| 2010-09-05 |
Robert Buels | replaced bare_mason.pl with a bare_mason action in...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | also import toolbar js in the global imports. needed...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | move global JS import from the mason footer into the...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | tweak sol100 wording, per RKL
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | add explicit allows for gbrowse CGI configuration,...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | make symlinks for other gbrowse conf contents when...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | dir creation should succeed even if could not chown...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | organism controller test should pass if no sol100 organisms...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | should die informatively when there is no png for an...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | should die informatively when there is no png for an...
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | add a little debug output for throwing 404s
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | more fixes for bulk line counting
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | bulk display should print header earlier
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | ridiculous to use backticks for counting file lines
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | band-aided idiotic bulk download file naming
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | need globalcontext in bulk download display
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | ajax test should pass with different image dirs
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commit | commitdiff | tree |
| 2010-09-05 |
Robert Buels | disable SGN::View::Feature gbrowse link test for now...
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | CXGN::VHost::Test needs to use SGN::Test also for env...
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | good idea to set your PERL5LIB in your apache conf...
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | fixed sequencer test count
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | fixed blastwatch test count
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | solpeople test count
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commit | commitdiff | tree |
| 2010-09-04 |
Robert Buels | fixed phenome test count
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | moved bac detail page validation into the same script...
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | make SGN::Test connection counting use the right context...
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | 01app test needs to use SGN::Test to get its right...
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | bugfix to unigene image temp path handling
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | make SGN::Test capable of running its validate tests...
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | mech should use Class::MOP to try and load classes...
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commit | commitdiff | tree |
| 2010-09-03 |
Robert Buels | stubbed out CXGN::VHost::Test to just be Catalyst:...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | added POD about when the different test levels are...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | tweak mech logic so that the default level under SGN_TEST_SE...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | delineate test levels in organism controller
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | add checking to kill mech if someone tries to get a...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | tweak mech context, use app class if process, use SGN...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | used new test level functions to divide javascript...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | bugfixes to SGN::Test::WWW::Mechanize
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | added logic to SGN::Test::WWW::Mechanize defining three...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | fixed unigene image tempdir
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | error notify just throws for now, this needs to be...
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commit | commitdiff | tree |
| 2010-09-01 |
Robert Buels | added another unigene detail page to validation
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commit | commitdiff | tree |
| 2010-08-31 |
Robert Buels | added phenotype search to validation
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commit | commitdiff | tree |
| 2010-08-31 |
Robert Buels | no autodie in Files role, some things in there should...
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commit | commitdiff | tree |
| 2010-08-31 |
Robert Buels | need to create our temp_base if it doesn't exist
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | bandaided sigpep finder to not fail with missing temp dir
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | fixed html validation error in sgn pubs
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | fix blastwatch test count
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | updated SGN::Test test for db connection method name...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | moved validate_other.t to validate/other.t, fixed test...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | fixed db handle leak test. to properly test for leaks...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | actually, warning should be printed if debug is set
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | squash database opening warnings
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | cview sgn.t should use a SGN dbh
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | make documents/tempfiles a symlink into the real site...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | GBrowse rendered confs now go in a sane place
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | add support for interpolating the userid and username...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | lazy_build the cache of rendered organism trees
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | need to pass PROJECT_NAME env to scripts too, for CXGN...
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | tweak tempfiles base name again
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | pod correction
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commit | commitdiff | tree |
| 2010-08-30 |
Robert Buels | deleted tempfiles subdir
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | html validation error on sol100 page
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | that is a blastwatch test, not a blast test
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | correct integration/blast.t test count
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | typo
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | can't use only the dsn for connection, some people...
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | SGN::Test::WWW::Mechanize should use the SGN_TEST_SERVER...
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | refactor SGN::Deploy::Apache to force CGI into non...
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | CGI scripts should be printing the result of CGI->new...
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | sol100_autocomplete backend script no longer used
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | bugfix to organism tree page queries
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commit | commitdiff | tree |
| 2010-08-27 |
Robert Buels | coerce errors explicitly to SGN::Exception, cannot...
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | move globally-included js into mason footer
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | rewrite chado/publication display show/hide in jquery...
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | bugfix to bac end link on clone detail page
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | downloaded a clean copy of jquery-ui to fix what i...
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | port html_optional_show to just use jquery-ui accordion
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | now that the new C::V::JavaScript::Minifier::XS is...
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | tweaked format of recommended apache dev conf. local...
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commit | commitdiff | tree |
| 2010-08-26 |
Robert Buels | tweaked formatting of apache2 dev example conf
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commit | commitdiff | tree |
| 2010-08-25 |
Robert Buels | added some POD to SGN::Deploy::Apache
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commit | commitdiff | tree |
| 2010-08-25 |
Robert Buels | on second though, remove post-only restriction on organism...
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commit | commitdiff | tree |
| 2010-08-25 |
Robert Buels | added tree cache flushing to Organism controller
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | move commits into the test scripts that use hard_delete
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | logins will not always redirect back to mysgn
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | workaround for current inability to chain $phylonode...
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | tests for sol100 organism adding
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | new SGN::Test::WWW::Mechanize, an SGN-specific mech...
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | force autocommit to be on for default $c->dbc
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | factored out organism tree graphic display into another...
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | should html-entitize the dev message on error pages
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | turn off borders on images by default
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | formatting tweak
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | test nonexistent-file warning from javascript controller
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | jQuery noConflict was clobbered by 9f8e943f37d1fefd369bc35df...
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | made feature objects not be singletons, simply be cached...
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commit | commitdiff | tree |
| 2010-08-24 |
Robert Buels | tweak javascript debug messages
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