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2019-07-29	Lukas Mueller	Merge pull request #2547 from solgenomics/topic/modern_mixed...	commit \| commitdiff \| tree
2019-07-29	Lukas Mueller	Merge pull request #2552 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-07-22	Lukas Mueller	Merge pull request #2545 from solgenomics/topic/modify_cross...	commit \| commitdiff \| tree
2019-07-18	Lukas Mueller	tweak trial designs that still crash.	commit \| commitdiff \| tree
2019-07-16	Lukas Mueller	start interfacing the mixed model tools with the analysis...	commit \| commitdiff \| tree
2019-07-15	Lukas Mueller	Merge pull request #2518 from solgenomics/topic/documentatio...	commit \| commitdiff \| tree
2019-07-15	Lukas Mueller	Merge pull request #2530 from solgenomics/topic/fix_bug	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	change the name of the new location so that the old...	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	make swap_sample_wells.pl compile.	commit \| commitdiff \| tree
2019-07-09	Lukas Mueller	add a script to swap sample wells in genotyping plates.	commit \| commitdiff \| tree
2019-07-08	Lukas Mueller	Merge pull request #2524 from solgenomics/topic/parallax_scr...	commit \| commitdiff \| tree
2019-07-05	Lukas Mueller	tweak plugins so that they (mostly) work.	commit \| commitdiff \| tree
2019-07-05	Lukas Mueller	always use standard object notation when calling functions...	commit \| commitdiff \| tree
2019-07-04	Lukas Mueller	make all tests pass in CXGN/Trial.t.	commit \| commitdiff \| tree
2019-07-03	Lukas Mueller	Merge pull request #2522 from solgenomics/topic/new_sgn_homepage	commit \| commitdiff \| tree
2019-07-01	Lukas Mueller	make trial accessor accept different flavors of Trial...	commit \| commitdiff \| tree
2019-06-28	Lukas Mueller	Merge pull request #2520 from solgenomics/topic/parallax_scr...	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	make test work, partially complete.	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	move class functions from Project.pm class back to...	commit \| commitdiff \| tree
2019-06-27	Lukas Mueller	add owner as a projectprop.	commit \| commitdiff \| tree
2019-06-13	Lukas Mueller	Merge pull request #2510 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-06-11	Lukas Mueller	add start of Analysis framework.	commit \| commitdiff \| tree
2019-06-05	Lukas Mueller	Merge pull request #2498 from solgenomics/topic/fix_stock_ad...	commit \| commitdiff \| tree
2019-05-25	Lukas Mueller	add a function that retrieves all trail metadata (file...	commit \| commitdiff \| tree
2019-05-25	Lukas Mueller	fix conflict in CXGN::Trial.	commit \| commitdiff \| tree
2019-05-22	Lukas Mueller	tweak analysis and mixed model objects.	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	add POD and fix bug that caused synonyms to be loaded...	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	Merge pull request #2483 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	Merge pull request #2479 from solgenomics/topic/fix_blast_js...	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	fix issue with blast	commit \| commitdiff \| tree
2019-05-17	Lukas Mueller	working on storing analyses, work in progress.	commit \| commitdiff \| tree
2019-05-15	Lukas Mueller	Merge pull request #2472 from solgenomics/topic/varitome_car...	commit \| commitdiff \| tree
2019-05-13	Lukas Mueller	Merge pull request #2460 from solgenomics/topic/varitome_pag...	commit \| commitdiff \| tree
2019-05-10	Lukas Mueller	add missing CXGN::Phenotype::File class.	commit \| commitdiff \| tree
2019-05-10	Lukas Mueller	Merge pull request #2459 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-05-07	Lukas Mueller	Merge pull request #2448 from TriticeaeToolbox/topic...	commit \| commitdiff \| tree
2019-05-06	Lukas Mueller	Merge pull request #2441 from TriticeaeToolbox/topic...	commit \| commitdiff \| tree
2019-05-02	Lukas Mueller	Merge pull request #2436 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-05-01	Lukas Mueller	tweaks.	commit \| commitdiff \| tree
2019-04-25	Lukas Mueller	Merge pull request #2422 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-04-22	Lukas Mueller	Merge pull request #2407 from solgenomics/topic/improve_tran...	commit \| commitdiff \| tree
2019-04-22	Lukas Mueller	Merge pull request #2423 from solgenomics/topic/fixing_cross...	commit \| commitdiff \| tree
2019-04-20	Lukas Mueller	more objects for mixed models.	commit \| commitdiff \| tree
2019-04-18	Lukas Mueller	add mixed model tools to new branch (excessive conflicts...	commit \| commitdiff \| tree
2019-04-18	Lukas Mueller	Merge pull request #2418 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-04-11	Lukas Mueller	Merge pull request #2414 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-04-11	Lukas Mueller	Merge pull request #2412 from solgenomics/topic/genotypeprop...	commit \| commitdiff \| tree
2019-04-04	Lukas Mueller	Merge pull request #2410 from solgenomics/topic/protocol_sea...	commit \| commitdiff \| tree
2019-04-01	Lukas Mueller	Merge pull request #2364 from solgenomics/topic/add_new_obse...	commit \| commitdiff \| tree
2019-04-01	Lukas Mueller	Merge pull request #2392 from solgenomics/topic/fix_genotypeprop	commit \| commitdiff \| tree
2019-03-26	Lukas Mueller	Update README.md	commit \| commitdiff \| tree
2019-03-26	Lukas Mueller	Update README.md	commit \| commitdiff \| tree
2019-03-20	Lukas Mueller	Merge pull request #2385 from solgenomics/topic/genotypeprop_fix	commit \| commitdiff \| tree
2019-03-19	Lukas Mueller	Merge pull request #2384 from solgenomics/topic/fix_fetch_creds	commit \| commitdiff \| tree
2019-03-14	Lukas Mueller	Merge pull request #2378 from solgenomics/topic/fix_westcott	commit \| commitdiff \| tree
2019-03-14	Lukas Mueller	Merge pull request #2380 from solgenomics/topic/site_dir	commit \| commitdiff \| tree
2019-03-11	Lukas Mueller	Merge pull request #2371 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-03-11	Lukas Mueller	Merge pull request #2350 from solgenomics/topic/modern_javas...	commit \| commitdiff \| tree
2019-03-04	Lukas Mueller	Merge pull request #2365 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-02-25	Lukas Mueller	Merge pull request #2347 from solgenomics/topic/genotype_qc	commit \| commitdiff \| tree
2019-02-14	Lukas Mueller	Merge pull request #2348 from solgenomics/topic/solgwas_speedup	commit \| commitdiff \| tree
2019-02-13	Lukas Mueller	Merge pull request #2345 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-02-13	Lukas Mueller	Merge pull request #2344 from solgenomics/topic/sol2019	commit \| commitdiff \| tree
2019-02-11	Lukas Mueller	Merge pull request #2342 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-02-07	Lukas Mueller	Merge pull request #2336 from solgenomics/topic/solgs...	commit \| commitdiff \| tree
2019-02-01	Lukas Mueller	add POD to CXGN::Genotype.	commit \| commitdiff \| tree
2019-02-01	Lukas Mueller	adding a function for checking the concordance of parental...	commit \| commitdiff \| tree
2019-01-30	Lukas Mueller	Merge pull request #2330 from solgenomics/topic/sp_ontology_...	commit \| commitdiff \| tree
2019-01-30	Lukas Mueller	Merge pull request #2335 from solgenomics/topic/update_merge...	commit \| commitdiff \| tree
2019-01-27	Lukas Mueller	add to do in Stock.pm	commit \| commitdiff \| tree
2018-12-20	Lukas Mueller	fix issue with new location geojson format and metadata.	commit \| commitdiff \| tree
2018-12-11	Lukas Mueller	fix show and download links for matched BLAST sequence.	commit \| commitdiff \| tree
2018-11-29	Lukas Mueller	Merge pull request #2274 from solgenomics/topic/search_stock...	commit \| commitdiff \| tree
2018-11-20	Lukas Mueller	Merge pull request #2267 from solgenomics/topic/boxplotter	commit \| commitdiff \| tree
2018-11-03	Lukas Mueller	fix conflict	commit \| commitdiff \| tree
2018-11-03	Lukas Mueller	blast test database reindexing.	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	use CXGN::Blast object instead of outdated CXGN::BlastDb...	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	read jbrowse_src from db	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	add jbrowse_src column to Blast object.	commit \| commitdiff \| tree
2018-11-02	Lukas Mueller	Merge pull request #2251 from solgenomics/topic/UpdateMusaStock	commit \| commitdiff \| tree
2018-11-01	Lukas Mueller	rename_stocks.pl operations should be done on uniquename...	commit \| commitdiff \| tree
2018-11-01	Lukas Mueller	continue if a stock is not found.	commit \| commitdiff \| tree
2018-11-01	Lukas Mueller	remove unneeded option -c	commit \| commitdiff \| tree
2018-11-01	Lukas Mueller	report if a stock is not found.	commit \| commitdiff \| tree
2018-11-01	Lukas Mueller	modify rename_stocks.pl to rename stock uniquenames...	commit \| commitdiff \| tree
2018-10-20	Lukas Mueller	Merge pull request #2234 from solgenomics/topic/gwas_web	commit \| commitdiff \| tree
2018-10-12	Lukas Mueller	fix undefined value warnings in File.pm	commit \| commitdiff \| tree
2018-10-04	Lukas Mueller	remove stderr messages.	commit \| commitdiff \| tree
2018-10-04	Lukas Mueller	fix automatic password field data entry by clicking...	commit \| commitdiff \| tree
2018-09-12	Lukas Mueller	ignore emacs backup files also in db/run_all_patches.pl	commit \| commitdiff \| tree
2018-09-12	Lukas Mueller	ignore dbpatches that are emacs backup files.	commit \| commitdiff \| tree
2018-09-12	Lukas Mueller	use postgres password from config file for running...	commit \| commitdiff \| tree
2018-08-08	Lukas Mueller	db patch for image display order.	commit \| commitdiff \| tree
2018-08-08	Lukas Mueller	make the order of images editable on detail pages.	commit \| commitdiff \| tree
2018-07-22	Lukas Mueller	fix URL form quick_create_user.	commit \| commitdiff \| tree
2018-07-22	Lukas Mueller	move the quick create user function from cgi to MVC.	commit \| commitdiff \| tree
2018-07-02	Lukas Mueller	report count of deleted images.	commit \| commitdiff \| tree
2018-07-02	Lukas Mueller	a script to delete images.	commit \| commitdiff \| tree
2018-06-26	Lukas Mueller	fix typo in location upload form description.	commit \| commitdiff \| tree
2018-06-06	Lukas Mueller	Merge pull request #1928 from solgenomics/topic/phenotype_ta...	commit \| commitdiff \| tree
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