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allow download of all accessions in a protocol by not specifying an input file.
2022-10-27
Lukas M
u
eller
allow
d
ownload of all accessions in
a
protocol
b
y
n
o
t
.
.
.
commit
|
commitdiff
|
tree
2022-10-27
Luk
a
s Mueller
fix
p
aths
i
n Simsearc
h
, add script to down
l
oad genotype
s
.
commit
|
commitdiff
|
tree
2022-10-27
L
ukas Muelle
r
a
d
d a script to
d
o
w
nload genotype
s
.
commit
|
commitdiff
|
tree
2022-10-27
Luk
a
s Muell
e
r
t
w
e
a
k re
f
erence file han
d
ling
.
commit
|
commitdiff
|
tree
2022-10-27
Lukas Mueller
add upl
o
ad file mason component
.
commit
|
commitdiff
|
tree
2022-10-27
L
uka
s
Muell
e
r
Merg
e
branch 'master' i
n
to topic/
s
imsearch_ui
commit
|
commitdiff
|
tree
2022-10-27
Lukas Mue
l
ler
M
e
rge p
u
ll
r
equest #
4
2
64 fro
m
s
olgeno
m
ics/topic/gpcp_tool
commit
|
commitdiff
|
tree
2022-10-27
Lukas Mueller
tweaks to input page
.
commit
|
commitdiff
|
tree
2022-10-26
Lukas M
u
e
l
ler
tweak input page
.
commit
|
commitdiff
|
tree
2022-10-25
Lukas Mueller
Mer
g
e branch '
m
aster' i
n
to topic/si
m
search
_
ui
commit
|
commitdiff
|
tree
2022-10-24
Lu
k
as Muell
e
r
Merge pull
r
e
q
uest #42
4
7 from solgenomics/topic/stat_ontolog
.
.
.
commit
|
commitdiff
|
tree
2022-10-20
Luka
s
Mueller
M
e
rge pull req
u
est #4258
f
rom solgenomics/topic/sommer
_
stat_
.
.
.
commit
|
commitdiff
|
tree
2022-10-20
Lukas Mueller
Merge pull r
e
quest #42
5
1
from solgenomics/topic/fix_pedigree
.
.
.
commit
|
commitdiff
|
tree
2022-10-20
Lukas M
u
elle
r
Merge pull req
u
est #4254 from solg
e
nomics/topi
c
/
f
ixture_c
l
e
a
.
.
.
commit
|
commitdiff
|
tree
2022-10-19
L
u
ka
s
Mu
e
l
ler
Merge
branch 'maste
r
' into topic/si
m
search_ui
commit
|
commitdiff
|
tree
2022-10-18
Luk
a
s
Mueller
imp
l
em
e
nt
s
im
s
earc
h
cont
r
o
ller, ad
d
d
e
fault for simsearc
h
.
.
.
commit
|
commitdiff
|
tree
2022-10-17
Luk
a
s Mueller
add support for dosage file format
i
n
put
.
commit
|
commitdiff
|
tree
2022-10-17
L
u
k
a
s
M
ueller
Merge pull request
#
4246
fro
m
solgeno
m
ics/
t
op
i
c/s
o
lgs
.
.
.
commit
|
commitdiff
|
tree
2022-10-17
Luka
s
Mueller
Merge pull request #4
2
49 from so
l
gen
o
mics/topic/ad
d
_
treatmen
.
.
.
commit
|
commitdiff
|
tree
2022-10-14
Lukas Mueller
ha
n
dling vecto
r
c
o
nstructs also in
secondary
check
.
commit
|
commitdiff
|
tree
2022-10-14
Lukas Mu
e
lle
r
f
ix typo in packag
e
name
f
or p
l
u
gin
.
commit
|
commitdiff
|
tree
2022-10-14
L
ukas Mueller
add li
s
t vali
d
a
t
ion
p
lugin
for acce
s
sions, po
p
u
l
ations
.
.
.
commit
|
commitdiff
|
tree
2022-10-14
Lukas Mueller
delete
f
ile
.
commit
|
commitdiff
|
tree
2022-10-14
L
u
k
a
s Muel
l
er
M
erg
e
branch
'
mas
t
e
r
' in
t
o
topic/fix_pedigree_
u
p
l
oad_
f
or_v
e
ct
o
rs
commit
|
commitdiff
|
tree
2022-10-14
Luk
a
s
Mueller
add a
n
e
w
plugin th
a
t te
s
ts for matc
h
es t
o
accessions
.
.
.
commit
|
commitdiff
|
tree
2022-10-13
Luka
s
M
u
eller
te
m
porari
l
y
s
et forbid_c
a
che to 1,
adjus
t
retrieve_genotyp
e
s
.
.
.
commit
|
commitdiff
|
tree
2022-10-13
Lukas Mueller
also output the file to $file,
i
n
a
d
diti
o
n of returning
.
.
.
commit
|
commitdiff
|
tree
2022-10-13
Lu
k
as Muel
l
er
transpose the do
s
age matrix
;
remove label column
.
commit
|
commitdiff
|
tree
2022-10-12
Lukas Mueller
support
d
osag
e
genotype format in addition
to vcf
.
commit
|
commitdiff
|
tree
2022-09-30
Lukas Mu
e
ller
Merge pull
re
q
uest
#
4
234 from
solgeno
m
i
c
s/topic/pr
o
gram
_
ed
i
t
.
.
.
commit
|
commitdiff
|
tree
2022-09-29
Lukas Muell
e
r
M
erge
p
ul
l
re
q
u
est #4238 from solgenomic
s
/t
o
pic/unique_seedl
.
.
.
commit
|
commitdiff
|
tree
2022-09-28
Lu
k
as Muelle
r
f
a
ctor out a downloa
d
_genoty
p
e_vcf f
u
nction, needed
.
.
.
commit
|
commitdiff
|
tree
2022-09-23
Lukas Muell
e
r
Merg
e
pull request
#
4
233 from solgenomics/topic/ona_
t
est_form
commit
|
commitdiff
|
tree
2022-09-22
Lukas Mueller
Merge pull
r
e
quest #4221 from solgenomics/t
o
pic/solgs
.
.
.
commit
|
commitdiff
|
tree
2022-09-22
Luka
s
Mue
l
ler
Merge pull request #4227 from solg
e
no
m
ics/
t
opi
c
/
get_downl
o
ad
.
.
.
commit
|
commitdiff
|
tree
2022-09-10
Lukas Muell
e
r
m
ov
e
R-i
f
icat
i
o
n
code to mixed model objec
t
.
commit
|
commitdiff
|
tree
2022-09-01
Luka
s
Mue
l
l
er
Merge pull reques
t
#421
2
from
s
olgenomics/topic/s
o
lgs
.
.
.
commit
|
commitdiff
|
tree
2022-08-30
Lukas
M
u
e
ller
Merg
e
pull request #4211 from
s
olgeno
m
ics/top
i
c/wishlist_dir
commit
|
commitdiff
|
tree
2022-08-25
Luka
s
Mue
l
ler
Merge pull request
#
4205 fr
o
m
s
o
lgenomics/topic
/
solg
s
.
.
.
commit
|
commitdiff
|
tree
2022-08-18
L
u
kas Muelle
r
Merge pull request #41
9
7 from solgenomics/topic/termination_
.
.
.
commit
|
commitdiff
|
tree
2022-07-28
Lukas
M
ue
l
le
r
Merg
e
pull r
e
qu
e
st #4185 fr
o
m solgen
o
mics/
t
opic/
g
i
t
ac
t
i
o
n
_se
.
.
.
commit
|
commitdiff
|
tree
2022-07-28
L
u
kas Mueller
M
erge pull reque
s
t #
4
186 from
s
olgenomics/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2022-07-28
L
uka
s
Mueller
Merge pull
r
equest #4187
fro
m
solgenomics/topic/to
m
del
d
b_jbrowse
commit
|
commitdiff
|
tree
2022-07-28
Lukas Mueller
Merge p
u
ll
request #4188 from s
o
lgenomics/topic/multiple_pro
.
.
.
commit
|
commitdiff
|
tree
2022-07-25
Lukas Muel
l
er
Mer
g
e p
u
l
l
r
eq
u
est #4182 from
s
olgenomics/topic/custom_plot_name
commit
|
commitdiff
|
tree
2022-07-25
Lukas Mueller
Merge p
u
ll request #4183
from solgeno
m
ics/t
o
pic/faci
l
it
y
_
i
de
.
.
.
commit
|
commitdiff
|
tree
2022-07-21
Lukas
M
ueller
M
e
rge pull r
e
quest
#
4
1
7
2 from solgenomics
/
topic/
n
ew_tiss
u
e
s
_
.
.
.
commit
|
commitdiff
|
tree
2022-07-21
Luk
a
s Mueller
Merge pull reques
t
#4181 from so
l
genomics/top
i
c/
s
e
lenium_ful
.
.
.
commit
|
commitdiff
|
tree
2022-07-18
Luka
s
Muelle
r
M
e
rge pu
l
l
r
eques
t
#4174 fro
m
s
o
l
gen
o
mics/
t
opic
/
solgs
.
.
.
commit
|
commitdiff
|
tree
2022-07-14
Lukas
M
u
eller
Mer
g
e pull request #4158 from solgenomics/t
o
pic/se
n
soryTrialT
y
pe
commit
|
commitdiff
|
tree
2022-07-14
Lukas Muel
l
er
Merge pull reques
t
#4
1
67 from
s
olgenomics/topic/migrate_Barc
.
.
.
commit
|
commitdiff
|
tree
2022-07-14
Lukas Mueller
Mer
g
e pull re
q
uest #4
1
68 fro
m
solgenom
i
c
s/topic/proj
e
ct_owner
commit
|
commitdiff
|
tree
2022-07-14
Lukas Mueller
M
e
rge pull request #4169 fr
o
m solgenomics/topi
c
/add_mor
e
_tis
.
.
.
commit
|
commitdiff
|
tree
2022-07-14
Luk
a
s Muell
e
r
Merge pul
l
reques
t
#4171 fr
o
m solgenomics/
t
op
i
c/cross_download
commit
|
commitdiff
|
tree
2022-07-11
Lukas M
u
eller
M
erge pull request #4154 fro
m
solgenomics/t
o
pi
c
/
s
o
lgs
.
.
.
commit
|
commitdiff
|
tree
2022-07-11
Luka
s
Mue
l
ler
Merge pu
l
l request #4161 from solgenomics/
t
op
i
c
/T
o
mDelDb
commit
|
commitdiff
|
tree
2022-07-11
Lukas Mu
e
ller
Merge
p
ull request #41
6
2
from s
o
lgenomics/topic/solgs
.
.
.
commit
|
commitdiff
|
tree
2022-07-11
Lukas
M
u
e
ll
e
r
Merge pull request
#4163 from so
l
gen
o
mi
c
s/t
o
pic/soil
_
data
commit
|
commitdiff
|
tree
2022-07-11
Lukas Mue
l
ler
M
erge pull
request #
4
16
4
from
s
olgenomics/topic/test_Val
i
dat
.
.
.
commit
|
commitdiff
|
tree
2022-06-27
Lukas
Mu
e
ller
Merge pull request #
4
1
4
7 from
sol
g
enomi
c
s/t
o
pic
/
selenium_b
r
e
.
.
.
commit
|
commitdiff
|
tree
2022-06-27
Lu
k
as Mueller
Merge pull reque
s
t
#
41
4
9 from solgenomics/topic/fix_p
r
ep_des
.
.
.
commit
|
commitdiff
|
tree
2022-06-16
Luk
a
s Mu
e
lle
r
Mer
g
e pull re
q
uest #4127
from solgenomics/topic
/
Add_timestam
.
.
.
commit
|
commitdiff
|
tree
2022-06-10
Lukas Mueller
tweak mixed mod
e
l
test
.
.
.
not yet passing
.
commit
|
commitdiff
|
tree
2022-06-09
Lukas Muel
l
er
change temp dir name to mixed_models
commit
|
commitdiff
|
tree
2022-06-07
Lukas Mueller
fi
x
a
n
issue w
i
th organism
i
n C
X
GN::
S
toc
k
and modify
.
.
.
commit
|
commitdiff
|
tree
2022-06-07
Lukas Mueller
Merge branch
'
m
aster' in
t
o top
i
c/gpcp_tool
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
fix parsing of models for sommer and reconstruct correctly
.
.
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
Merge pull req
u
es
t
#4
0
91 f
r
om solgenomics/topi
c
/
f
ix_vcf_uplo
.
.
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
Merge pull request #4095 from solge
n
omics/top
i
c/wizard_sele
c
.
.
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
Merge pull req
u
est #4097
from solgenomics/top
i
c/fix_selenium
.
.
.
commit
|
commitdiff
|
tree
2022-05-19
L
u
kas Mueller
Merge
p
ull reques
t
#
4099
from solgenomics/topic/parental_u
s
a
g
e
commit
|
commitdiff
|
tree
2022-05-19
Lukas
M
ueller
wai
t
a
bit before testi
n
g prese
n
ce of
files
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
remove
L
Fs when reading files
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Muell
e
r
Mer
g
e pull request
#4084 from solgenomics
/
t
o
pic/
r
e
name_scrip
.
.
.
commit
|
commitdiff
|
tree
2022-05-19
Lukas Mueller
sommer model now
d
isp
l
ay
i
ng correctly on tool; not
.
.
.
commit
|
commitdiff
|
tree
2022-05-18
Lukas Mueller
Merg
e
pull
r
equest
#
4096
f
rom
s
olgenomics/l
u
kasmueller
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas Mu
e
ller
The shm
_
s
ize op
t
ion
is not supported on githu
b
se
r
v
i
c
e
commit
|
commitdiff
|
tree
2022-05-16
Lukas Mueller
M
e
rg
e
pull reques
t
#4094 from solge
n
omics/luka
s
muelle
r
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Luka
s
Mueller
change g to gb
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas Mueller
repl
a
ce tab with space :-(
commit
|
commitdiff
|
tree
2022-05-16
Lu
k
as Mueller
Merge pull r
e
quest #4093 from solgenomi
c
s/to
p
ic/fix_gi
t
hub
_
t
e
sts
commit
|
commitdiff
|
tree
2022-05-16
Lukas
M
ueller
add
s
hm_siz
e
:
2
g option to
breedbase_
d
b containe
r
,
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas M
u
eller
Merge
p
ull request #409
0
f
r
om solgenomics/
t
opi
c
/fi
x
_acce
s
sio
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas Muelle
r
M
erge pull request #4
0
92 from solgen
o
mics/topic/refactoring_
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas Mueller
remove LFs from
l
i
n
es rea
d
from file for
c
ompati
b
ility
.
.
.
commit
|
commitdiff
|
tree
2022-05-16
L
u
kas Mueller
remove d
e
bu
g
gin
g
inf
o
.
commit
|
commitdiff
|
tree
2022-05-16
Lukas Mueller
report
o
nly distinct values fo
r
the string
a
ggre
g
atio
n
.
.
.
commit
|
commitdiff
|
tree
2022-05-12
production
u
s
er
run
t
he correct R script for lme4 or for sommer
commit
|
commitdiff
|
tree
2022-05-12
p
r
o
d
u
c
t
i
on user
implment
a s
t
e
p
t
owards genera
t
ing sommer mo
d
e
l
s
.
commit
|
commitdiff
|
tree
2022-05-12
L
ukas Mueller
fix query for
s
toc
k
_synonym cvterm
_
id
.
commit
|
commitdiff
|
tree
2022-05-12
L
u
kas Mueller
Me
r
ge branch 'm
a
ster' into topic/r
e
name_script_changes
commit
|
commitdiff
|
tree
2022-05-12
Lukas
Mueller
M
erge pull
r
equest #4081 from solgeno
m
ics/topi
c
/fi
x
_selenium
.
.
.
commit
|
commitdiff
|
tree
2022-05-12
Lukas
M
ueller
Me
r
ge pull re
q
u
est #
4
0
8
5 from solgenomics/topic/fixing_tests
commit
|
commitdiff
|
tree
2022-05-11
Lu
k
as Muel
l
er
fix ty
p
o
.
commit
|
commitdiff
|
tree
2022-05-11
Lukas Mueller
tweak po
d
.
commit
|
commitdiff
|
tree
2022-05-11
Lukas Mueller
get
the s
y
nony
m
c
vterm id
.
commit
|
commitdiff
|
tree
2022-05-11
Lukas
Mueller
a
dd old name as synonym
b
y
de
f
ault o
r
u
s
e option
n
.
.
.
commit
|
commitdiff
|
tree
2022-05-09
Lu
k
as Muelle
r
M
erge pu
l
l request #4067
fr
o
m solge
n
o
m
i
cs/topic/fi
x
_biologic
.
.
.
commit
|
commitdiff
|
tree
2022-05-09
Lukas Mueller
Merge
pul
l
request #4075 from solgenomics/t
o
pic/solg
s
.
.
.
commit
|
commitdiff
|
tree
2022-05-09
Lukas Mueller
Merg
e
pull request #4076 from
s
olgenomic
s
/
topic/nirs_brapi_setu
p
commit
|
commitdiff
|
tree
next