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Merge pull request #1324 from solgenomics/topic/fieldbook_trial_download
2017-09-08
Luka
s
Mueller
Merge pull re
q
ue
s
t #1255 from
solge
n
omics/
t
opic
/
solgs
.
.
.
commit
|
commitdiff
|
tree
2017-06-29
Luk
a
s Mu
e
ller
Impl
e
mented
a t
r
ait v
a
riable sea
r
ch
commit
|
commitdiff
|
tree
2017-06-29
Lukas
Mueller
Implements side bar on
t
r
ial
d
etail page
tha
t
gives
.
.
.
commit
|
commitdiff
|
tree
2017-06-22
Lukas Mueller
fix
docum
e
n
tation for new db patch
.
commit
|
commitdiff
|
tree
2017-06-22
Lukas
Mu
e
ller
add a db patch for p
l
ants
l
ist type
.
commit
|
commitdiff
|
tree
2017-06-22
Luk
a
s Mueller
A
d
d a list
v
alidator fo
r
plant type
.
commit
|
commitdiff
|
tree
2017-06-11
Luka
s
Mueller
Merg
e
pull request
#
106
5
from
s
olgenomics/topic/
b
reeding_api
commit
|
commitdiff
|
tree
2017-05-23
Lukas Muel
l
e
r
add new musabase logo
.
commit
|
commitdiff
|
tree
2017-05-22
Lukas Muel
l
er
adapt blast he
l
p to
ne
w
blast features
.
.
.
needs
m
o
re
.
.
.
commit
|
commitdiff
|
tree
2017-05-19
Lukas Mueller
Merge
p
ull r
e
quest #1024 from solgenomic
s
/
topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2017-05-10
Lukas Mueller
Merge pull
r
equest
#
1
001 f
r
om solgenomics/topic/
g
enera
l
_changes
commit
|
commitdiff
|
tree
2017-05-09
L
ukas Mue
l
ler
M
er
g
e pull
r
e
quest
#
987 from solgenomic
s
/
t
o
p
i
c/
p
ostcomposing_alt
commit
|
commitdiff
|
tree
2017-04-26
Lukas Muell
e
r
Mer
g
e pull request #994 from s
o
lgenomics/topic/
b
reedi
n
g_api
commit
|
commitdiff
|
tree
2017-04-21
L
u
kas
M
ueller
add varito
m
e
project to genomes
menu, under pro
j
ects
.
.
.
commit
|
commitdiff
|
tree
2017-04-21
Luka
s
Mueller
Merge pull
r
e
q
ue
s
t #967 from solgenomics/to
p
ic/expression_at
.
.
.
commit
|
commitdiff
|
tree
2017-04-21
Luka
s
Muel
l
er
Mer
g
e pull
request #968 from
so
l
genomics/
t
o
p
i
c/blast_slurm
commit
|
commitdiff
|
tree
2017-04-21
Luka
s
Mueller
M
e
rge pu
l
l request #981
f
r
o
m s
o
lgenomics/t
o
pic/user_role_fixes
commit
|
commitdiff
|
tree
2017-04-21
Luk
a
s Mueller
M
e
rge pull request #971 from so
l
genomics/topic/general_changes
commit
|
commitdiff
|
tree
2017-04-21
Lukas Mueller
Merge pu
l
l request #974
from
s
olgenomics/link_ontos
commit
|
commitdiff
|
tree
2017-04-21
Lukas Mueller
add link t
o
proj
e
ct page at
nsf
.
commit
|
commitdiff
|
tree
2017-04-21
Luka
s
M
uell
e
r
add grant num
b
er and ns
f
logo to
v
arit
o
me
p
r
oejct page
.
commit
|
commitdiff
|
tree
2017-04-21
Luk
a
s
M
ueller
add va
r
itome project page
.
commit
|
commitdiff
|
tree
2017-04-13
Luka
s
M
u
ell
e
r
Me
r
g
e pull
reque
s
t #966
from
s
olge
n
om
i
cs/topic/g
e
neral_c
h
anges
commit
|
commitdiff
|
tree
2017-04-11
Lukas
Mueller
Me
r
ge pull request #957 from
solgenomics/
t
opi
c
/
s
tock_s
e
arch
commit
|
commitdiff
|
tree
2017-04-11
Lukas Mueller
M
e
rge p
u
ll request #9
5
2 from solgeno
m
ics/topi
c
/remove_t
o
olba
.
.
.
commit
|
commitdiff
|
tree
2017-04-11
L
ukas Mueller
Merge
p
ull r
e
quest #
9
45 from solg
e
nomi
c
s/topic/sto
p
_
s
gn_bugs
.
.
.
commit
|
commitdiff
|
tree
2017-04-11
Lukas Muel
l
er
Mer
g
e
p
u
ll
r
equest
#939 from
solgenomics/topic/gen
e
ric_units
.
.
.
commit
|
commitdiff
|
tree
2017-04-11
Lukas Mu
e
ller
Merge pull
r
equest #947 from solgenomics
/
topic/i
m
prove_pheno
.
.
.
commit
|
commitdiff
|
tree
2017-04-11
Lukas
M
ueller
Mer
g
e pull request #953 from solgen
o
mics/
t
o
p
ic/a
d
d_ac
c
e
ss
i
on
.
.
.
commit
|
commitdiff
|
tree
2017-04-11
Lukas M
u
eller
tweak drop dow
n
m
enu looks
.
commit
|
commitdiff
|
tree
2017-04-11
L
u
k
a
s
M
u
e
ller
clean up code fo
r
T
r
ialC
o
mparison
AJAX module
.
commit
|
commitdiff
|
tree
2017-04-11
Lukas Mue
l
ler
use get_acc
e
ssion
function instead of dataset
.
commit
|
commitdiff
|
tree
2017-04-07
Lukas Mueller
re-load the co
r
r
e
ct i
m
ages
i
f a new trait
is ch
o
sen
.
.
.
commit
|
commitdiff
|
tree
2017-04-07
Lukas M
u
eller
use CXGN::Trial get_ac
c
e
ssions(
)
to
r
e
trieve accessi
o
ns
.
commit
|
commitdiff
|
tree
2017-04-07
Lukas Muel
l
er
fix pag
e
update when
ne
w
trait is selected
.
commit
|
commitdiff
|
tree
2017-04-07
Lu
k
as Muelle
r
fix downlo
a
d, no skip necessary
.
commit
|
commitdiff
|
tree
2017-04-07
Lukas Mu
e
ller
change over to downl
o
ad function
,
i
gnore he
a
ders with
.
.
.
commit
|
commitdiff
|
tree
2017-04-06
Lukas Mueller
remove redundant files
;
c
o
py saved
i
n
t
o
pic/anal
y
z
e
_ph
e
n
otyp
.
.
.
commit
|
commitdiff
|
tree
2017-04-05
Lukas M
u
e
l
l
e
r
co
n
verti
n
g the get_
c
ross_
i
nfo func
t
ion
to a class method
.
commit
|
commitdiff
|
tree
2017-04-05
Lukas Mueller
Use placeholders in SQL statements for
c
ross
sea
r
ch
.
commit
|
commitdiff
|
tree
2017-03-31
Lukas M
u
eller
Merge
p
ull reque
s
t #933 from
s
olgeno
m
ics
/
topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2017-03-30
L
ukas Mueller
us
e
Trial object and Downlo
a
d to retri
e
ve data
.
commit
|
commitdiff
|
tree
2017-03-29
L
ukas
M
uell
e
r
a
dd miss
i
ng mason componen
t
no_list
.
mas
.
commit
|
commitdiff
|
tree
2017-03-29
Lu
k
as Mueller
M
e
rg
e
pull re
q
uest #926 from solgenomics/t
o
p
i
c/
p
henotype_upl
.
.
.
commit
|
commitdiff
|
tree
2017-03-29
L
ukas
M
u
eller
Merge
p
u
l
l request #910
f
rom solgenomics/top
i
c
/accessio
n
_bp_
.
.
.
commit
|
commitdiff
|
tree
2017-03-28
Lukas Mu
e
ll
e
r
Merge
pull
request #
9
25
f
rom so
l
geno
m
ics/topic/breeding_a
p
i
commit
|
commitdiff
|
tree
2017-03-28
L
u
kas Mueller
M
erge branch 'master' int
o
topic/analyze_phenotypes_page
commit
|
commitdiff
|
tree
2017-03-28
Lukas Muel
l
e
r
remove
reference to SOL as this a
p
p
e
ars
a
l
so on o
t
her
.
.
.
commit
|
commitdiff
|
tree
2017-03-28
Luk
a
s Muel
l
er
Merge bran
c
h 'maste
r
'
i
nto topic/anal
y
ze
_
phenotypes_page
commit
|
commitdiff
|
tree
2017-03-28
Lukas
M
ueller
Update test an
d
redir
e
ct
t
o
l
o
g
in p
a
ge for the tri
a
l
.
.
.
commit
|
commitdiff
|
tree
2017-03-24
Lukas Mueller
Merg
e
pull
r
eques
t
#907 from
s
olg
e
no
m
ic
s
/topic/locus_editor_
.
.
.
commit
|
commitdiff
|
tree
2017-03-23
Lukas Mu
e
ll
e
r
change location
o
f
a
f
filiate
d
_site
s
source file, f
r
o
m
.
.
.
commit
|
commitdiff
|
tree
2017-03-23
Lukas Mueller
remove SOL
r
e
f
eren
c
e on olde
v
e
nts p
a
g
e
.
commit
|
commitdiff
|
tree
2017-03-23
Lukas Mueller
remove reference to SOL
as this
a
ppears a
l
so
o
n other
.
.
.
commit
|
commitdiff
|
tree
2017-03-10
Luk
a
s Mueller
M
erge branch
'
master' into topi
c
/analyz
e
_
p
he
n
o
t
y
p
es_p
a
ge
commit
|
commitdiff
|
tree
2017-03-09
Lukas Muell
e
r
Merge pull req
u
est #909 f
r
om s
o
lgenomics/t
o
pic/CrossSearch
F
ix
commit
|
commitdiff
|
tree
2017-03-08
Lukas
Muell
e
r
Merge pull request #902 from sol
g
e
n
omics/topic/list_fixes
commit
|
commitdiff
|
tree
2017-03-02
Lukas
M
ueller
a
d
d a second
p
age
t
hat us
e
s paramete
r
s to define trials
.
.
.
commit
|
commitdiff
|
tree
2017-03-02
L
u
kas Mueller
Mer
g
e pull request #893
f
rom solgenomics/t
o
pic/ge
n
eral_c
h
anges
commit
|
commitdiff
|
tree
2017-02-24
Lukas Mueller
Merge branch '
m
aster' into topic/anal
y
ze_ph
e
n
otypes_page
commit
|
commitdiff
|
tree
2017-02-24
Lukas
Mueller
add a t
e
st
for
t
r
i
al
comparison tool
.
commit
|
commitdiff
|
tree
2017-02-20
L
u
kas Mueller
r
e
port
h
ow many
a
ccessions and traits are in common
.
.
.
commit
|
commitdiff
|
tree
2017-02-16
Lukas Mu
e
ller
add patch for d
a
taset functionality
.
commit
|
commitdiff
|
tree
2017-02-16
Luka
s
Muelle
r
tweak
user in
t
erface to show l
i
st selection only
.
commit
|
commitdiff
|
tree
2017-02-16
Lukas Mu
e
ller
clean u
p
code
commit
|
commitdiff
|
tree
2017-02-15
Lukas
Muel
l
e
r
Me
r
ge branch 'master' into
t
o
p
ic
/
analyze_pheno
t
yp
e
s_page
commit
|
commitdiff
|
tree
2017-02-15
Luka
s
Mueller
cha
n
ge interface to acce
p
t tri
a
l lists
.
commit
|
commitdiff
|
tree
2017-02-14
Lukas Mueller
M
erge branch 'm
a
ster' into
t
opic/analy
z
e_phenotype
s
_page
commit
|
commitdiff
|
tree
2017-02-14
L
u
kas Mueller
add co
m
paris
o
n based on trial lists
.
commit
|
commitdiff
|
tree
2017-02-11
L
u
kas
M
u
e
ller
tweak execut
i
on of R-
s
cript, improve
errorre
p
orti
n
g
.
commit
|
commitdiff
|
tree
2017-02-11
Lukas
Muel
l
er
re
m
ove support for c
o
mp
a
ring blocks for now - too many
.
.
.
commit
|
commitdiff
|
tree
2017-02-10
Lukas
Mueller
use
CXGN::Dataset to get t
h
e data
.
commit
|
commitdiff
|
tree
2017-02-08
Lukas Muell
e
r
add trial comparis
o
n cont
r
oller
.
commit
|
commitdiff
|
tree
2017-02-08
Lukas Mueller
add simple user interface
for trial comparison
tool
.
commit
|
commitdiff
|
tree
2017-02-06
Lukas M
u
eller
backup commit
.
commit
|
commitdiff
|
tree
2017-01-31
L
u
k
as M
u
eller
Merge
bra
n
ch 'master' i
n
to topic/an
a
lyze_phenotypes_page
commit
|
commitdiff
|
tree
2017-01-31
Lukas Mue
l
ler
R
part draft im
p
le
m
entation done; st
a
rt to link
t
o
.
.
.
commit
|
commitdiff
|
tree
2017-01-23
Lukas Mue
l
ler
a
d
apt retrieve_genotypes funct
i
on to
n
ew func
t
ion return
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
L
ukas M
u
elle
r
adapt to new
f
u
ncti
o
n signatures in CXGN::Bre
e
d
e
r
Se
a
r
ch
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
Lukas Mu
e
ll
e
r
add dataset obj
e
cts
.
commit
|
commitdiff
|
tree
2017-01-20
Lukas Muelle
r
m
o
re conf
l
i
c
t
s
commit
|
commitdiff
|
tree
2017-01-20
Lu
k
as Mueller
more co
n
f
lic
t
s
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
Lukas Mueller
more confl
i
cts
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
L
u
kas Mueller
fix more conflicts
commit
|
commitdiff
|
tree
2017-01-20
Luka
s
Muelle
r
fix
m
ore con
f
lict
s
commit
|
commitdiff
|
tree
2017-01-20
Lukas Muel
l
er
f
ix
conflicts
commit
|
commitdiff
|
tree
2017-01-20
Lukas Mueller
initial comm
i
t of Dataset
o
bject
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas M
u
eller
add ini
t
ia
l
seedlot objects
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas
M
u
e
l
ler
t
w
eak Build
.
PL; rem
o
ve
debug msg from
d
at
a
set test
.
commit
|
commitdiff
|
tree
2017-01-14
Luk
a
s
M
u
eller
ad
d
POD
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas
Mueller
add POS to dataset class
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas M
u
e
l
l
e
r
tweak test a
l
ittle
.
commit
|
commitdiff
|
tree
2017-01-14
Luk
a
s Mueller
add
more t
e
sts f
o
r store/retrie
v
e functions
commit
|
commitdiff
|
tree
2017-01-14
L
u
kas Mueller
add test
f
or
d
a
t
a
s
e
t
; fix sa
v
e
/re
s
t
o
re and access
o
rs
.
.
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas
Mue
l
ler
i
ni
t
ial commit o
f
Dat
a
set object
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas M
u
e
ller
add an
a
ccessor for the
CXGN:
:
People::S
c
he
m
a schem
a
s
.
commit
|
commitdiff
|
tree
2017-01-14
Lukas Mu
e
ller
allow
co
m
m
and line param
e
ter
s
in
a
n
alyze_phenotype
.
.
.
commit
|
commitdiff
|
tree
2017-01-04
Luka
s
Mueller
twea
k
se
e
d
l
ot objects a
n
d te
s
t
.
commit
|
commitdiff
|
tree
2017-01-04
Lukas Mueller
add POD
.
commit
|
commitdiff
|
tree
2016-12-17
Luka
s
M
u
eller
refacotr CXGN:
:
Chado:
:
Stock int
o
CXGN::Stock and make
.
.
.
commit
|
commitdiff
|
tree
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