| 2010-11-30 |
Robert Buels | for some reason, the marker aliases did not get into...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | fix click-links on regular markers track in both ITAG1...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | render rich gbrowse xrefs on marker pages. add sgn_markers...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | render rich gbrowse xrefs on unigene page
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | fix balloon click ajax target, feature name is now...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | actually, can still use the gene glyph, and it has...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | go back to using processed_transcript for ITAG2 genes...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | update ITAG2 gbrowse examples
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | fix tabs and trailing whitespace in genefamily.t
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | partially fix genefamily.t by adding genefamily defs...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | filter locus page gbrowse matches to only genomic
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | make ITAG2 gbrowse gene models have "click for more...
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commit | commitdiff | tree |
| 2010-11-30 |
Robert Buels | make "Other genome matches" locus page section collapsed...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | set ITAG2 release date as yesterday
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | squash debug print
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | bugfix to context.t test for temp_uri X pattern. there...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | fix odd quoting in locus page titles
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | tweak margin on gbrowse rich xref images
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | exclude self-xrefs from the locus detail page
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | add LocusPages site feature to provide xrefs for locus...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | can skip CGIs in featurepages xref tests
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | make default xref link set view uniqify xref links
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | add cmp, eq, and uniq functions for sitefeature xrefs
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | tweak descriptive name of gbrowse site feature
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | shut up stderr print in test
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | Merge branch 'feature_improvements'
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | code formatting
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | only show tomato annotation releases that have connectable...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | work around Bio::Graphics being sloppy about using $_
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | update View/Feature.t for recent view tweaks
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | fixed integration/feature.t for recent view tweaks
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | add capitalization to titles of page and basic data...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | refactor mrna and protein sequence calculation, adding...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | more beautification of cvterm links
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | refactor feature_data.mas to move info_section into...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | tweak display of gbrowse2 rich xrefs. put the image...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | add a couple of prettifying uses of type_name
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | add type_name func to SGN::View::Feature for prettifying...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | cannot #include gbrowse conf files into another, there...
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | bugfixes to site xrefs stuff
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | depend on latest version of BCS
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commit | commitdiff | tree |
| 2010-11-29 |
Robert Buels | debugging output squash
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | update ITAG2 gbrowse url for ajaxy-clicky-balloon-xrefs
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | fix validate/qtl.t test count
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | tweak sequence controller error conditions and fix...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | warning squash
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add dbh leak check to feature integration test
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | refactor dbh leak check to reside mainly in SGN::Test...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | remove t/validate feature tests, replacing with an...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | tweak locus display page error conditions, fix locus...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | fix feature.t tests, tweak and squash warnings in dbxref...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | bugfix to locus page, locus code assumes an *empty...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | tweak structure diagram order and wording on gene page
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | fixed feature_gene.t integration tests
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | fix SGN::View::Feature tests
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add controller with a web service for serving sitefeature...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add basic TO_JSON method to SGN::SiteFeatures::CrossReferenc...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | fix some more off-by-one errors in feature display...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | bugfix to Related views section on locus page, was...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add support for passing flags to $c->feature_xrefs...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add SGN site feature SGN::Feature::FeaturePages, providing...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add a couple more xref default views for links and...
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | correct some code comments
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commit | commitdiff | tree |
| 2010-11-28 |
Robert Buels | add support for default descriptions of site features...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | add Related views mixed-xrefs view to the bottom of...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | refactor locus page xrefs, query them in the controller...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | moved some perl code out of the locus_display mason...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | move gbrowse rich xref styles into stylesheet
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | gbrowse rich xref now also makes the sequence region...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | move gene model matches to first position under locus...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | add gene model matches to locus page
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | refactor locus genome matches display to use gbrowse...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | added rich xref set view for gbrowse2
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | make locus genomic matches mason component take a...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | indentation
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | clean up feature page species link html
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | make feature_data component support multiple description...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | tweak get_description in View::Feature to return truly...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | tweak some gene page section titles
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | refactor related_features mason component again, group...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | columnar_table mason component does not actually require...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | tweak wording of related features section headings
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | tweak section order and layout of gene page
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | move the info_section out of the related_features component...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | rewrite mrna sequence calculation to use the new subseq...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | add some more location string functions to SGN::View...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | fix off-by-one error introduced by me. reverts 6cada7f8bc62...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | formatting tweak
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | remove sections on gene page we don't have yet (empty...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | defaults for children, parents, and xrefs on gene page...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | make mixed-xrefs "Related views" collapsible on feature...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | no longer use "children" and "parents" in the feature...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | code formatting tweak
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | add some filtering support to mixed-xrefs-links mason...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | make default feature page titled with the type of the...
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | tweak title of feature properties section
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | only try to render featureprops that are shorter than 1K
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commit | commitdiff | tree |
| 2010-11-27 |
Robert Buels | rewrite dbic query for feature description props to...
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commit | commitdiff | tree |
| 2010-11-26 |
Robert Buels | make feature_link handle a missing feature by printing...
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commit | commitdiff | tree |
| 2010-11-26 |
Robert Buels | remove unnecessary javascript inclusion
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commit | commitdiff | tree |
