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Merge branch 'master' into topic/update_cxgn_fixture_2023_06_30
2023-08-07
L
u
kas
M
ueller
Merge branch 'master'
i
nto
topic/u
p
dat
e
_cxgn_fixture_2023_06_30
commit
|
commitdiff
|
tree
2023-08-07
Lukas Muelle
r
update breedbas
e
t
o
version v0
.
80 in the test
.
yml
f
il
e
.
commit
|
commitdiff
|
tree
2023-08-04
L
uka
s
Muell
e
r
Merge
b
r
anch 'maste
r
' into topic/up
d
ate_cx
g
n
_
f
ixture_2023_06_30
commit
|
commitdiff
|
tree
2023-08-01
Luk
a
s M
u
eller
Mer
g
e pull
requ
e
st #4606 from solgenomics/topi
c
/fix
.
.
.
commit
|
commitdiff
|
tree
2023-07-29
Lukas Mueller
Merge pull request #459
4
from solgenomic
s
/topic/blas
t
_load_s
.
.
.
commit
|
commitdiff
|
tree
2023-07-18
Luka
s
Mu
e
ll
e
r
Merge pul
l
request #4593 from
solgenom
i
cs
/
remove
_
duplicate
_
s
.
.
.
commit
|
commitdiff
|
tree
2023-07-18
L
u
kas Mueller
Mer
g
e p
u
ll request
#
4
591 from solgenomics/topic/accession_up
.
.
.
commit
|
commitdiff
|
tree
2023-07-18
Lukas Mueller
M
e
rge pull req
u
est #4589 from
solge
n
omics/to
p
ic/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-07-18
Lu
k
as
M
ueller
add
a script to pop
u
late
t
he
blast tables
.
commit
|
commitdiff
|
tree
2023-07-13
Lukas Mueller
Merge p
u
ll request #4583 from so
l
genomics/topi
c
/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-07-13
Lukas Mueller
Merge pull request #
4
584 from solgenomics/topic/
s
o
lgs
.
.
.
commit
|
commitdiff
|
tree
2023-07-07
Lukas Mueller
Merge pul
l
reque
s
t #4554 from solgenom
i
cs/topic/ti
s
su
e
_sampl
.
.
.
commit
|
commitdiff
|
tree
2023-06-30
Luk
a
s
Mueller
Merge pull
r
equest #4580 from
s
o
l
g
e
n
omics/topic/improve_dele
.
.
.
commit
|
commitdiff
|
tree
2023-06-27
Lukas Mue
l
ler
add
s
tock type to delete script for cas
e
s where different
.
.
.
commit
|
commitdiff
|
tree
2023-06-17
Lukas Mueller
Mer
g
e pull request #4571 from sol
g
enomics/to
p
i
c
/fix_field
b
oo
.
.
.
commit
|
commitdiff
|
tree
2023-06-12
Lukas Mueller
Merge pu
l
l
request
#
4562 from so
l
g
enom
i
cs/topic/fixing
_
n
a
mes_h2
commit
|
commitdiff
|
tree
2023-06-12
Luka
s
Muel
l
er
Merge pull request #4566
f
rom
s
olgenomics/topic/delete_m
o
dule
commit
|
commitdiff
|
tree
2023-06-12
Lukas Mueller
Mer
g
e
pull
r
e
q
uest #4567 from so
l
genomics/top
i
c/relax_phen_v
.
.
.
commit
|
commitdiff
|
tree
2023-05-31
Lu
k
as Mue
l
ler
M
erge pull request #455
9
from solgenomics/
t
opic/genotyping_data
commit
|
commitdiff
|
tree
2023-05-31
L
u
k
a
s M
u
eller
Merge p
u
ll re
q
uest #
4
5
46 f
r
om s
o
lgenomic
s
/
t
opic/fix_loa
d
_peo
.
.
.
commit
|
commitdiff
|
tree
2023-05-31
L
ukas
Mueller
Merge pull request #4541 from solgen
o
mics
/
topic/stoc
k
_serch_
.
.
.
commit
|
commitdiff
|
tree
2023-05-31
Luk
a
s Mue
l
ler
Me
r
ge pull
r
e
quest #4550
f
r
o
m
s
olgenomics/top
i
c/fixing_n
a
m
e
s_h2
commit
|
commitdiff
|
tree
2023-05-26
Lukas Muelle
r
Merge pul
l
request #454
4
from solgen
o
mics/topic/cross_upl
o
ad
commit
|
commitdiff
|
tree
2023-05-15
Lukas Mueller
M
erge p
u
ll
request #4533 fr
o
m s
o
l
genomic
s
/topic/acces
s
io
n
_do
.
.
.
commit
|
commitdiff
|
tree
2023-05-15
Lukas Mueller
Merge
p
ull
r
e
q
uest #
4
531 from
sol
g
enomics/topic/add_pedigree
.
.
.
commit
|
commitdiff
|
tree
2023-05-15
Lukas Mueller
Merge pull r
e
q
uest #4
5
34
f
rom solge
n
omics/topic/add
i
ng_op
t
io
.
.
.
commit
|
commitdiff
|
tree
2023-05-11
Lukas Mueller
Merge
p
ull request
#
452
3
from solgenomics/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2023-05-11
L
u
kas Muelle
r
Mer
g
e pull
r
e
q
uest #
4
5
32 from
so
l
gen
o
mic
s
/topic/byp
a
ss_requi
.
.
.
commit
|
commitdiff
|
tree
2023-05-10
Lukas M
u
ell
e
r
M
e
rge pul
l
request #4
5
2
7 f
r
o
m solgenomics/topic/
f
ix_acc
e
ssio
.
.
.
commit
|
commitdiff
|
tree
2023-05-09
Lukas Mueller
m
ake expression more expli
c
it
.
commit
|
commitdiff
|
tree
2023-05-08
Lukas Mueller
Merg
e
pull requ
e
st #4
5
28 from solgenomics/topic/acc
e
s
s
ion_us
.
.
.
commit
|
commitdiff
|
tree
2023-05-08
Lukas Mueller
mak
e
the format fo
r
p
e
digree
u
ploads a lit
t
le clearer
.
commit
|
commitdiff
|
tree
2023-05-08
Lukas Mueller
Merge pull request #4529 from solgenomics/topic/a
d
d_at
t
r
ibut
.
.
.
commit
|
commitdiff
|
tree
2023-05-04
Lukas M
u
el
l
e
r
f
i
x parens i
n
expr
e
ss
i
on
.
commit
|
commitdiff
|
tree
2023-05-02
Lukas M
u
ell
e
r
Merge pull requ
e
st #4522 from solgeno
m
ics/topic/merge_sto
c
k_
.
.
.
commit
|
commitdiff
|
tree
2023-05-01
Lukas
M
ueller
Merge pu
l
l request #4517 fro
m
solgenom
i
c
s
/to
p
ic/f
i
x_acc
e
ssio
.
.
.
commit
|
commitdiff
|
tree
2023-04-28
Luk
a
s Muel
l
er
add a dbpatch that a
d
ds cascad
i
ng d
e
lete to phenome
.
.
.
commit
|
commitdiff
|
tree
2023-04-27
Lukas Mueller
sometimes,
traits wi
l
l just be a sc
a
l
ar
.
Convert to
.
.
.
commit
|
commitdiff
|
tree
2023-04-27
Luka
s
Mueller
make code look nice
r
.
commit
|
commitdiff
|
tree
2023-04-27
Lukas Mu
e
ller
Merge pull request #4508 from s
o
lg
e
nomics/to
p
ic/gitactio
n
_do
.
.
.
commit
|
commitdiff
|
tree
2023-04-24
Luk
a
s Mue
l
ler
Me
r
ge pu
l
l reques
t
#4511 from solge
n
omic
s
/topic/inoculation_
.
.
.
commit
|
commitdiff
|
tree
2023-04-10
Lukas Mueller
Merge pull
request
#4506 fro
m
solgenom
i
cs/topic/u
p
load
_
bulk_
.
.
.
commit
|
commitdiff
|
tree
2023-04-06
Lukas
Mueller
Merge pull reques
t
#
4
505 f
r
om solg
e
nomics/topic/fix_manu
a
l_links
commit
|
commitdiff
|
tree
2023-04-03
Lukas Muelle
r
remove facebook and twitter links; fix manual link
.
commit
|
commitdiff
|
tree
2023-04-03
Lukas Mueller
a
dd more
links
.
commit
|
commitdiff
|
tree
2023-04-03
Lukas Muell
e
r
docs/in
d
ex
.
md
commit
|
commitdiff
|
tree
2023-04-03
Lu
k
as Mueller
fix
h
elp pag
e
.
commit
|
commitdiff
|
tree
2023-04-03
L
ukas Mue
l
l
er
f
i
x help and about l
i
nks
.
commit
|
commitdiff
|
tree
2023-03-30
Lukas Muell
e
r
Merge pull re
q
uest #4502 from so
l
genomics
/
topic/fix_er
r
or_b
u
.
.
.
commit
|
commitdiff
|
tree
2023-03-30
Luka
s
M
u
eller
Merge
p
ull req
u
e
st #4494 f
r
o
m solgenomics/topic/s
e
le
c
ti
o
n_in
.
.
.
commit
|
commitdiff
|
tree
2023-03-30
Luk
a
s Mueller
Merg
e
pull requ
e
st #
4
4
8
8
from
T
riticeae
T
o
o
lb
o
x/topic
.
.
.
commit
|
commitdiff
|
tree
2023-03-30
Lukas Mueller
M
erge
p
ull
r
equest #4490
from so
l
genomics/topic/updat
e
_em
p
t
y
.
.
.
commit
|
commitdiff
|
tree
2023-03-30
Lukas
Mueller
Me
r
ge pu
l
l
request #449
6
from solgenomics/top
i
c/locations
_
ze
.
.
.
commit
|
commitdiff
|
tree
2023-03-30
Lukas Muel
l
er
Merge pu
l
l
request #4497 f
r
o
m
solge
n
omi
c
s/topic/computed
_
val
.
.
.
commit
|
commitdiff
|
tree
2023-03-24
Lukas
Mu
e
l
ler
Merge pull request #4495 from solgenomics/topic
/
climmob_access
commit
|
commitdiff
|
tree
2023-03-24
Lukas
Mu
e
lle
r
M
erge pull request #4480 from solgenomics/to
p
i
c/seedlot_se
a
r
.
.
.
commit
|
commitdiff
|
tree
2023-03-17
L
u
kas Mueller
update empty fixture: remove test
a
c
coun
t
s (
o
nly ad
m
in
.
.
.
commit
|
commitdiff
|
tree
2023-03-16
L
u
kas M
u
eller
Merge pu
l
l request #4476 from solgeno
m
i
cs/t
o
pic/locati
o
n_cod
.
.
.
commit
|
commitdiff
|
tree
2023-03-16
Lukas Mueller
Merge p
u
ll requ
e
st #4478 f
r
om solgenomics/topic/detect_dupli
.
.
.
commit
|
commitdiff
|
tree
2023-03-16
Lukas Mueller
M
erge pull request #4479 from solge
n
omics/topic/remo
v
e_inven
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
Lukas Mueller
Mer
g
e
pull reques
t
#4477 from s
o
lgeno
m
ic
s
/topic/g
e
notypin
g
_p
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
Lu
k
as Mueller
change text about the
i
nventory app; remove link
.
commit
|
commitdiff
|
tree
2023-03-13
Luk
a
s Mueller
remove
inve
n
t
o
ry app
l
ink, as it is not availab
l
e
r
i
gh
t
.
.
.
commit
|
commitdiff
|
tree
2023-03-13
Lukas Mueller
Merge pu
l
l request
#447
2
from solg
e
nom
i
cs/t
o
p
ic/add_pod
_
to_l
.
.
.
commit
|
commitdiff
|
tree
2023-03-10
Lu
k
as
M
uel
l
er
d
etect dupl
i
cate acces
s
ions in vali
d
ation step
.
commit
|
commitdiff
|
tree
2023-03-09
L
u
kas Mueller
M
e
r
ge
pull request #4460
from solgenomi
c
s/topic
/
fix_
i
nsil
i
co
.
.
.
commit
|
commitdiff
|
tree
2023-03-09
Lukas Mueller
Mer
g
e
pull request #4464
f
rom
solgenomics/topic
/
slow
_
acc_
s
earch
commit
|
commitdiff
|
tree
2023-03-09
L
u
kas Mueller
Merge pull
request #447
1
f
ro
m
solgenomics/topic/fix_blast
_
li
.
.
.
commit
|
commitdiff
|
tree
2023-03-09
Lukas Mueller
Me
r
ge pul
l
request
#
4467 from solge
n
o
m
ics/top
i
c/pedigree_dow
.
.
.
commit
|
commitdiff
|
tree
2023-03-08
L
ukas M
u
eller
tweak pod format
.
commit
|
commitdiff
|
tree
2023-03-08
Lukas
M
ue
l
le
r
add POD
t
o the load_t
r
ait_p
r
ops
.
pl
s
cr
i
pt
.
commit
|
commitdiff
|
tree
2023-03-06
Lu
k
a
s
Muelle
r
fix issue
s
with
blast
d
b
_id q
u
ery
.
commit
|
commitdiff
|
tree
2023-03-06
Lukas Mueller
Merge pull request #4461
f
rom solgenomics/
t
opic/im
a
ge_a
n
alys
.
.
.
commit
|
commitdiff
|
tree
2023-03-01
Lukas
Mueller
remove STDERR messages that can
g
u
m
up
a
n
e
n
tire se
r
ver
.
commit
|
commitdiff
|
tree
2023-02-17
Lukas Mueller
Mer
g
e pull request #44
5
5 from s
o
lg
e
n
o
mics/to
p
ic/slow_acc_sear
c
h
commit
|
commitdiff
|
tree
2023-02-16
Lukas Mueller
tweak login system cal
l
s again
.
commit
|
commitdiff
|
tree
2023-02-15
Luka
s
Mueller
Merge pull reques
t
#
4
452 fr
o
m sol
g
e
nomics/
t
op
i
c/fix_login_issue
commit
|
commitdiff
|
tree
2023-02-15
Lukas Mueller
fi
x
an is
s
ue with the /user/logged
_
in ajax call
.
commit
|
commitdiff
|
tree
2023-02-13
L
ukas Mue
l
l
er
fix table creati
o
n for a
c
cessio
n
associat
e
d
w
i
th tratis
.
commit
|
commitdiff
|
tree
2023-02-13
Luka
s
Mueller
c
hange the que
r
y
f
o
r the accessi
o
n
c
ount per
c
vterm
.
commit
|
commitdiff
|
tree
2023-02-13
Lukas Mueller
remo
v
e "empty
"
searc
h
that slows
dow
n
search pa
g
e and
.
.
.
commit
|
commitdiff
|
tree
2023-02-13
Luka
s
Mueller
M
e
rge pu
l
l request #4
4
21 from s
o
lgenomics/topic/solg
s
.
.
.
commit
|
commitdiff
|
tree
2023-02-12
Lukas Muel
l
e
r
remove NA values
from resu
l
t fi
l
e that would i
n
terfe
r
e
.
.
.
commit
|
commitdiff
|
tree
2023-02-12
L
u
kas Muelle
r
Merge pul
l
request #4422
from sol
g
e
n
o
mi
c
s
/topic/
b
rapi
_
pedigree
commit
|
commitdiff
|
tree
2023-02-12
Lukas Mueller
Merge
pu
l
l
r
e
quest #442
6
from solg
e
nomics/topic/s
o
lgs
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
Lukas Mueller
r
em
o
ve
s
tr
a
y debuggi
n
alert that interferes with selenium
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
L
u
ka
s
Mueller
c
all the new a
c
cessor
f
or the
p
l
o
t
numbering scheme
.
commit
|
commitdiff
|
tree
2023-02-11
Luk
a
s Mue
l
le
r
modify trial test t
o
also test a
c
onsecutive p
l
ot
nu
m
be
r
ing
.
.
.
commit
|
commitdiff
|
tree
2023-02-11
L
ukas Muel
l
er
a
dd a plot numbering scheme
t
y
p
e
.
commit
|
commitdiff
|
tree
2023-02-09
Lukas
M
u
eller
Merg
e
pull reque
s
t
#4436 from solgenom
i
c
s
/topic/externa
l
ref
e
.
.
.
commit
|
commitdiff
|
tree
2023-02-09
Lukas
M
u
ell
e
r
Merge pull request #441
5
f
rom solgenomics/topic/fix_brapi_to
.
.
.
commit
|
commitdiff
|
tree
2023-02-09
Lukas Muel
l
er
Merge pu
l
l
r
eque
s
t #4424 from solge
n
omi
c
s/to
p
ic/fix_h2
commit
|
commitdiff
|
tree
2023-02-07
Lukas Mueller
Merge
branch 'master' into topic/
c
o
nse
c
u
t
ive_plo
t
_numbering_
.
.
.
commit
|
commitdiff
|
tree
2023-02-07
Lukas
Mueller
remove debu
g
gin alerts
.
commit
|
commitdiff
|
tree
2023-02-06
Lukas Mueller
M
erge pull request #44
2
3 from sol
g
enomics/topic/pedigree_issu
e
commit
|
commitdiff
|
tree
2023-02-03
Lukas Mueller
r
e
nam
e
access
o
r in more
l
ogica
l
wa
y
, adapt cod
e
.
commit
|
commitdiff
|
tree
2023-02-02
Luka
s
Mueller
Merge pu
l
l
r
equest #4410 from solgenomics/top
i
c/f
i
x
.
.
.
commit
|
commitdiff
|
tree
2023-02-01
Lukas
M
uel
l
er
Merge pull request #4
4
01 from solgen
o
mics/to
p
i
c
/weather_
l
i
nks
commit
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2023-02-01
Lu
k
as Mueller
Me
r
ge pull request #4411 from solgen
o
mics/topi
c
/
musabase_cro
.
.
.
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2023-02-01
Lukas Mueller
al
s
o
return u
r
l for histog
r
am
.
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