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perltidy on assing_owner.pl
2011-02-28
J
o
nat
h
an "Duk
e
"
.
.
.
perltidy o
n
a
ssing_owne
r
.
pl
commit
|
commitdiff
|
tree
2011-02-28
J
o
n
a
than "Duke"
.
.
.
Cle
a
n up cruf
t
i
n
assig
n
_owner
.
p
l
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama M
e
nd
a
fixed
s
earch by edito
r
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
Revert
"
a
dde
d
undef
optio
n
to allele
mode o
f
i
nheri
t
ance"
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Menda
no need for perso
n
object in the l
o
c
u
s
ajax test,
s
in
c
e
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama M
e
nda
testi
n
g if
the allele secti
o
n is printed corr
e
ctly
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
test
f
or stock aj
a
x associa
t
e_locus func
t
ion
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
inv
a
l
id stock or al
l
ele id err
o
r is no
w
s
en
t
for the
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
test
for peopl
e
a
j
ax
c
ontrol
l
e
r
commit
|
commitdiff
|
tree
2011-02-28
N
aa
m
a Men
d
a
test for l
o
c
u
s ajax control
l
e
r
commit
|
commitdiff
|
tree
2011-02-28
Rob
e
rt Buels
a
d
d
a
f
o
rm-
s
ubmitte
d
var to baby WW
W
::Mechanize t
e
s
t
s
commit
|
commitdiff
|
tree
2011-02-28
Rob
e
rt Bue
l
s
re
m
ove
tab chars fr
o
m stock search
.
mas
commit
|
commitdiff
|
tree
2011-02-28
N
a
a
ma Menda
tr
y
ing
to get teh stock_sea
r
ch_form t
o
s
ubmit
i
n t
h
e
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama
Menda
trying
to fi
x
the stock search test
commit
|
commitdiff
|
tree
2011-02-28
Naama
Menda
t
esting sea
r
ch sto
c
k by edit
o
r
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Me
n
da
added someth
i
ng to
s
tockpr
o
p_G
E
T
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
ad
d
ed check if user is logged
i
n with
the co
r
rect privile
g
es
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
type_i
d
was ambiguo
u
s
.
exists
in s
t
ock and stockprop
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
m
a Menda
ad
d
ed sea
r
ch stock by editor
+
a
u
toc
o
mpletion
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a
Me
n
da
w
r
ote form
.
mas pa
r
amet
e
rs more
readabl
e
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
enda
fixed link for s
u
bmitting
ne
w
s
tock,
and added option
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
fixed
l
i
n
k to stock page
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
M
e
nda
ad
d
ed search stock
by editor name
,
stock obje
c
t an
d
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a
M
enda
do not print allel
e
table he
a
der
s
if n
o
allel
e
s are
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Na
a
ma M
e
nda
f
i
x
ed stock link to curre
n
t url
commit
|
commitdiff
|
tree
2011-02-28
Na
a
m
a Menda
added an AJA
X
REST contr
o
ller f
o
r s
g
n pe
o
ple
.
Current
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
aama Menda
moved allele sec
t
ion to a java
s
c
ri
p
t d
i
v
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
checking user privile
g
es before creating new
stockprop
commit
|
commitdiff
|
tree
2011-02-28
Naama
M
enda
fixing the
a
ssociate locus fun
c
tionality on
t
h
e
s
tock
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
documentation f
o
r javascript form obj
e
ct
commit
|
commitdiff
|
tree
2011-02-28
Naama Me
n
da
loading sc
r
i
p
t for
sol
c
ap snp g
e
notypes
commit
|
commitdiff
|
tree
2011-02-28
Naama Mend
a
added link
to stock
owners
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
a
d
ded f
u
nction
f
or associa
t
ing l
o
ci
commit
|
commitdiff
|
tree
2011-02-28
Naama
Menda
added
f
orm for browsing loci to
be
a
ssociated with
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
removed some perl
c
ode f
r
om allele component
commit
|
commitdiff
|
tree
2011-02-28
Naam
a
Menda
ad
d
_publication works
n
o
w for stocks
commit
|
commitdiff
|
tree
2011-02-28
N
a
ama Mend
a
db pat
c
h for moving the stock publications to the
r
ight
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
N
a
a
m
a Mend
a
added a lin
k
ed loci sec
t
ion
.
Nee
d
to a
d
d
t
h
e js
f
orm
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naa
m
a Menda
printing some
stock p
r
operties
commit
|
commitdiff
|
tree
2011-02-28
Naama Menda
a
dded
more i
n
fo + synonym li
s
t to t
h
e
stock page
.
commit
|
commitdiff
|
tree
2011-02-28
N
a
a
ma Menda
mov
e
d the phenotype search tab
t
o
point
t
o
new s
t
ock
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Naama
Menda
m
o
ved the stock search form to a
mason component
commit
|
commitdiff
|
tree
2011-02-04
Jona
t
han "
D
uk
e
"
.
.
.
Modernize and uncruftify the cview
i
ndex
.
m
a
s
a
bit
commit
|
commitdiff
|
tree
2011-02-04
Jona
t
han "Duk
e
"
.
.
.
Add some kl
i
ngon sen
s
ibi
l
i
t
y
t
o
Secretom
code
and c
l
ea
n
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Remov
e
cruft from
cview
i
ndex
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jon
a
tha
n
"Duke"
.
.
.
Refactor Organism cont
r
oller tests a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Prop
e
rly skip ITAG release tes
t
s when required data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Add t/data to
.
gitignore
commit
|
commitdiff
|
tree
2011-02-04
Jon
a
t
h
a
n "Duk
e
"
.
.
.
Properly warn
t
he e
x
i
t
code if something f
a
ils
in SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jonathan "Duke
"
.
.
.
Perl
t
id
y
on t/pheno
m
e/qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jon
a
t
ha
n
"Duke"
.
.
.
Convert b
u
lk t
e
sts
t
o
use SGN::Te
s
t::WWW::Mec
h
anize
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke
"
.
.
.
Make S
G
N::Build re
p
ort better
er
r
ors when checking
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jo
n
athan
"D
u
ke"
.
.
.
Move SGN
:
:
V
i
ew
:
:Email
:
:
E
rr
o
rEmail t
e
sts to a nicer
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
J
onathan "D
u
ke"
.
.
.
S
k
i
p some QTL
tests
if the heatmap is
n
ot pr
e
sent,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan
"Duke"
.
.
.
Make SGN::View::Stock
g
e
nerate
cvte
r
m links from
c
v
term
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
o
n
a
than
"
D
uke"
.
.
.
S
k
ip some tes
t
s if
m
emb
e
r
_
search_form i
s
n
ot available
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Add s
o
m
e diagno
s
itcs an
d
a t
e
st for SGN::Controlle
r
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke"
.
.
.
Skip
some genomic clone
t
ests if the releva
n
t form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
o
nat
h
a
n "Duke"
.
.
.
Gi
v
e Bio::SecreTary::TMpred mod
e
rn klingon-l
i
ke powers
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Du
k
e
"
.
.
.
P
erltidy
o
n Bio::SecreT
a
ry::TMpred
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duk
e
"
.
.
.
Ca
c
he the db when looking
up fe
a
ture
_
cv
t
erms and
pr
e
v
ent
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
J
o
n
a
than "Duke"
.
.
.
update
.
gitignore
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Mo
v
e
S
GN::View::Email t
e
sts
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duk
e
"
.
.
.
Prettify SGN::Controller::Stock
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Duke"
.
.
.
Make so
m
e t
r
ivi
a
l chang
e
s to trigger j
i
tterb
u
g
commit
|
commitdiff
|
tree
2011-01-26
Jonat
h
an "Duke"
.
.
.
Merg
e
bran
c
h
'topic/co
n
tact'
commit
|
commitdiff
|
tree
2011-01-26
Jonatha
n
"Duke
"
.
.
.
G
e
t us
e
r e
m
a
il co
r
re
c
tly
commit
|
commitdiff
|
tree
2011-01-26
Jonathan
"
Duke"
.
.
.
Moder
n
ize the
Conta
c
t Control
l
er
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duke"
.
.
.
Perltidy
on
l
ocus_display
.
pl
commit
|
commitdiff
|
tree
2011-01-26
Jonat
h
an "Duke"
.
.
.
R
e
fa
c
tor some SGN::Authen
t
ication::* code
commit
|
commitdiff
|
tree
2011-01-24
Jonathan "Duke"
.
.
.
U
s
e
S
G
N
::Vi
e
w::Email instead of
the depr
e
c
a
ted CXGN
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonathan
"
Duke"
.
.
.
Remove /tools
/
conta
c
t
.
pl
a
nd all references to
i
t,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
Moder
n
i
z
e c
o
sii_s
u
bm
i
ssion
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
perltidy
on t/int
e
gration/contact
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jo
n
athan
"
D
uke"
.
.
.
Perltidy t/c
v
ie
w
/map
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jo
n
athan
"Duke"
.
.
.
Fix
SGN::Build::Cha
n
ge
l
og
tests
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "D
u
ke"
.
.
.
F
i
x
s
e
q
uence API
tests
commit
|
commitdiff
|
tree
2011-01-13
Jonathan "D
u
ke"
.
.
.
Fix error count and remove some commented
-
ou
t
code
commit
|
commitdiff
|
tree
2011-01-13
r
a
y
Req
u
irements f
i
xed
commit
|
commitdiff
|
tree
2011-01-13
ray
Updates to Cont
a
c
t p
a
ge
.
commit
|
commitdiff
|
tree
2011-01-13
ray
Upd
a
tes to Contact page
.
commit
|
commitdiff
|
tree
2011-01-13
rayleigh
Contact page
.
commit
|
commitdiff
|
tree
2011-01-13
ray
Forgot to add a mas
o
n c
o
mpon
e
n
t
needed
.
commit
|
commitdiff
|
tree
2011-01-13
r
ay
Another update of te
s
t
commit
|
commitdiff
|
tree
2011-01-13
ray
Anoth
e
r up
d
a
te o
f
t
e
st
commit
|
commitdiff
|
tree
2011-01-13
ra
y
New C
o
nt
a
ct
Page-Updated test ag
a
in
commit
|
commitdiff
|
tree
2011-01-13
ra
y
N
e
w Contact
Page-U
p
d
ated
t
est again
commit
|
commitdiff
|
tree
2011-01-13
ray
New
C
onta
c
t
Page-Updated test again
commit
|
commitdiff
|
tree
2011-01-13
ray
New Contact Page
-
Updated te
s
t again
commit
|
commitdiff
|
tree
2011-01-13
ray
New
C
ontact Pa
g
e
-
Update
d
test a
g
ain
commit
|
commitdiff
|
tree
2011-01-13
r
ay
New Con
t
act Page-Update
d
test again
commit
|
commitdiff
|
tree
2011-01-13
ra
y
New
C
ontact Page-U
p
dated test again
commit
|
commitdiff
|
tree
2011-01-13
ray
New Conta
c
t Page-Upda
t
ed tes
t
commit
|
commitdiff
|
tree
2011-01-13
ray
Ne
w
C
o
n
t
act Pag
e
commit
|
commitdiff
|
tree
2010-12-09
Jo
n
a
than
"
D
u
k
e"
.
.
.
Ignore some
temp
da
t
a
f
i
l
es
commit
|
commitdiff
|
tree
2010-12-07
J
o
n
athan "Duke"
.
.
.
A
d
d a trai
t
_li
s
t
.
pl va
l
idatio
n
t
e
s
t
commit
|
commitdiff
|
tree
2010-12-07
Jonatha
n
"Duke"
.
.
.
Add some
mo
r
e Q
T
L
s
earch
v
ali
d
a
ti
o
n
tes
t
s
commit
|
commitdiff
|
tree
2010-12-07
Jonat
h
a
n "
D
uke
"
.
.
.
Create a ne
w
test f
i
le for search validation tests
.
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
cvterms_search
.
pl i
s
renam
e
d qtl_search
.
pl
.
.
commit
|
commitdiff
|
tree
2010-12-07
isaak
renamed
c
v
terms_search
.
pl to
q
tl_search
.
pl
.
.
commit
|
commitdiff
|
tree
next