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2022-10-26	Lukas Mueller	tweak input page.	commit \| commitdiff \| tree
2022-10-25	Lukas Mueller	Merge branch 'master' into topic/simsearch_ui	commit \| commitdiff \| tree
2022-10-19	Lukas Mueller	Merge branch 'master' into topic/simsearch_ui	commit \| commitdiff \| tree
2022-10-18	Lukas Mueller	implement simsearch controller, add default for simsearch...	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	handling vector constructs also in secondary check.	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	fix typo in package name for plugin.	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	add list validation plugin for accessions, populations...	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	delete file.	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	Merge branch 'master' into topic/fix_pedigree_upload_for_vectors	commit \| commitdiff \| tree
2022-10-14	Lukas Mueller	add a new plugin that tests for matches to accessions...	commit \| commitdiff \| tree
2022-09-28	Lukas Mueller	factor out a download_genotype_vcf function, needed...	commit \| commitdiff \| tree
2022-09-10	Lukas Mueller	move R-ification code to mixed model object.	commit \| commitdiff \| tree
2022-06-10	Lukas Mueller	tweak mixed model test... not yet passing.	commit \| commitdiff \| tree
2022-06-09	Lukas Mueller	change temp dir name to mixed_models	commit \| commitdiff \| tree
2022-06-07	Lukas Mueller	fix an issue with organism in CXGN::Stock and modify...	commit \| commitdiff \| tree
2022-06-07	Lukas Mueller	Merge branch 'master' into topic/gpcp_tool	commit \| commitdiff \| tree
2022-05-19	Lukas Mueller	fix parsing of models for sommer and reconstruct correctly...	commit \| commitdiff \| tree
2022-05-19	Lukas Mueller	wait a bit before testing presence of files.	commit \| commitdiff \| tree
2022-05-19	Lukas Mueller	remove LFs when reading files.	commit \| commitdiff \| tree
2022-05-19	Lukas Mueller	sommer model now displaying correctly on tool; not...	commit \| commitdiff \| tree
2022-05-16	Lukas Mueller	add shm_size: 2g option to breedbase_db container,...	commit \| commitdiff \| tree
2022-05-16	Lukas Mueller	remove LFs from lines read from file for compatibility...	commit \| commitdiff \| tree
2022-05-16	Lukas Mueller	remove debugging info.	commit \| commitdiff \| tree
2022-05-16	Lukas Mueller	report only distinct values for the string aggregation...	commit \| commitdiff \| tree
2022-05-12	production user	run the correct R script for lme4 or for sommer	commit \| commitdiff \| tree
2022-05-12	production user	implment a step towards generating sommer models.	commit \| commitdiff \| tree
2022-05-12	Lukas Mueller	fix query for stock_synonym cvterm_id.	commit \| commitdiff \| tree
2022-05-12	Lukas Mueller	Merge branch 'master' into topic/rename_script_changes	commit \| commitdiff \| tree
2022-05-11	Lukas Mueller	fix typo.	commit \| commitdiff \| tree
2022-05-11	Lukas Mueller	tweak pod.	commit \| commitdiff \| tree
2022-05-11	Lukas Mueller	get the synonym cvterm id.	commit \| commitdiff \| tree
2022-05-11	Lukas Mueller	add old name as synonym by default or use option n...	commit \| commitdiff \| tree
2022-05-05	Lukas Mueller	provide organism object, not name	commit \| commitdiff \| tree
2022-05-05	Lukas Mueller	fix wrong function name to organism object.	commit \| commitdiff \| tree
2022-05-05	Lukas Mueller	select lme4 button by default.	commit \| commitdiff \| tree
2022-05-05	Lukas Mueller	add a function for converting strings to R variable...	commit \| commitdiff \| tree
2022-05-05	Lukas Mueller	adding Marlees changes from pull request 4043 manually...	commit \| commitdiff \| tree
2022-05-03	production user	Merge branch 'master' into topic/gpcp_tool	commit \| commitdiff \| tree
2022-04-29	Lukas Mueller	fix another type_id issue with a query	commit \| commitdiff \| tree
2022-04-29	Lukas Mueller	fix how update info is updated.	commit \| commitdiff \| tree
2022-04-27	Lukas Mueller	sanitize input for align_viewer tool.	commit \| commitdiff \| tree
2022-04-27	Lukas Mueller	sanitize input to est.pl	commit \| commitdiff \| tree
2022-04-27	Lukas Mueller	sanitize input string before redirecting in URL.	commit \| commitdiff \| tree
2022-04-27	Lukas Mueller	fix image search query to use placeholders.	commit \| commitdiff \| tree
2022-04-21	Lukas Mueller	fix storing of phenotype file so that colunms are not...	commit \| commitdiff \| tree
2022-04-16	Lukas Mueller	pull in a debian 11 based docker for running the tests.	commit \| commitdiff \| tree
2022-04-13	Lukas Mueller	fix conflicts.	commit \| commitdiff \| tree
2022-04-05	production user	another fix. Numeric user ids require a leading # sign...	commit \| commitdiff \| tree
2022-04-05	Lukas Mueller	DUH! do the logic correctly...	commit \| commitdiff \| tree
2022-04-04	production user	add npm user if not available; fix sgn_test.conf db...	commit \| commitdiff \| tree
2022-04-04	Lukas Mueller	adapt npm user to file ownership.	commit \| commitdiff \| tree
2022-04-02	Lukas Mueller	tweak filtering by plant sex.	commit \| commitdiff \| tree
2022-03-29	Lukas Mueller	add sommer option to mixed models; not yet working.	commit \| commitdiff \| tree
2022-03-29	Lukas Mueller	remove file.	commit \| commitdiff \| tree
2022-03-28	Lukas Mueller	add script to download stock attributes based on list...	commit \| commitdiff \| tree
2022-03-24	Lukas Mueller	make the test pass.	commit \| commitdiff \| tree
2022-03-24	Lukas Mueller	add a mixed model unit test.	commit \| commitdiff \| tree
2022-03-24	Lukas Mueller	start adding sommer support.	commit \| commitdiff \| tree
2022-03-24	production user	change how plant sex is determined by the tool.	commit \| commitdiff \| tree
2022-03-17	Lukas Mueller	implement deletion for uploaded additional files on...	commit \| commitdiff \| tree
2022-03-17	Lukas Mueller	fix execution of query in get_cv_names_from_db_name.	commit \| commitdiff \| tree
2022-03-17	Lukas Mueller	Revert "add a function to the trial metadata controller...	commit \| commitdiff \| tree
2022-03-17	Lukas Mueller	add a function to the trial metadata controller to...	commit \| commitdiff \| tree
2022-03-16	Lukas Mueller	fix typo in variable name.	commit \| commitdiff \| tree
2022-03-14	Lukas Mueller	fix treatment upload for single trial also - excel...	commit \| commitdiff \| tree
2022-03-14	Lukas Mueller	specify python3 instead of minor version because that...	commit \| commitdiff \| tree
2022-03-11	Lukas Mueller	add a function that retrieves the cv.names that are...	commit \| commitdiff \| tree
2022-03-11	Lukas Mueller	add a default value for new plant_sex_variable_name...	commit \| commitdiff \| tree
2022-03-11	Lukas Mueller	add the plant sex cvterm as a column if it is not available.	commit \| commitdiff \| tree
2022-03-09	Lukas Mueller	add the ability to download the result file.	commit \| commitdiff \| tree
2022-03-09	Lukas Mueller	add a parameter to specify the userSexes parameter.	commit \| commitdiff \| tree
2022-03-04	Lukas Mueller	do not run selenium tests.	commit \| commitdiff \| tree
2022-03-04	Lukas Mueller	remove unsupported jQuery.browser call and make no...	commit \| commitdiff \| tree
2022-03-03	Lukas Mueller	tweak user interface.	commit \| commitdiff \| tree
2022-03-02	Lukas Mueller	fix test in t/unit_mech.	commit \| commitdiff \| tree
2022-02-28	Lukas Mueller	Merge branch 'master' into topic/fix_brapi_v2_test	commit \| commitdiff \| tree
2022-02-28	Lukas Mueller	fix typos in deletion code.	commit \| commitdiff \| tree
2022-02-28	Lukas Mueller	add clean_up_db function call to some tests that create...	commit \| commitdiff \| tree
2022-02-28	Lukas Mueller	get highest primary key id instead of count of number...	commit \| commitdiff \| tree
2022-02-25	Lukas Mueller	improve removal of created seedlots.	commit \| commitdiff \| tree
2022-02-25	Lukas Mueller	also count metadata objects.	commit \| commitdiff \| tree
2022-02-25	Lukas Mueller	fix data return structure such that it actually works.	commit \| commitdiff \| tree
2022-02-25	Lukas Mueller	fix data tables ajax query, table structure etc.	commit \| commitdiff \| tree
2022-02-25	Lukas Mueller	require login for the GCPC tool.	commit \| commitdiff \| tree
2022-02-24	production user	change how result file is saved.	commit \| commitdiff \| tree
2022-02-23	Lukas Mueller	allow fields to be empty string as well as undef.	commit \| commitdiff \| tree
2022-02-21	Lukas Mueller	fix issue with test	commit \| commitdiff \| tree
2022-02-18	Lukas Mueller	wait for the animation of the login dialog to complete...	commit \| commitdiff \| tree
2022-02-15	Lukas Mueller	get another test working! Yay :-)	commit \| commitdiff \| tree
2022-02-15	Lukas Mueller	Merge branch 'master' into topic/fix_brapi_v2_test	commit \| commitdiff \| tree
2022-02-15	Lukas Mueller	tweaking tests.	commit \| commitdiff \| tree
2022-02-15	Lukas Mueller	fix more type_id queries.	commit \| commitdiff \| tree
2022-02-14	Lukas Mueller	fix the type_id in a query that caused an issue with...	commit \| commitdiff \| tree
2022-02-11	Lukas Mueller	write file with results; however, accession names do...	commit \| commitdiff \| tree
2022-02-08	Lukas Mueller	fix list validation in find trials with common accessions...	commit \| commitdiff \| tree
2022-02-06	Lukas Mueller	remove dash from R column names, use tab to split lines...	commit \| commitdiff \| tree
2022-01-31	Lukas Mueller	do not allow the computation location to be deleted.	commit \| commitdiff \| tree
2022-01-30	Lukas Mueller	fix selection index submisson and adapt R script.	commit \| commitdiff \| tree
2022-01-20	Lukas Mueller	Merge branch 'master' into topic/gpcp_tool	commit \| commitdiff \| tree
2022-01-20	Lukas Mueller	fix utf8 encoding and correctly parse DOS formatted...	commit \| commitdiff \| tree
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