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added link to stock owners
2011-02-28
Naama Menda
a
dde
d
link
t
o stoc
k
owners
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
a
d
d
e
d
fu
n
ctio
n
for associating loci
commit
|
commitdiff
|
tree
2011-02-28
N
aama Menda
ad
d
ed
form for browsing
l
oci to be
a
ssociated wit
h
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
a
am
a
Menda
r
e
moved some perl c
o
de
from allele component
commit
|
commitdiff
|
tree
2011-02-28
N
aama Menda
add_
p
u
bl
i
cati
o
n works
n
o
w for
stocks
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
db patch for movi
n
g t
h
e
s
tock publications
to the right
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
added
a l
i
nked lo
c
i
s
ectio
n
.
Need t
o
add the js form
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
e
n
d
a
printing some stock proper
t
ies
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma Menda
added more
i
nfo + synonym list t
o
the stock page
.
commit
|
commitdiff
|
tree
2011-02-28
Naama M
e
nda
moved the phenot
y
p
e search tab
t
o point t
o
n
e
w stock
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma
Menda
moved the stock search form to a mason
c
o
mponent
commit
|
commitdiff
|
tree
2011-02-04
Jonat
h
a
n "Duke
"
.
.
.
Mode
r
n
ize a
n
d uncru
f
ti
f
y
the
c
view index
.
ma
s
a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Add some klingon sensibility
to
Secretom code and cle
a
n
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
J
o
nathan "Duk
e
"
.
.
.
Remove cruft
f
r
om cview index
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonathan
"Du
k
e"
.
.
.
R
e
fa
c
tor
Organi
s
m con
t
roller tests a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"D
u
ke"
.
.
.
Properly s
k
ip IT
A
G release tests when
r
equire
d
data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonat
h
a
n
"Duke"
.
.
.
Add t
/
data to
.
gitigno
r
e
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
P
r
o
p
erly warn the exit
code if something f
a
ils in SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jonathan "Duk
e
"
.
.
.
Perlti
d
y
on
t/phenome/qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jonathan
"
Duk
e
"
.
.
.
Conv
e
rt b
u
lk tests to use SGN::Tes
t
::W
W
W:
:
Mechanize
commit
|
commitdiff
|
tree
2011-02-01
J
o
nathan "Duke"
.
.
.
Make SGN::B
u
ild
r
eport bett
e
r
errors whe
n
c
h
ecking
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Mov
e
SGN
:
:V
i
ew::E
m
ail::ErrorEmail tests to a nicer
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jon
a
than "Duke"
.
.
.
Skip s
o
me QTL tests if the heatmap is not present,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
J
o
natha
n
"Duk
e
"
.
.
.
Mak
e
SGN::View
:
:Stock gener
a
te cvterm links from cvterm
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jon
a
th
a
n "Duke"
.
.
.
Skip some te
s
ts if mem
b
e
r_search_form is not
av
a
ilable
commit
|
commitdiff
|
tree
2011-01-31
J
onath
a
n
"D
u
ke
"
.
.
.
Add some diagnos
i
t
c
s and a test for
S
GN::Controller
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonath
a
n
"
Duke"
.
.
.
Skip some genomic clone
t
est
s
if th
e
relevant form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "
D
uke"
.
.
.
Give Bi
o
::SecreTary::TMpred modern k
l
i
n
gon-like powers
commit
|
commitdiff
|
tree
2011-01-31
Jonath
a
n "Du
k
e"
.
.
.
Perltidy on
B
io::Secr
e
Ta
r
y::TMpred
commit
|
commitdiff
|
tree
2011-01-31
Jonathan
"Duke"
.
.
.
Cache the db when looki
n
g up fe
a
ture
_
cvterms and
p
revent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
update
.
gitignore
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Move SG
N
::Vi
e
w
::E
m
ail tests
commit
|
commitdiff
|
tree
2011-01-28
J
onathan "Duke"
.
.
.
Prettify SGN::C
o
ntrolle
r
::Sto
c
k
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Make s
o
me tri
v
i
al
c
hanges to trigger jit
t
erbu
g
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "
D
uke"
.
.
.
Merge
b
r
anch
'
topic/
c
ontact'
commit
|
commitdiff
|
tree
2011-01-26
J
o
nathan "Duke"
.
.
.
Get use
r
email c
o
rrectly
commit
|
commitdiff
|
tree
2011-01-26
J
o
nathan
"
Duk
e
"
.
.
.
M
o
dernize the Con
t
act
C
o
ntroller
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duk
e
"
.
.
.
P
erltidy on locus_display
.
pl
commit
|
commitdiff
|
tree
2011-01-26
J
o
nat
h
a
n
"Duke"
.
.
.
Refactor some S
G
N
:
:Authentication
:
:* code
commit
|
commitdiff
|
tree
2011-01-24
Jo
n
athan
"
D
uke"
.
.
.
Use SGN::View::
E
m
ail instead of
t
he d
e
precated CXGN
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonath
a
n "Duke"
.
.
.
Remove /too
l
s/contact
.
pl an
d
all reference
s
to it,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Du
k
e"
.
.
.
Mo
d
ern
i
z
e cosii_submission
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
p
e
r
ltidy on t/integration/contact
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jon
a
t
h
an "D
u
ke"
.
.
.
Perl
t
idy t/cview/map
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "Duke"
.
.
.
Fix SGN::Bui
l
d::Cha
n
gel
o
g tests
commit
|
commitdiff
|
tree
2011-01-20
Jonathan
"
Duke"
.
.
.
Fix sequence API tests
commit
|
commitdiff
|
tree
2011-01-13
Jonatha
n
"Duke"
.
.
.
Fix e
r
ror co
u
n
t
and
remove some commented-ou
t
c
ode
commit
|
commitdiff
|
tree
2011-01-13
ray
R
e
q
uire
m
ents fixed
commit
|
commitdiff
|
tree
2011-01-13
ray
Updates to Cont
a
c
t
page
.
commit
|
commitdiff
|
tree
2011-01-13
ray
U
p
dat
e
s to Contact page
.
commit
|
commitdiff
|
tree
2011-01-13
rayleigh
Contact page
.
commit
|
commitdiff
|
tree
2011-01-13
r
a
y
Forgot to add a mason comp
o
n
e
nt
n
eeded
.
commit
|
commitdiff
|
tree
2011-01-13
ray
Another
u
pdate of test
commit
|
commitdiff
|
tree
2011-01-13
ra
y
An
o
ther up
d
ate of test
commit
|
commitdiff
|
tree
2011-01-13
r
ay
N
e
w Contact Pa
g
e-Upd
a
ted test
agai
n
commit
|
commitdiff
|
tree
2011-01-13
ray
New Contact
P
a
ge-Updated
test a
g
ain
commit
|
commitdiff
|
tree
2011-01-13
r
ay
New
C
ontact Page-Up
d
ated test agai
n
commit
|
commitdiff
|
tree
2011-01-13
ra
y
N
e
w Co
n
tact
P
age
-
Updated test aga
i
n
commit
|
commitdiff
|
tree
2011-01-13
r
a
y
New Contact Page-Updated test again
commit
|
commitdiff
|
tree
2011-01-13
r
a
y
New
C
ontact Pag
e
-Updated test
ag
a
in
commit
|
commitdiff
|
tree
2011-01-13
r
ay
New
C
o
ntac
t
P
a
ge-Updated test a
g
ain
commit
|
commitdiff
|
tree
2011-01-13
ray
New Contact P
a
ge-Updated test
commit
|
commitdiff
|
tree
2011-01-13
ray
New Con
t
a
c
t Page
commit
|
commitdiff
|
tree
2010-12-09
J
o
nathan
"
Duke
"
.
.
.
Ign
o
re
s
ome temp data file
s
commit
|
commitdiff
|
tree
2010-12-07
Jonath
a
n "Duke"
.
.
.
Add
a
t
r
a
i
t_list
.
pl v
a
lidation test
commit
|
commitdiff
|
tree
2010-12-07
Jonathan "Duke"
.
.
.
Add some mor
e
Q
TL searc
h
validation te
s
ts
commit
|
commitdiff
|
tree
2010-12-07
Jonat
h
a
n
"Duke"
.
.
.
Create a new
t
est file for searc
h
validation tests
.
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
cvterms_sea
r
ch
.
pl is rena
m
ed qtl_se
a
rch
.
pl
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
renam
e
d cvterms_sear
c
h
.
pl to qtl_se
a
rch
.
p
l
.
.
commit
|
commitdiff
|
tree
2010-12-07
is
a
ak
nam
i
ng qtl, ph
e
noty
p
e tabs d
i
fferently
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
text editing and function name changes
t
o describe
.
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
trait
s
with
q
tls only are s
h
own; now, u
n
ique traits
.
.
.
commit
|
commitdiff
|
tree
2010-12-01
Jonathan "
D
uke"
.
.
.
Add ba
s
ic te
s
t for
/
tools/wait
.
pl
commit
|
commitdiff
|
tree
2010-12-01
Jonatha
n
"
D
uk
e
"
.
.
.
Bring /
t
oo
l
s/wait
.
pl in
t
o the modern age
commit
|
commitdiff
|
tree
2010-12-01
Jonathan
"
D
u
ke"
.
.
.
Add a test
for organism_link
commit
|
commitdiff
|
tree
2010-12-01
Jonatha
n
"Duke
"
.
.
.
Add a test for cv
t
erm
_
link
commit
|
commitdiff
|
tree
2010-12-01
Jo
n
athan
"Duke"
.
.
.
Make feature
l
inks use
id's, since names
a
ren'
t
uniq
u
e
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Prefetch s
o
m
e
c
vterms in the exon result set
commit
|
commitdiff
|
tree
2010-11-30
Jonathan
"
Duke"
.
.
.
Pass along featurelocs
in general
feature pa
g
es too
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Use a onc
e
block in
r
e
l
a
t
ed features c
o
mponent
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
Pro
p
erly it
e
rate ov
e
r fe
a
turelo
c
s when looking up
s
i
te
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jona
t
han "Duke"
.
.
.
Cache
featurel
o
cs in the Catalyst stash
commit
|
commitdiff
|
tree
2010-11-30
Jonathan
"
Duke"
.
.
.
Prefetch cvterm
s
when requesting genes
.
Ge
n
e pag
e
s
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duke"
.
.
.
P
r
e
f
etch some featureloc_features
commit
|
commitdiff
|
tree
2010-11-30
Jona
t
han
"Duke"
.
.
.
Make gene
.
mas more readable and rem
o
ve cruft
commit
|
commitdiff
|
tree
2010-11-30
J
o
nathan "Duke"
.
.
.
Gi
v
e
a more
useful error me
s
sa
g
e when
the R version
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
Jo
n
a
than
"
Duk
e
"
.
.
.
Cache featurel
o
cs in
a few more place
s
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Du
k
e"
.
.
.
Put
m
o
dule use in a once
b
lock on
t
he gene page
commit
|
commitdiff
|
tree
2010-11-30
Jonat
h
an "
D
uke"
.
.
.
Start c
a
ching feat
u
relocs so we don't
r
ecalcu
l
ate
t
h
em
.
.
.
commit
|
commitdiff
|
tree
2010-11-30
J
o
nathan "Duke"
.
.
.
M
a
ke gene
.
mas more read
a
ble and remove cruf
t
commit
|
commitdiff
|
tree
2010-11-30
Jonathan "Duk
e
"
.
.
.
Give
a more u
s
e
f
u
l
e
rror message when
the R v
e
r
s
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Jonathan "Duke"
.
.
.
Get rid of warning in
Build
.
PL when R is not in
s
t
a
lle
d
commit
|
commitdiff
|
tree
2010-11-24
Jonathan
"
D
u
ke
"
.
.
.
U
p
d
a
t
e Phe
n
ome
v
a
l
idation test
s
ince p_marker chan
g
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-11-24
Jonat
h
an "Duke"
.
.
.
I
m
p
rove t
h
e AddUserRol
e
s
d
bpatch slight
l
y
commit
|
commitdiff
|
tree
2010-11-24
Jonathan "Duk
e
"
.
.
.
Move the AddU
s
er
R
oles dbpat
c
h to the
c
o
rr
e
ct director
y
commit
|
commitdiff
|
tree
2010-11-23
Jonathan "Duke
"
.
.
.
Fix bootstrapping probl
e
m
w
ith
Parse::De
b
:
:
Control
commit
|
commitdiff
|
tree
2010-11-23
Jo
n
athan "Duke"
.
.
.
Add a
dep for a sp
e
ci
f
ic
versio
n
o
f version
commit
|
commitdiff
|
tree
2010-11-19
Jon
a
than "Duke"
.
.
.
Fix so
m
e uniqu
e
name/name
b
ug
s
in
s
to
c
k search, ad
d
ed
.
.
.
commit
|
commitdiff
|
tree
2010-11-18
Jo
n
a
t
han "Duke"
.
.
.
Allow creation of test
C
vtermpath objects
commit
|
commitdiff
|
tree
2010-11-18
Jon
a
tha
n
"Duk
e
"
.
.
.
Allow cre
a
tion
of test S
t
ock obje
c
t
s
commit
|
commitdiff
|
tree
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