponse wh
e
n t
e
st is run individually
.
commit
|
commitdiff
|
tree
2021-10-07
Lukas Mueller
r
ename Identifie
r
G
e
nera
t
ion
.
t t
e
st t
o
remove typo
.
commit
|
commitdiff
|
tree
2021-10-07
Lukas M
u
eller
fix t/unit_mech
/
AJAX/I
n
detifierGeneration
.
t
commit
|
commitdiff
|
tree
next