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Merge pull request #4478 from solgenomics/topic/detect_duplicated_accessions_in_upload
2023-03-16
Luk
a
s Mueller
Merge pull
r
e
quest #447
8
from so
l
genom
i
cs/t
o
pic/detect_dupli
.
.
.
commit
|
commitdiff
|
tree
2023-03-16
L
u
k
a
s Mueller
Merge pull request #4479 from solgeno
m
ics/topic/re
m
ove_inven
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
Lukas Mueller
Merge pull req
u
es
t
#
4477 from solgenomics
/
topic/genotyp
i
n
g_p
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
L
ukas Muel
l
er
c
hange text about t
h
e inv
e
n
tory app; remove link
.
commit
|
commitdiff
|
tree
2023-03-13
Lukas Muel
l
er
remov
e
inv
e
n
t
o
r
y
app
l
i
n
k
, as it is
n
o
t a
v
ai
l
a
b
l
e right
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
Lu
k
as Mueller
Merge pul
l
req
u
est #4472 from
s
olg
e
nomi
c
s/topi
c
/a
d
d
_pod_to_l
.
.
.
commit
|
commitdiff
|
tree
2023-03-10
Lukas Mueller
detect duplicate
a
ccessions in valida
t
ion step
.
commit
|
commitdiff
|
tree
2023-03-09
Lukas Mu
e
l
l
er
Merge pull re
q
uest #4460 fro
m
s
o
l
g
enomi
c
s/top
i
c/fix_i
n
silic
o
.
.
.
commit
|
commitdiff
|
tree
2023-03-09
Lukas Mueller
Me
r
ge pull request #4464 from solgenomics/top
i
c/s
l
ow_acc
_
search
commit
|
commitdiff
|
tree
2023-03-09
Lukas Mueller
Merge
pull request
#
4471 from sol
g
enom
i
cs/topic/fix_blast_li
.
.
.
commit
|
commitdiff
|
tree
2023-03-09
Lukas Muell
e
r
M
erge pu
l
l
request #4467 from solgenomic
s
/t
o
pic/pedigree_dow
.
.
.
commit
|
commitdiff
|
tree
2023-03-08
Lu
k
a
s
M
uel
l
er
tweak pod format
.
commit
|
commitdiff
|
tree
2023-03-08
L
ukas
M
ueller
add POD to th
e
load_trait_pr
o
p
s
.
pl script
.
commit
|
commitdiff
|
tree
2023-03-06
Lukas
Mue
l
ler
fi
x
issu
e
s
with
b
l
as
t
d
b
_i
d
que
r
y
.
commit
|
commitdiff
|
tree
2023-03-06
Lukas Muelle
r
Merge pull request #4461
from solgenomics/topic/
i
mage_analys
.
.
.
commit
|
commitdiff
|
tree
2023-03-01
Lukas
M
ueller
remove STDERR
messag
e
s
that can gum u
p
an
e
nti
r
e server
.
commit
|
commitdiff
|
tree
2023-02-17
Lukas Mueller
M
erge pull
r
equest #4455 from so
l
genomics/top
i
c/slow_acc_search
commit
|
commitdiff
|
tree
2023-02-16
Lukas Mueller
twea
k
login sy
s
tem calls agai
n
.
commit
|
commitdiff
|
tree
2023-02-15
Luka
s
M
ueller
Merge pull reques
t
#4452 fr
o
m solgenomics/topic/fix_login_iss
u
e
commit
|
commitdiff
|
tree
2023-02-15
L
u
k
a
s Muel
l
er
fix an
iss
u
e with th
e
/user/l
o
gged_in
a
jax cal
l
.
commit
|
commitdiff
|
tree
2023-02-13
L
u
kas Mu
e
ller
f
i
x table creation for
a
ccession
a
s
sociated with tratis
.
commit
|
commitdiff
|
tree
2023-02-13
Lukas
M
ueller
c
h
ange the quer
y
for
the accession count per cv
t
er
m
.
commit
|
commitdiff
|
tree
2023-02-13
Lukas Mu
e
l
l
er
remove
"
e
m
p
ty" search
th
a
t slow
s
down search p
a
ge an
d
.
.
.
commit
|
commitdiff
|
tree
2023-02-13
Lu
k
as Mueller
Mer
g
e pu
l
l request #4421 from solgenomics/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-02-12
Lukas
Mueller
remove NA values from result fi
l
e
that would int
e
rfere
.
.
.
commit
|
commitdiff
|
tree
2023-02-12
Lukas
M
uelle
r
Merg
e
pul
l
reque
s
t #442
2
from sol
g
enomics/topic/brapi_pedig
r
ee
commit
|
commitdiff
|
tree
2023-02-12
Lu
k
as Muell
e
r
M
e
rge pu
l
l re
q
uest
#
4
426 from solgenomics/topi
c
/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
L
u
k
as Mue
l
ler
remov
e
stray d
e
b
u
ggin alert
that interferes with sel
e
n
i
u
m
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
Lukas Mueller
call the new a
c
ce
s
s
o
r for the plot numbering sch
e
m
e
.
commit
|
commitdiff
|
tree
2023-02-11
Lukas Mue
l
ler
m
odi
f
y trial test to
a
lso test
a con
s
ecuti
v
e plot
n
u
m
b
ering
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
L
u
kas M
u
ell
e
r
add a plot
n
umbering scheme
t
ype
.
commit
|
commitdiff
|
tree
2023-02-09
Lukas Mueller
Merge pull
r
equest #44
3
6 f
r
om solg
e
no
m
ics
/
t
o
pic/externalre
f
e
.
.
.
commit
|
commitdiff
|
tree
2023-02-09
Luka
s
Muel
l
er
M
erge
p
ull request #4415 from solgenomics/
t
op
i
c/fi
x
_brapi_to
.
.
.
commit
|
commitdiff
|
tree
2023-02-09
L
ukas Mueller
Merge
p
ull request #44
2
4 from solgenom
i
c
s/topic/fix_h2
commit
|
commitdiff
|
tree
2023-02-07
Lukas Muel
l
e
r
Merge branch
'
master' int
o
topic/
c
ons
e
cutive
_
plot_numb
e
ring_
.
.
.
commit
|
commitdiff
|
tree
2023-02-07
Luk
a
s Mueller
remove
d
e
buggin
alerts
.
commit
|
commitdiff
|
tree
2023-02-06
Luka
s
Muell
e
r
Merge pull request #4423 fro
m
s
o
lgen
o
mics/topic/pedigree_is
s
ue
commit
|
commitdiff
|
tree
2023-02-03
Lukas
M
ueller
r
enam
e
a
c
cessor in mor
e
logical way
,
ada
p
t code
.
commit
|
commitdiff
|
tree
2023-02-02
Luk
a
s Muelle
r
Merg
e
p
ul
l
request #4410
from solgenom
i
cs/topic/fix
.
.
.
commit
|
commitdiff
|
tree
2023-02-01
Luka
s
M
u
e
ll
e
r
Me
r
ge p
u
ll
r
equ
e
s
t
#440
1
from solgenomics/
t
opic/weather_links
commit
|
commitdiff
|
tree
2023-02-01
Lu
k
as Muell
e
r
Merge p
u
ll
request #4411 f
r
om solgenomics/top
i
c/
m
usabase_c
r
o
.
.
.
commit
|
commitdiff
|
tree
2023-02-01
Lu
k
a
s Muell
e
r
also retu
r
n url
for hist
o
gram
.
commit
|
commitdiff
|
tree
2023-01-31
Lu
k
as
M
u
e
ller
a
t
tempt
t
o fix the iss
u
e
with wrong
h
e
aders after mixed
.
.
.
commit
|
commitdiff
|
tree
2023-01-30
Lukas Muell
e
r
Merge pu
l
l req
u
e
st #4406
from sol
g
en
o
m
ics
/
topic/f
i
x_
u
ploa
d
commit
|
commitdiff
|
tree
2023-01-26
L
u
kas Mue
l
l
er
Merge pull request #4383 fro
m
s
o
lgen
o
m
ics/topic
/
targ
e
t_values
commit
|
commitdiff
|
tree
2023-01-25
Lukas Mueller
backup com
m
it
commit
|
commitdiff
|
tree
2023-01-23
L
ukas Mueller
t
w
ea
k
RCBD plugin
.
commit
|
commitdiff
|
tree
2023-01-23
Lukas Mue
l
ler
Merge pull request #4381
f
r
om so
l
g
eno
m
ic
s
/top
i
c/search_vector
commit
|
commitdiff
|
tree
2023-01-23
L
ukas Mueller
Merg
e
pull request #4384 from solg
e
nomi
c
s/topic/
u
pload_sp
r
ea
.
.
.
commit
|
commitdiff
|
tree
2023-01-11
Lukas Mueller
Merge branch 'topic/fix_cata
l
og_o
r
d
e
r
_tes
t
'
into to
p
ic
.
.
.
commit
|
commitdiff
|
tree
2023-01-11
Lukas
M
u
e
ller
add
a da
t
aset d
e
tail page
commit
|
commitdiff
|
tree
2023-01-11
Lukas Mueller
Merge pull
request #4375
f
rom so
l
genomics
/
top
i
c/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-01-11
Lukas Mueller
add a select
i
on to
t
rial workflow to allow consecu
t
ive
.
.
.
commit
|
commitdiff
|
tree
2023-01-09
L
ukas Mueller
Merge pull reques
t
#4
3
76 from solgenomic
s
/
t
opic/bulk_search_fi
x
commit
|
commitdiff
|
tree
2023-01-09
L
ukas Mueller
Merge pu
l
l
re
q
ues
t
#4369 from solge
n
om
i
c
s
/topic/graphicalfi
l
.
.
.
commit
|
commitdiff
|
tree
2023-01-05
Lukas Mu
e
ller
make
change
a
c
cess
i
on upl
o
ad featu
r
e
compatible
with
.
.
.
commit
|
commitdiff
|
tree
2023-01-05
L
ukas
M
uelle
r
Me
r
ge p
u
ll req
u
est
#
437
3
from sol
g
en
o
mics/topic/
f
ix_undef_fields
commit
|
commitdiff
|
tree
2023-01-05
L
ukas Mue
l
ler
Merge pul
l
request #
4
371 from solgenomics
/
topic/traits_copy_
.
.
.
commit
|
commitdiff
|
tree
2022-12-21
Lukas Mue
l
ler
M
e
rge pull reques
t
#4363
f
rom s
o
lgenomi
c
s/
t
opic/
o
rderi
n
g_sys
.
.
.
commit
|
commitdiff
|
tree
2022-12-20
Lu
k
as Mueller
r
e
move window
s
style line endin
g
s for
a
better
user
.
.
.
commit
|
commitdiff
|
tree
2022-12-14
Lukas Mue
l
le
r
M
e
r
g
e
p
ul
l
request #435
2
f
rom solgeno
m
ic
s
/
topic/xlsx_downloa
.
.
.
commit
|
commitdiff
|
tree
2022-12-13
L
ukas Mueller
Merge pull r
e
quest #4341 from s
o
l
g
e
n
omics/topic/rename_ac
c
e
s
.
.
.
commit
|
commitdiff
|
tree
2022-12-13
Luk
a
s Mueller
M
erg
e
pull
r
e
quest #4346 from
s
olgenomics
/
vcf-allow
.
.
.
commit
|
commitdiff
|
tree
2022-12-13
Lukas Mu
e
ller
m
ak
e
header
s
con
s
istent a
n
d chec
k
fo
r
co
r
rectness of
.
.
.
commit
|
commitdiff
|
tree
2022-12-13
Lukas Mue
l
ler
fix
i
ssues ra
i
s
e
d by T
i
tima a
n
d
Adrian
.
commit
|
commitdiff
|
tree
2022-12-12
Lukas Muell
e
r
Me
r
g
e
pull re
q
uest #4339 from solge
n
omics/topic/fix_blast_link
commit
|
commitdiff
|
tree
2022-12-12
Lukas Mu
e
ller
Merge pull request #4342 fr
o
m sol
g
enomi
c
s/topi
c
/simsear
c
h_ui
commit
|
commitdiff
|
tree
2022-12-12
Lukas Mu
e
l
le
r
fi
x
problem with
d
i
s
a
p
p
earing format dial
o
g
box
.
commit
|
commitdiff
|
tree
2022-12-12
Lukas
M
uel
l
er
Merge br
a
nch 'master'
in
t
o topic/rename
_
acces
s
i
o
n
_u
i
commit
|
commitdiff
|
tree
2022-12-12
L
u
kas Mueller
Use CXG
N
::Sto
c
k::Access
i
on i
n
ste
a
d of CXGN::
S
tock,
.
.
.
commit
|
commitdiff
|
tree
2022-12-12
L
u
kas Mueller
remove sy
n
on
y
m
f
rom
S
to
c
k again - it is in the subclass
.
.
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas M
u
e
l
ler
f
ix typo
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas Mu
e
ller
add a sentence a
b
out the
required permissions
commit
|
commitdiff
|
tree
2022-12-11
Lukas Muell
e
r
add a phrase where to
f
ind the renaming too
l
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas
M
uelle
r
add the jav
a
scr
i
pt for the acces
s
io
n
r
enamin
g
feature
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas M
u
eller
add the
A
J
AX controll
e
r for accession renaming
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas
M
ueller
add files requir
e
d for re
n
aming
a
ccessio
n
t
est
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas Mueller
add manual entry for a
c
cess
i
on renaming feat
u
r
e
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas Mueller
a
dd
a
t
est for t
h
e acc
e
ssion ren
a
ming feature
.
commit
|
commitdiff
|
tree
2022-12-11
Lu
k
as Muelle
r
add a syno
n
yms() acc
e
ssor (with lazy l
o
ading)
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas Muel
l
er
need t
o
j
oin to linkin
g
tab
l
e,
n
ot the g
r
oup table
.
.
.
commit
|
commitdiff
|
tree
2022-12-11
Lukas
M
u
eller
make the process work, me
s
sage at end is not yet cor
r
ec
t
.
commit
|
commitdiff
|
tree
2022-12-10
Luka
s
M
u
ell
e
r
allow uniquen
a
me
a
s a parameter to the
n
e
w
c
all for
.
.
.
commit
|
commitdiff
|
tree
2022-12-09
Lukas
M
u
e
ller
fix
t
itle i
n
upload s
c
ree
n
.
commit
|
commitdiff
|
tree
2022-12-08
Lukas M
u
eller
fix
p
a
ge title mason ref
.
commit
|
commitdiff
|
tree
2022-12-08
Lukas Muell
e
r
Merge pull request #4327 from solgenomics/top
i
c/r
e
d
u
ce_pheno
.
.
.
commit
|
commitdiff
|
tree
2022-12-08
Luka
s
Mue
l
l
e
r
change default graft separator string
from
+ to _on_
.
.
.
commit
|
commitdiff
|
tree
2022-12-08
Lukas M
u
eller
f
i
x cannot us
e
undefined value as ar
r
a
y ref
error
.
commit
|
commitdiff
|
tree
2022-12-08
Lukas Mueller
fix check for miss
i
ng graft
a
ccessions
.
commit
|
commitdiff
|
tree
2022-12-07
Luka
s
Muell
e
r
Merge
pul
l
re
q
uest #431
7
f
rom solgenomics
/
s
o
lgwas-fix
.
.
.
commit
|
commitdiff
|
tree
2022-12-07
Lukas Mueller
tweak user
in
t
erface
.
commit
|
commitdiff
|
tree
2022-12-07
Lukas Mu
e
ller
fix the
ot
h
er filehan
d
le as w
e
ll
.
commit
|
commitdiff
|
tree
2022-12-06
Lukas Mue
l
ler
add vcf
t
o dosage conver
s
ion to supp
o
rt
vcf
files
.
commit
|
commitdiff
|
tree
2022-12-05
Luka
s
Mueller
instead of de
r
eferencing, re
s
et the fileh
a
ndle after
.
.
.
commit
|
commitdiff
|
tree
2022-12-05
Lukas
M
u
el
l
er
Merge pul
l
re
q
u
est #4320 from
T
riticeaeToolbox/topic
.
.
.
commit
|
commitdiff
|
tree
2022-12-01
Lukas Mu
e
ller
tweaks
a
n
d code cl
e
anup
.
commit
|
commitdiff
|
tree
2022-12-01
Lukas Muelle
r
add an improv
e
d
s
tock loading
s
cript
.
commit
|
commitdiff
|
tree
2022-11-29
Lukas Mueller
format output for data table
.
commit
|
commitdiff
|
tree
2022-11-29
Lukas
M
u
e
ller
Merge
pu
l
l re
q
uest #4302 from solgenomics/to
p
i
c/gpc
p
_tool
commit
|
commitdiff
|
tree
2022-11-28
Lukas
Mueller
do
not
crash when
the pl
a
te does not have an as
s
ociated
.
.
.
commit
|
commitdiff
|
tree
next