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Modernize CannedForms and don't use GlobalContext in our new controller
2011-06-01
Jonath
a
n
"
Du
k
e"
.
.
.
Mo
d
er
n
ize CannedForms
a
n
d don't use GlobalConte
x
t
in
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
J
on
a
than "
D
uke
"
.
.
.
follow
r
buel
s
+
+ advice
and do a 301 redi
r
ect at the
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Ad
d
the le
g
ac
y
path
o
f dire
c
t_se
a
rch to the
n
ew
co
n
troller
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
h
a
n
"
Duke"
.
.
.
Merge rem
o
t
e-tracking br
a
nch 'origin/to
p
i
c
/
org
a
nism_sear
c
h
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
ha
n
"Duk
e
"
.
.
.
Add a
s
keleton dire
c
t s
e
arch
ca
t
alyst controller
commit
|
commitdiff
|
tree
2011-05-25
Jonathan "Duke"
.
.
.
M
erge br
a
nch
'
topic/secretom'
commit
|
commitdiff
|
tree
2011-05-25
Jonathan "Duke"
.
.
.
Merge bran
c
h
'
mas
t
e
r
' into topic/secretom
commit
|
commitdiff
|
tree
2011-05-11
Jona
t
han "Duke"
.
.
.
Convert ajax organism controller in
t
egration tests
.
.
.
commit
|
commitdiff
|
tree
2011-05-11
Jonat
h
a
n "Duke"
.
.
.
Mo
v
e an example seleniu
m
test to the proper h
o
me
commit
|
commitdiff
|
tree
2011-05-06
Jon
a
than "Duke"
.
.
.
Make more
cvterm
ajax
i
ntegr
a
tion tests fail m
o
re
gr
a
cefully
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jona
t
han "Duke"
.
.
.
Make
cvt
e
rm
aj
a
x i
n
tegr
a
tion tests f
a
il more gracefully
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke"
.
.
.
Revert "fix
t
est_
a
l
l
.
pl hanging if server fails to
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke"
.
.
.
Revert "clean up server p
r
ocess if
it
dies
"
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "D
u
ke"
.
.
.
perlti
d
y biosour
c
e validation tests
commit
|
commitdiff
|
tree
2011-05-06
J
o
nathan "Duk
e
"
.
.
.
Don't
u
se SG
N
_T
E
S
T
_S
E
RVER in the biosour
c
e validat
i
on
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jona
t
h
a
n
"Duke"
.
.
.
Moder
n
ize the bl
a
st index
.
pl
commit
|
commitdiff
|
tree
2011-05-05
Jonat
h
an "
D
u
k
e"
.
.
.
Add some useful warn
i
n
g
s t
o
t/
t
est_
a
ll
.
pl to debug
.
.
.
commit
|
commitdiff
|
tree
2011-05-05
J
o
nathan "Duke"
.
.
.
Sq
u
ash
a
w
a
rn
i
ng in the Cview
contro
l
l
er
commit
|
commitdiff
|
tree
2011-05-05
Jonat
h
an "Duke
"
.
.
.
Squash a
w
a
rning
commit
|
commitdiff
|
tree
2011-05-04
Jo
n
athan "Duke"
.
.
.
Crush s
o
me war
n
ings
commit
|
commitdiff
|
tree
2011-05-04
J
o
nathan "Duke"
.
.
.
Squash w
a
rnings
commit
|
commitdiff
|
tree
2011-05-04
Jo
n
athan "Du
k
e"
.
.
.
Make align_viewer
.
t tests
u
s
e S
G
N::Test::
W
WW::Mechanize
commit
|
commitdiff
|
tree
2011-05-04
Jonathan "Duke"
.
.
.
Mak
e
SGN
:
:Test::Da
t
a qui
e
te
r
by default
commit
|
commitdiff
|
tree
2011-05-03
Jon
a
than "
D
uke"
.
.
.
F
i
x
C
ontent-disposition
t
e
s
t for SGN::Controller::Down
l
oad
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "Du
k
e"
.
.
.
fix typo i
n
sgn
.
co
n
f
commit
|
commitdiff
|
tree
2011-05-03
Jon
a
than "Duke
"
.
.
.
Groom forma
t
tinghe
l
p
ers
.
t a bi
t
commit
|
commitdiff
|
tree
2011-05-03
Jona
t
h
a
n "Duke"
.
.
.
Prevent some uninitialized
v
a
lu
e
warnings
commit
|
commitdiff
|
tree
2011-04-26
Jonat
h
a
n
"Duke"
.
.
.
Ma
k
e t
/
01
a
pp
.
t use
T
est:
:
Most (trigger
j
itterbu
g
)
commit
|
commitdiff
|
tree
2011-04-26
Jonath
a
n "Duke"
.
.
.
T
i
dy up a
scri
p
t to
t
e
m
pt the Jitter
b
ug
g
o
d
s
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Du
k
e"
.
.
.
Yet another trivial
ch
a
n
g
e to trigger Ji
t
t
e
rbug
commit
|
commitdiff
|
tree
2011-04-26
J
o
nathan "D
u
ke"
.
.
.
Ignore a file which is gene
r
ated b
y
newer Mod
u
le
:
:Build's
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duk
e
"
.
.
.
Trivial
cha
n
ge t
o
Build
.
PL to tr
i
gge
r
jitt
e
rbug
commit
|
commitdiff
|
tree
2011-04-26
J
onathan "Duke"
.
.
.
M
e
rge br
a
nch 'maste
r
' into
topic/s
e
c
r
eto
m
commit
|
commitdiff
|
tree
2011-04-22
Jonat
h
an "Duke"
.
.
.
R
e
mov
e
th
e
m
i
nified c
o
lorbox
a
nd reset colorbox
.
js
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Jona
t
han "Duke"
.
.
.
P
r
operly s
q
uash
r
edefinition warnings
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "
D
uke"
.
.
.
Warning squash in
info_sect
i
on
.
mas
commit
|
commitdiff
|
tree
2011-04-15
Jonathan "Duk
e
"
.
.
.
Mer
g
e branch '
t
opic/
t
mpredp
l
'
commit
|
commitdiff
|
tree
2011-03-24
J
on
a
than "Duke"
.
.
.
M
erg
e
remote-tracking branch 'origi
n
/topic/stock_sear
c
h'
commit
|
commitdiff
|
tree
2011-03-24
Jona
t
h
an "Du
k
e
"
.
.
.
Merge remote-tr
a
cking branch 'or
i
gin/topic/stock_
s
ea
r
ch
.
.
.
commit
|
commitdiff
|
tree
2011-03-24
J
o
nathan "Du
k
e"
.
.
.
Use unminified the jquery, because
it
w
ill be minified
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
Remove a useless use of catf
i
le, r
b
uels++
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
M
a
ke stock search w
o
rk properly
f
r
om
d
ir
e
c
t_search
.
p
l
commit
|
commitdiff
|
tree
2011-03-23
Jon
a
than
"
Duke"
.
.
.
Merge remo
t
e-tra
c
king branc
h
'orig
i
n
/
topic/stock_search
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jona
t
ha
n
"D
u
ke"
.
.
.
Store the sto
c
k
s
earc
h
form in an externa
l
YAML file
commit
|
commitdiff
|
tree
2011-03-23
Jonath
a
n
"Du
k
e"
.
.
.
c
ont
a
iner_attributes is
n
ot a valid Form
F
u attribute
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan
"
Duke
"
.
.
.
Merge remote-tracking bran
c
h '
o
rig
i
n/t
o
pic/stoc
k
_sea
r
ch
.
.
.
commit
|
commitdiff
|
tree
2011-03-22
Jonathan "D
u
ke"
.
.
.
wip
commit
|
commitdiff
|
tree
2011-03-17
Jo
n
a
t
han "Duk
e
"
.
.
.
Add a stub for up
d
ati
n
g
the trait ra
n
ge w
h
en the trait
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
Jonathan "D
u
ke"
.
.
.
Add a div th
a
t
c
an be po
p
ulated
w
i
t
h the
v
al
i
d trait
.
.
.
commit
|
commitdiff
|
tree
2011-03-16
Jonath
a
n "Duke"
.
.
.
Fix
s
tock
search paginat
i
on links
and refa
c
to
r
c
o
ntroller
commit
|
commitdiff
|
tree
2011-03-16
Jo
n
athan "Duke"
.
.
.
Refactor stock co
n
troll
e
r
.
No functional
c
ha
n
ges
commit
|
commitdiff
|
tree
2011-03-15
Jon
a
t
h
an "Duke"
.
.
.
S
h
ow the advanced options in stoc
k
s
earch re
s
ult
s
if
.
.
.
commit
|
commitdiff
|
tree
2011-03-14
Jonathan
"
Duke"
.
.
.
Update the 'A
b
ou
t
SGN' blu
r
b to be more inclusive to
.
.
.
commit
|
commitdiff
|
tree
2011-03-15
J
onathan "Duke"
.
.
.
F
i
x
s
y
n
tax
e
rror in organi
s
m
c
on
t
r
oller test
commit
|
commitdiff
|
tree
2011-03-11
Jon
a
than "Duke"
.
.
.
Make the advanced c
h
eckbox on stock search finally
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
J
o
nathan "Duke"
.
.
.
Use the ba
r
ely-documented cont
a
iner_attributes in FormFu
commit
|
commitdiff
|
tree
2011-03-10
Jonath
a
n
"
Duke"
.
.
.
Tell FormF
u
to add CSS c
l
a
s
ses to c
e
rtain a
d
v
anced
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Jo
n
at
h
an
"
D
u
ke"
.
.
.
perlt
i
d
y
on assing_owner
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Jonath
a
n "Duk
e
"
.
.
.
C
lean up cruft i
n
assign_
o
w
n
e
r
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
M
ode
r
niz
e
and u
n
cruftify
the cview index
.
mas a b
i
t
commit
|
commitdiff
|
tree
2011-02-04
Jo
n
at
h
an "Duke"
.
.
.
Add some kling
o
n s
e
nsib
i
lity
t
o
S
ecretom code and clean
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Rem
o
ve cruft
from cvie
w
index
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"Duke"
.
.
.
Ref
a
ctor
Organ
i
sm
controller
t
ests a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke
"
.
.
.
P
rope
r
ly
s
kip ITAG release tests
whe
n
req
u
ired data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jo
n
athan
"Duke"
.
.
.
Add t/
d
ata to
.
gitignore
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Properly
w
arn the exit cod
e
if something
f
a
i
ls
in SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jonat
h
an "Duk
e
"
.
.
.
Perlti
d
y
on t/phen
o
m
e/qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "
D
u
k
e
"
.
.
.
Conver
t
bulk test
s
t
o
use SGN:
:
Te
s
t::WW
W
::
M
echa
n
ize
commit
|
commitdiff
|
tree
2011-02-01
J
onathan "Duke"
.
.
.
Make SGN::Build report
better erro
r
s when checking
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonath
a
n "Duke"
.
.
.
Mo
v
e SGN::View::Ema
i
l:
:
E
r
rorEmail tests
t
o a nicer
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jo
n
athan "Duke"
.
.
.
Sk
i
p some
QTL tests if the heatm
a
p
i
s not pres
e
nt,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Du
k
e"
.
.
.
M
ake SGN::V
i
ew::Sto
c
k generate
cvterm lin
k
s f
r
om cvterm
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
onathan "Duk
e
"
.
.
.
Skip some tests if mem
b
er_s
e
arch_form is no
t
a
vailable
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Add
s
ome dia
g
no
s
itcs and a
tes
t
for SGN::
C
o
n
t
r
oller
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan
"
Duke"
.
.
.
Skip s
o
me
g
enomic clo
n
e tests if the releva
n
t form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jon
a
than "Duke"
.
.
.
Give Bio::
S
ecre
T
ary:
:
TMpred mode
r
n klingon-like powers
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Perlt
i
dy on Bio::SecreT
a
ry::TMpre
d
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Du
k
e"
.
.
.
Cache the db wh
e
n loo
k
i
n
g up fea
t
ur
e
_cvterms a
n
d pre
v
ent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Du
k
e
"
.
.
.
update
.
giti
g
nore
commit
|
commitdiff
|
tree
2011-01-28
Jon
a
t
h
an "Duke"
.
.
.
Move
S
GN::View::Email te
s
t
s
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Prettify SGN
:
:Controller::S
t
ock
commit
|
commitdiff
|
tree
2011-01-28
Jo
n
athan "Duke"
.
.
.
Make
some
tr
i
vial changes
t
o tri
g
ger jitt
e
rbug
commit
|
commitdiff
|
tree
2011-01-26
Jonatha
n
"D
u
ke"
.
.
.
Me
r
ge
b
ranch 't
o
pic/contact'
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duk
e
"
.
.
.
Get user email c
o
r
r
ectly
commit
|
commitdiff
|
tree
2011-01-26
Jonathan
"
Duke"
.
.
.
Modernize the
C
ontact Contr
o
ller
commit
|
commitdiff
|
tree
2011-01-26
J
o
n
at
h
a
n
"
Duke"
.
.
.
P
erltidy
on locus_display
.
pl
commit
|
commitdiff
|
tree
2011-01-26
Jo
n
athan "Duke"
.
.
.
R
ef
a
c
t
or some SGN::Authe
n
ticatio
n
::* code
commit
|
commitdiff
|
tree
2011-01-24
Jon
a
than "Duke"
.
.
.
Us
e
SGN::View::Email instead of the deprecated CXG
N
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jona
t
han "Duke"
.
.
.
Remove /too
l
s/contact
.
p
l
and
a
l
l refe
r
e
nces to it,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonat
h
an "Duke"
.
.
.
M
o
dernize cosii_su
b
mission
commit
|
commitdiff
|
tree
2011-01-22
Jonath
a
n
"
D
uke"
.
.
.
perlt
i
dy on
t
/integr
a
tion/contact
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jonat
h
an "Duke"
.
.
.
Perltidy t/cview/map
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jona
t
han "D
u
ke"
.
.
.
Fi
x
SGN::Build::Ch
a
ngelog
t
e
s
ts
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "Duke"
.
.
.
Fix sequ
e
nc
e
API tests
commit
|
commitdiff
|
tree
2011-01-13
Jonathan "Duke"
.
.
.
Fix
erro
r
count and
remove some
c
ommented-ou
t
code
commit
|
commitdiff
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2010-12-09
Jonathan "D
u
ke"
.
.
.
Ignore some temp data
f
iles
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2010-12-07
J
o
n
athan "Duke"
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Add a
t
rait_list
.
pl val
i
d
a
tion test
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2010-12-07
J
onathan "Duke"
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.
.
A
dd
s
o
me more QTL
s
earch validation tests
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2010-12-07
Jon
a
than "Duke"
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.
.
Create a n
e
w test file for search validation tests
.
.
.
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2010-12-01
J
o
n
a
than "Duke"
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.
.
Add
basic test for /tools/wait
.
p
l
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